Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS18890

Experiment: water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS18880 and RS_RS18885 overlap by 4 nucleotidesRS_RS18885 and RS_RS18890 overlap by 4 nucleotidesRS_RS18890 and RS_RS18895 overlap by 4 nucleotides RS_RS18880: RS_RS18880 - 3-oxoacyl-ACP reductase FabG, at 464,860 to 465,588 _RS18880 RS_RS18885: RS_RS18885 - beta-hydroxyacyl-ACP dehydratase, at 465,585 to 466,067 _RS18885 RS_RS18890: RS_RS18890 - beta-ketoacyl-[acyl-carrier-protein] synthase II, at 466,064 to 467,251 _RS18890 RS_RS18895: RS_RS18895 - membrane protein, at 467,248 to 469,665 _RS18895 Position (kb) 466 467 468Strain fitness (log2 ratio) -2 -1 0 1at 465.131 kb on + strand, within RS_RS18880at 465.132 kb on - strand, within RS_RS18880at 465.242 kb on + strand, within RS_RS18880at 465.243 kb on - strand, within RS_RS18880at 465.243 kb on - strand, within RS_RS18880at 465.243 kb on - strand, within RS_RS18880at 465.345 kb on - strand, within RS_RS18880at 465.458 kb on - strand, within RS_RS18880at 465.635 kb on - strand, within RS_RS18885at 465.692 kb on - strand, within RS_RS18885at 465.781 kb on + strand, within RS_RS18885at 465.801 kb on + strand, within RS_RS18885at 465.920 kb on - strand, within RS_RS18885at 466.128 kb on + strandat 466.129 kb on - strandat 466.154 kb on - strandat 466.288 kb on + strand, within RS_RS18890at 466.289 kb on - strand, within RS_RS18890at 466.495 kb on + strand, within RS_RS18890at 466.495 kb on + strand, within RS_RS18890at 466.496 kb on - strand, within RS_RS18890at 466.496 kb on - strand, within RS_RS18890at 466.496 kb on - strand, within RS_RS18890at 466.806 kb on - strand, within RS_RS18890at 466.806 kb on - strand, within RS_RS18890at 466.893 kb on + strand, within RS_RS18890at 466.893 kb on + strand, within RS_RS18890at 467.047 kb on - strand, within RS_RS18890at 467.226 kb on + strandat 467.227 kb on - strandat 467.227 kb on - strandat 467.474 kb on + strandat 467.474 kb on + strandat 467.474 kb on + strandat 467.475 kb on - strandat 467.549 kb on + strand, within RS_RS18895at 467.745 kb on + strand, within RS_RS18895at 467.745 kb on + strand, within RS_RS18895at 467.745 kb on + strand, within RS_RS18895at 467.746 kb on - strand, within RS_RS18895at 467.816 kb on + strand, within RS_RS18895at 467.816 kb on + strand, within RS_RS18895at 468.103 kb on + strand, within RS_RS18895at 468.103 kb on + strand, within RS_RS18895at 468.160 kb on + strand, within RS_RS18895at 468.161 kb on - strand, within RS_RS18895at 468.161 kb on - strand, within RS_RS18895at 468.161 kb on - strand, within RS_RS18895

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Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
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465,131 + RS_RS18880 0.37 -0.6
465,132 - RS_RS18880 0.37 -1.0
465,242 + RS_RS18880 0.52 -0.2
465,243 - RS_RS18880 0.53 -0.4
465,243 - RS_RS18880 0.53 +0.2
465,243 - RS_RS18880 0.53 -0.4
465,345 - RS_RS18880 0.67 +1.0
465,458 - RS_RS18880 0.82 +0.1
465,635 - RS_RS18885 0.10 +0.1
465,692 - RS_RS18885 0.22 -0.6
465,781 + RS_RS18885 0.41 -0.7
465,801 + RS_RS18885 0.45 -0.0
465,920 - RS_RS18885 0.69 +1.0
466,128 + -0.1
466,129 - +0.0
466,154 - +0.3
466,288 + RS_RS18890 0.19 -0.1
466,289 - RS_RS18890 0.19 -0.3
466,495 + RS_RS18890 0.36 +0.0
466,495 + RS_RS18890 0.36 +1.7
466,496 - RS_RS18890 0.36 -0.3
466,496 - RS_RS18890 0.36 -0.7
466,496 - RS_RS18890 0.36 -0.6
466,806 - RS_RS18890 0.62 -0.4
466,806 - RS_RS18890 0.62 -0.3
466,893 + RS_RS18890 0.70 +0.4
466,893 + RS_RS18890 0.70 +0.6
467,047 - RS_RS18890 0.83 +1.0
467,226 + -0.1
467,227 - -0.3
467,227 - -0.4
467,474 + +0.1
467,474 + -1.0
467,474 + +0.1
467,475 - +0.4
467,549 + RS_RS18895 0.12 +0.2
467,745 + RS_RS18895 0.21 +0.1
467,745 + RS_RS18895 0.21 +1.1
467,745 + RS_RS18895 0.21 +0.7
467,746 - RS_RS18895 0.21 -0.9
467,816 + RS_RS18895 0.23 -1.8
467,816 + RS_RS18895 0.23 +1.0
468,103 + RS_RS18895 0.35 -0.0
468,103 + RS_RS18895 0.35 -0.1
468,160 + RS_RS18895 0.38 +0.0
468,161 - RS_RS18895 0.38 -0.4
468,161 - RS_RS18895 0.38 -0.2
468,161 - RS_RS18895 0.38 -0.1

Or see this region's nucleotide sequence