Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS01150

Experiment: water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS01145 and RS_RS01150 are separated by 126 nucleotidesRS_RS01150 and RS_RS01155 are separated by 550 nucleotides RS_RS01145: RS_RS01145 - EamA/RhaT family transporter, at 255,323 to 256,303 _RS01145 RS_RS01150: RS_RS01150 - AraC family transcriptional regulator, at 256,430 to 257,176 _RS01150 RS_RS01155: RS_RS01155 - DUF427 domain-containing protein, at 257,727 to 258,083 _RS01155 Position (kb) 256 257 258Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 255.733 kb on - strand, within RS_RS01145at 255.733 kb on - strand, within RS_RS01145at 255.829 kb on - strand, within RS_RS01145at 255.829 kb on - strand, within RS_RS01145at 255.999 kb on + strand, within RS_RS01145at 256.000 kb on - strand, within RS_RS01145at 256.002 kb on + strand, within RS_RS01145at 256.002 kb on + strand, within RS_RS01145at 256.002 kb on + strand, within RS_RS01145at 256.003 kb on - strand, within RS_RS01145at 256.003 kb on - strand, within RS_RS01145at 256.116 kb on + strand, within RS_RS01145at 256.116 kb on + strand, within RS_RS01145at 256.116 kb on + strand, within RS_RS01145at 256.125 kb on + strand, within RS_RS01145at 256.125 kb on + strand, within RS_RS01145at 256.125 kb on + strand, within RS_RS01145at 256.507 kb on - strand, within RS_RS01150at 256.510 kb on - strand, within RS_RS01150at 256.510 kb on - strand, within RS_RS01150at 256.701 kb on + strand, within RS_RS01150at 256.701 kb on + strand, within RS_RS01150at 256.752 kb on - strand, within RS_RS01150at 256.752 kb on - strand, within RS_RS01150at 256.752 kb on - strand, within RS_RS01150at 257.158 kb on - strandat 257.189 kb on + strandat 257.189 kb on + strandat 257.189 kb on + strandat 257.190 kb on - strandat 257.190 kb on - strandat 257.190 kb on - strandat 257.190 kb on - strandat 257.263 kb on - strandat 257.687 kb on + strandat 257.687 kb on + strandat 257.687 kb on + strandat 257.687 kb on + strandat 257.688 kb on - strandat 257.738 kb on + strandat 257.739 kb on - strandat 257.778 kb on + strand, within RS_RS01155at 257.779 kb on - strand, within RS_RS01155at 257.779 kb on - strand, within RS_RS01155at 257.809 kb on + strand, within RS_RS01155at 257.810 kb on - strand, within RS_RS01155at 257.810 kb on - strand, within RS_RS01155at 257.810 kb on - strand, within RS_RS01155at 257.810 kb on - strand, within RS_RS01155at 257.857 kb on + strand, within RS_RS01155at 257.857 kb on + strand, within RS_RS01155at 257.857 kb on + strand, within RS_RS01155at 257.857 kb on + strand, within RS_RS01155at 257.858 kb on - strand, within RS_RS01155at 257.858 kb on - strand, within RS_RS01155at 257.858 kb on - strand, within RS_RS01155at 257.858 kb on - strand, within RS_RS01155at 257.860 kb on + strand, within RS_RS01155at 257.944 kb on + strand, within RS_RS01155at 257.944 kb on + strand, within RS_RS01155at 257.945 kb on - strand, within RS_RS01155at 257.945 kb on - strand, within RS_RS01155at 257.945 kb on - strand, within RS_RS01155at 257.945 kb on - strand, within RS_RS01155at 257.946 kb on - strand, within RS_RS01155at 258.007 kb on + strand, within RS_RS01155at 258.144 kb on + strandat 258.144 kb on + strandat 258.144 kb on + strandat 258.145 kb on - strandat 258.145 kb on - strandat 258.145 kb on - strandat 258.145 kb on - strandat 258.145 kb on - strandat 258.145 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
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255,733 - RS_RS01145 0.42 -0.2
255,733 - RS_RS01145 0.42 -0.3
255,829 - RS_RS01145 0.52 -0.4
255,829 - RS_RS01145 0.52 +1.1
255,999 + RS_RS01145 0.69 -0.0
256,000 - RS_RS01145 0.69 +0.5
256,002 + RS_RS01145 0.69 +1.1
256,002 + RS_RS01145 0.69 +0.2
256,002 + RS_RS01145 0.69 -0.1
256,003 - RS_RS01145 0.69 +0.6
256,003 - RS_RS01145 0.69 +0.8
256,116 + RS_RS01145 0.81 -0.2
256,116 + RS_RS01145 0.81 +0.5
256,116 + RS_RS01145 0.81 +0.9
256,125 + RS_RS01145 0.82 -0.5
256,125 + RS_RS01145 0.82 +0.4
256,125 + RS_RS01145 0.82 +0.2
256,507 - RS_RS01150 0.10 -0.8
256,510 - RS_RS01150 0.11 +0.0
256,510 - RS_RS01150 0.11 -0.3
256,701 + RS_RS01150 0.36 +0.8
256,701 + RS_RS01150 0.36 +0.4
256,752 - RS_RS01150 0.43 +0.0
256,752 - RS_RS01150 0.43 +0.6
256,752 - RS_RS01150 0.43 +0.8
257,158 - -0.0
257,189 + +0.6
257,189 + -0.0
257,189 + -1.2
257,190 - +0.2
257,190 - -0.1
257,190 - -2.1
257,190 - +0.8
257,263 - +0.6
257,687 + -0.1
257,687 + -0.2
257,687 + +2.4
257,687 + +2.8
257,688 - +1.2
257,738 + -0.9
257,739 - -2.9
257,778 + RS_RS01155 0.14 +0.1
257,779 - RS_RS01155 0.15 +1.0
257,779 - RS_RS01155 0.15 -0.1
257,809 + RS_RS01155 0.23 +0.4
257,810 - RS_RS01155 0.23 -0.2
257,810 - RS_RS01155 0.23 -0.7
257,810 - RS_RS01155 0.23 +0.4
257,810 - RS_RS01155 0.23 +0.4
257,857 + RS_RS01155 0.36 -0.2
257,857 + RS_RS01155 0.36 +0.0
257,857 + RS_RS01155 0.36 +0.1
257,857 + RS_RS01155 0.36 -0.1
257,858 - RS_RS01155 0.37 -0.2
257,858 - RS_RS01155 0.37 +0.6
257,858 - RS_RS01155 0.37 -0.3
257,858 - RS_RS01155 0.37 +0.1
257,860 + RS_RS01155 0.37 -0.5
257,944 + RS_RS01155 0.61 +0.8
257,944 + RS_RS01155 0.61 +0.0
257,945 - RS_RS01155 0.61 -0.4
257,945 - RS_RS01155 0.61 -0.6
257,945 - RS_RS01155 0.61 +0.5
257,945 - RS_RS01155 0.61 -0.2
257,946 - RS_RS01155 0.61 -0.4
258,007 + RS_RS01155 0.78 +0.0
258,144 + +0.1
258,144 + +0.1
258,144 + +0.1
258,145 - -0.2
258,145 - -0.0
258,145 - +0.6
258,145 - -0.6
258,145 - +0.8
258,145 - -0.0

Or see this region's nucleotide sequence