Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS00580

Experiment: adipate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS00575 and ABZR87_RS00580 are separated by 28 nucleotidesABZR87_RS00580 and ABZR87_RS00585 are separated by 233 nucleotides ABZR87_RS00575: ABZR87_RS00575 - HipA N-terminal domain-containing protein, at 118,449 to 119,759 _RS00575 ABZR87_RS00580: ABZR87_RS00580 - hypothetical protein, at 119,788 to 120,063 _RS00580 ABZR87_RS00585: ABZR87_RS00585 - M20 family metallopeptidase, at 120,297 to 121,709 _RS00585 Position (kb) 119 120 121Strain fitness (log2 ratio) -2 -1 0 1 2at 118.915 kb on + strand, within ABZR87_RS00575at 118.916 kb on - strand, within ABZR87_RS00575at 118.945 kb on + strand, within ABZR87_RS00575at 118.946 kb on - strand, within ABZR87_RS00575at 118.946 kb on - strand, within ABZR87_RS00575at 119.040 kb on + strand, within ABZR87_RS00575at 119.040 kb on + strand, within ABZR87_RS00575at 119.040 kb on + strand, within ABZR87_RS00575at 119.041 kb on - strand, within ABZR87_RS00575at 119.140 kb on + strand, within ABZR87_RS00575at 119.141 kb on - strand, within ABZR87_RS00575at 119.205 kb on + strand, within ABZR87_RS00575at 119.205 kb on + strand, within ABZR87_RS00575at 119.205 kb on + strand, within ABZR87_RS00575at 119.205 kb on + strand, within ABZR87_RS00575at 119.205 kb on + strand, within ABZR87_RS00575at 119.206 kb on - strand, within ABZR87_RS00575at 119.206 kb on - strand, within ABZR87_RS00575at 119.206 kb on - strand, within ABZR87_RS00575at 119.206 kb on - strand, within ABZR87_RS00575at 119.457 kb on + strand, within ABZR87_RS00575at 119.508 kb on + strand, within ABZR87_RS00575at 119.508 kb on + strand, within ABZR87_RS00575at 119.509 kb on - strand, within ABZR87_RS00575at 119.509 kb on - strand, within ABZR87_RS00575at 119.559 kb on + strand, within ABZR87_RS00575at 119.560 kb on - strand, within ABZR87_RS00575at 119.699 kb on + strandat 119.700 kb on - strandat 119.789 kb on + strandat 119.789 kb on + strandat 119.789 kb on + strandat 119.789 kb on + strandat 119.789 kb on + strandat 119.790 kb on - strandat 119.790 kb on - strandat 119.790 kb on - strandat 119.826 kb on - strand, within ABZR87_RS00580at 119.826 kb on - strand, within ABZR87_RS00580at 119.925 kb on - strand, within ABZR87_RS00580at 119.925 kb on - strand, within ABZR87_RS00580at 119.925 kb on - strand, within ABZR87_RS00580at 120.034 kb on + strand, within ABZR87_RS00580at 120.040 kb on + strandat 120.040 kb on + strandat 120.040 kb on + strandat 120.041 kb on - strandat 120.041 kb on - strandat 120.041 kb on - strandat 120.041 kb on - strandat 120.112 kb on - strandat 120.112 kb on - strandat 120.112 kb on - strandat 120.112 kb on - strandat 120.123 kb on + strandat 120.326 kb on + strandat 120.326 kb on + strandat 120.326 kb on + strandat 120.326 kb on + strandat 120.327 kb on - strandat 120.327 kb on - strandat 120.327 kb on - strandat 120.492 kb on + strand, within ABZR87_RS00585at 120.492 kb on + strand, within ABZR87_RS00585at 120.492 kb on + strand, within ABZR87_RS00585at 120.493 kb on - strand, within ABZR87_RS00585at 120.493 kb on - strand, within ABZR87_RS00585at 120.493 kb on - strand, within ABZR87_RS00585at 120.493 kb on - strand, within ABZR87_RS00585at 120.493 kb on - strand, within ABZR87_RS00585at 120.513 kb on + strand, within ABZR87_RS00585at 120.513 kb on + strand, within ABZR87_RS00585at 120.513 kb on + strand, within ABZR87_RS00585at 120.513 kb on + strand, within ABZR87_RS00585at 120.514 kb on - strand, within ABZR87_RS00585at 120.514 kb on - strand, within ABZR87_RS00585at 120.645 kb on + strand, within ABZR87_RS00585at 120.646 kb on - strand, within ABZR87_RS00585at 120.726 kb on + strand, within ABZR87_RS00585at 120.779 kb on + strand, within ABZR87_RS00585at 120.779 kb on + strand, within ABZR87_RS00585at 120.779 kb on + strand, within ABZR87_RS00585at 120.780 kb on - strand, within ABZR87_RS00585at 120.780 kb on - strand, within ABZR87_RS00585at 120.780 kb on - strand, within ABZR87_RS00585at 120.780 kb on - strand, within ABZR87_RS00585at 120.957 kb on + strand, within ABZR87_RS00585at 120.957 kb on + strand, within ABZR87_RS00585at 120.958 kb on - strand, within ABZR87_RS00585at 120.958 kb on - strand, within ABZR87_RS00585at 120.958 kb on - strand, within ABZR87_RS00585at 120.990 kb on + strand, within ABZR87_RS00585at 120.991 kb on - strand, within ABZR87_RS00585at 121.050 kb on - strand, within ABZR87_RS00585at 121.050 kb on - strand, within ABZR87_RS00585

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Per-strain Table

Position Strand Gene LocusTag Fraction adipate (C)
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118,915 + ABZR87_RS00575 0.36 +1.8
118,916 - ABZR87_RS00575 0.36 +1.1
118,945 + ABZR87_RS00575 0.38 +1.2
118,946 - ABZR87_RS00575 0.38 +1.0
118,946 - ABZR87_RS00575 0.38 +0.4
119,040 + ABZR87_RS00575 0.45 +1.7
119,040 + ABZR87_RS00575 0.45 +1.6
119,040 + ABZR87_RS00575 0.45 +0.6
119,041 - ABZR87_RS00575 0.45 +0.7
119,140 + ABZR87_RS00575 0.53 +1.4
119,141 - ABZR87_RS00575 0.53 +1.1
119,205 + ABZR87_RS00575 0.58 +1.7
119,205 + ABZR87_RS00575 0.58 +1.2
119,205 + ABZR87_RS00575 0.58 +0.7
119,205 + ABZR87_RS00575 0.58 +0.9
119,205 + ABZR87_RS00575 0.58 +1.4
119,206 - ABZR87_RS00575 0.58 +1.2
119,206 - ABZR87_RS00575 0.58 +1.6
119,206 - ABZR87_RS00575 0.58 +1.9
119,206 - ABZR87_RS00575 0.58 +1.0
119,457 + ABZR87_RS00575 0.77 +1.7
119,508 + ABZR87_RS00575 0.81 +0.5
119,508 + ABZR87_RS00575 0.81 +1.1
119,509 - ABZR87_RS00575 0.81 +2.6
119,509 - ABZR87_RS00575 0.81 +1.7
119,559 + ABZR87_RS00575 0.85 +1.6
119,560 - ABZR87_RS00575 0.85 +1.4
119,699 + +1.8
119,700 - +1.7
119,789 + +0.4
119,789 + +0.7
119,789 + -1.6
119,789 + -0.6
119,789 + +0.6
119,790 - +0.6
119,790 - +0.4
119,790 - -0.5
119,826 - ABZR87_RS00580 0.14 -1.0
119,826 - ABZR87_RS00580 0.14 -1.3
119,925 - ABZR87_RS00580 0.50 -0.4
119,925 - ABZR87_RS00580 0.50 +0.3
119,925 - ABZR87_RS00580 0.50 -0.2
120,034 + ABZR87_RS00580 0.89 -1.6
120,040 + -2.7
120,040 + -0.7
120,040 + -1.3
120,041 - -0.5
120,041 - +0.4
120,041 - -0.6
120,041 - -2.1
120,112 - +0.8
120,112 - +0.3
120,112 - +0.2
120,112 - +0.6
120,123 + -1.7
120,326 + +0.7
120,326 + +0.5
120,326 + +0.5
120,326 + -0.2
120,327 - +0.3
120,327 - +0.4
120,327 - +1.1
120,492 + ABZR87_RS00585 0.14 +0.7
120,492 + ABZR87_RS00585 0.14 +0.7
120,492 + ABZR87_RS00585 0.14 +1.4
120,493 - ABZR87_RS00585 0.14 +0.1
120,493 - ABZR87_RS00585 0.14 +0.2
120,493 - ABZR87_RS00585 0.14 -0.1
120,493 - ABZR87_RS00585 0.14 -1.8
120,493 - ABZR87_RS00585 0.14 +0.6
120,513 + ABZR87_RS00585 0.15 +0.4
120,513 + ABZR87_RS00585 0.15 +1.9
120,513 + ABZR87_RS00585 0.15 -0.4
120,513 + ABZR87_RS00585 0.15 +0.3
120,514 - ABZR87_RS00585 0.15 -0.9
120,514 - ABZR87_RS00585 0.15 +0.0
120,645 + ABZR87_RS00585 0.25 -0.2
120,646 - ABZR87_RS00585 0.25 -0.4
120,726 + ABZR87_RS00585 0.30 -0.3
120,779 + ABZR87_RS00585 0.34 +0.5
120,779 + ABZR87_RS00585 0.34 -0.6
120,779 + ABZR87_RS00585 0.34 -0.3
120,780 - ABZR87_RS00585 0.34 +0.4
120,780 - ABZR87_RS00585 0.34 +0.5
120,780 - ABZR87_RS00585 0.34 -0.1
120,780 - ABZR87_RS00585 0.34 -0.2
120,957 + ABZR87_RS00585 0.47 +0.2
120,957 + ABZR87_RS00585 0.47 +0.9
120,958 - ABZR87_RS00585 0.47 +1.7
120,958 - ABZR87_RS00585 0.47 -0.3
120,958 - ABZR87_RS00585 0.47 +0.7
120,990 + ABZR87_RS00585 0.49 +1.8
120,991 - ABZR87_RS00585 0.49 -1.7
121,050 - ABZR87_RS00585 0.53 +0.0
121,050 - ABZR87_RS00585 0.53 +0.0

Or see this region's nucleotide sequence