Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS02210

Experiment: water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS02200 and RS_RS02205 are separated by 21 nucleotidesRS_RS02205 and RS_RS02210 are separated by 25 nucleotidesRS_RS02210 and RS_RS02215 are separated by 16 nucleotides RS_RS02200: RS_RS02200 - hypothetical protein, at 472,764 to 473,192 _RS02200 RS_RS02205: RS_RS02205 - peptidase C39, at 473,214 to 473,918 _RS02205 RS_RS02210: RS_RS02210 - hypothetical protein, at 473,944 to 474,507 _RS02210 RS_RS02215: RS_RS02215 - acetate kinase, at 474,524 to 475,864 _RS02215 Position (kb) 473 474 475Strain fitness (log2 ratio) -1 0 1at 472.998 kb on + strand, within RS_RS02200at 473.437 kb on - strand, within RS_RS02205at 473.484 kb on + strand, within RS_RS02205at 474.077 kb on + strand, within RS_RS02210at 474.077 kb on + strand, within RS_RS02210at 474.078 kb on - strand, within RS_RS02210at 474.078 kb on - strand, within RS_RS02210at 474.078 kb on - strand, within RS_RS02210at 474.187 kb on + strand, within RS_RS02210at 474.526 kb on - strandat 474.526 kb on - strandat 474.627 kb on + strandat 474.913 kb on - strand, within RS_RS02215at 475.077 kb on + strand, within RS_RS02215at 475.077 kb on + strand, within RS_RS02215at 475.078 kb on - strand, within RS_RS02215at 475.078 kb on - strand, within RS_RS02215at 475.078 kb on - strand, within RS_RS02215at 475.078 kb on - strand, within RS_RS02215at 475.221 kb on + strand, within RS_RS02215at 475.222 kb on - strand, within RS_RS02215at 475.228 kb on - strand, within RS_RS02215at 475.389 kb on + strand, within RS_RS02215

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Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
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472,998 + RS_RS02200 0.55 +0.1
473,437 - RS_RS02205 0.32 +0.1
473,484 + RS_RS02205 0.38 +0.5
474,077 + RS_RS02210 0.24 -0.0
474,077 + RS_RS02210 0.24 -0.6
474,078 - RS_RS02210 0.24 +0.1
474,078 - RS_RS02210 0.24 -0.4
474,078 - RS_RS02210 0.24 -0.2
474,187 + RS_RS02210 0.43 +0.1
474,526 - +0.5
474,526 - -0.7
474,627 + -1.1
474,913 - RS_RS02215 0.29 -0.2
475,077 + RS_RS02215 0.41 -0.5
475,077 + RS_RS02215 0.41 +0.4
475,078 - RS_RS02215 0.41 +0.1
475,078 - RS_RS02215 0.41 -0.6
475,078 - RS_RS02215 0.41 -0.3
475,078 - RS_RS02215 0.41 -0.5
475,221 + RS_RS02215 0.52 -0.2
475,222 - RS_RS02215 0.52 +0.2
475,228 - RS_RS02215 0.52 +0.1
475,389 + RS_RS02215 0.65 -0.0

Or see this region's nucleotide sequence