Experiment: BHIS with Dimethyl Sulfoxide 0.2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT3907 and BT3908 are separated by 18 nucleotides BT3908 and BT3909 are separated by 14 nucleotides
BT3907: BT3907 - conserved hypothetical protein (NCBI ptt file), at 5,079,538 to 5,081,013
BT3907
BT3908: BT3908 - conserved hypothetical protein (NCBI ptt file), at 5,081,032 to 5,082,111
BT3908
BT3909: BT3909 - conserved hypothetical protein (NCBI ptt file), at 5,082,126 to 5,084,354
BT3909
Position (kb) 5081
5082
5083 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5080.261 kb on - strand, within BT3907 at 5080.286 kb on + strand, within BT3907 at 5080.334 kb on + strand, within BT3907 at 5080.335 kb on - strand, within BT3907 at 5080.349 kb on + strand, within BT3907 at 5080.378 kb on + strand, within BT3907 at 5080.628 kb on - strand, within BT3907 at 5080.628 kb on - strand, within BT3907 at 5080.826 kb on - strand, within BT3907 at 5080.826 kb on - strand, within BT3907 at 5080.864 kb on + strand, within BT3907 at 5080.865 kb on - strand, within BT3907 at 5080.865 kb on - strand, within BT3907 at 5080.927 kb on - strand at 5080.929 kb on + strand at 5080.929 kb on + strand at 5080.932 kb on + strand at 5080.988 kb on + strand at 5081.151 kb on + strand, within BT3908 at 5081.200 kb on - strand, within BT3908 at 5081.203 kb on + strand, within BT3908 at 5081.204 kb on - strand, within BT3908 at 5081.212 kb on - strand, within BT3908 at 5081.265 kb on - strand, within BT3908 at 5081.267 kb on + strand, within BT3908 at 5081.314 kb on - strand at 5081.401 kb on + strand, within BT3908 at 5081.478 kb on + strand, within BT3908 at 5081.479 kb on - strand, within BT3908 at 5081.484 kb on - strand, within BT3908 at 5081.484 kb on - strand, within BT3908 at 5081.530 kb on - strand, within BT3908 at 5081.626 kb on - strand, within BT3908 at 5081.626 kb on - strand, within BT3908 at 5081.723 kb on + strand, within BT3908 at 5081.890 kb on - strand, within BT3908 at 5082.021 kb on + strand at 5082.140 kb on - strand at 5082.142 kb on + strand at 5082.189 kb on + strand at 5082.190 kb on - strand at 5082.379 kb on - strand, within BT3909 at 5082.429 kb on + strand, within BT3909 at 5082.566 kb on + strand, within BT3909 at 5082.567 kb on - strand, within BT3909 at 5082.673 kb on + strand, within BT3909 at 5082.674 kb on - strand, within BT3909 at 5082.693 kb on - strand, within BT3909 at 5082.700 kb on + strand, within BT3909 at 5082.777 kb on - strand, within BT3909 at 5082.832 kb on + strand, within BT3909 at 5082.839 kb on + strand, within BT3909 at 5082.858 kb on + strand, within BT3909 at 5082.915 kb on + strand, within BT3909 at 5082.922 kb on - strand, within BT3909 at 5082.922 kb on - strand, within BT3909 at 5082.995 kb on + strand, within BT3909 at 5083.091 kb on + strand, within BT3909
Per-strain Table
Position Strand Gene LocusTag Fraction BHIS with Dimethyl Sulfoxide 0.2 vol% remove 5,080,261 - BT3907 0.49 -0.9 5,080,286 + BT3907 0.51 -1.5 5,080,334 + BT3907 0.54 -1.9 5,080,335 - BT3907 0.54 -3.3 5,080,349 + BT3907 0.55 -1.9 5,080,378 + BT3907 0.57 -0.9 5,080,628 - BT3907 0.74 -0.7 5,080,628 - BT3907 0.74 -0.9 5,080,826 - BT3907 0.87 +0.1 5,080,826 - BT3907 0.87 +0.1 5,080,864 + BT3907 0.90 -1.4 5,080,865 - BT3907 0.90 -1.9 5,080,865 - BT3907 0.90 -0.5 5,080,927 - +0.1 5,080,929 + +0.1 5,080,929 + -1.9 5,080,932 + -0.5 5,080,988 + -1.4 5,081,151 + BT3908 0.11 -2.3 5,081,200 - BT3908 0.16 -1.5 5,081,203 + BT3908 0.16 -1.3 5,081,204 - BT3908 0.16 -1.9 5,081,212 - BT3908 0.17 -0.9 5,081,265 - BT3908 0.22 -0.5 5,081,267 + BT3908 0.22 -1.2 5,081,314 - -0.9 5,081,401 + BT3908 0.34 -0.9 5,081,478 + BT3908 0.41 -2.0 5,081,479 - BT3908 0.41 -1.7 5,081,484 - BT3908 0.42 -1.5 5,081,484 - BT3908 0.42 -0.9 5,081,530 - BT3908 0.46 -3.6 5,081,626 - BT3908 0.55 +0.1 5,081,626 - BT3908 0.55 -1.9 5,081,723 + BT3908 0.64 -1.6 5,081,890 - BT3908 0.79 -1.1 5,082,021 + -0.7 5,082,140 - -3.3 5,082,142 + -0.6 5,082,189 + +0.1 5,082,190 - +1.6 5,082,379 - BT3909 0.11 +0.6 5,082,429 + BT3909 0.14 +1.1 5,082,566 + BT3909 0.20 +0.1 5,082,567 - BT3909 0.20 +0.1 5,082,673 + BT3909 0.25 -1.5 5,082,674 - BT3909 0.25 -2.3 5,082,693 - BT3909 0.25 +0.1 5,082,700 + BT3909 0.26 -1.5 5,082,777 - BT3909 0.29 -1.5 5,082,832 + BT3909 0.32 -1.5 5,082,839 + BT3909 0.32 +0.1 5,082,858 + BT3909 0.33 -0.3 5,082,915 + BT3909 0.35 -0.9 5,082,922 - BT3909 0.36 -1.4 5,082,922 - BT3909 0.36 -0.7 5,082,995 + BT3909 0.39 +0.1 5,083,091 + BT3909 0.43 -1.9
Or see this region's nucleotide sequence