Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS02170

Experiment: water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS02160 and RS_RS02165 are separated by 232 nucleotidesRS_RS02165 and RS_RS02170 are separated by 1 nucleotidesRS_RS02170 and RS_RS02175 are separated by 205 nucleotides RS_RS02160: RS_RS02160 - glycosyltransferase family 2 protein, at 464,288 to 465,061 _RS02160 RS_RS02165: RS_RS02165 - membrane protein, at 465,294 to 465,707 _RS02165 RS_RS02170: RS_RS02170 - hypothetical protein, at 465,709 to 466,143 _RS02170 RS_RS02175: RS_RS02175 - alpha/beta hydrolase, at 466,349 to 467,302 _RS02175 Position (kb) 465 466 467Strain fitness (log2 ratio) -1 0 1at 464.780 kb on + strand, within RS_RS02160at 464.915 kb on + strand, within RS_RS02160at 464.954 kb on + strand, within RS_RS02160at 464.954 kb on + strand, within RS_RS02160at 465.846 kb on - strand, within RS_RS02170at 466.177 kb on - strandat 466.317 kb on + strandat 466.586 kb on + strand, within RS_RS02175at 466.587 kb on - strand, within RS_RS02175at 466.989 kb on - strand, within RS_RS02175at 467.039 kb on + strand, within RS_RS02175at 467.075 kb on + strand, within RS_RS02175at 467.075 kb on + strand, within RS_RS02175at 467.076 kb on - strand, within RS_RS02175at 467.076 kb on - strand, within RS_RS02175

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Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
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464,780 + RS_RS02160 0.64 +0.3
464,915 + RS_RS02160 0.81 -0.5
464,954 + RS_RS02160 0.86 +0.6
464,954 + RS_RS02160 0.86 +0.8
465,846 - RS_RS02170 0.31 -1.6
466,177 - -0.0
466,317 + +1.0
466,586 + RS_RS02175 0.25 -1.7
466,587 - RS_RS02175 0.25 +0.9
466,989 - RS_RS02175 0.67 +0.1
467,039 + RS_RS02175 0.72 -0.6
467,075 + RS_RS02175 0.76 -1.1
467,075 + RS_RS02175 0.76 -0.5
467,076 - RS_RS02175 0.76 +0.1
467,076 - RS_RS02175 0.76 -0.4

Or see this region's nucleotide sequence