Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS00965

Experiment: water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS00960 and RS_RS00965 are separated by 45 nucleotidesRS_RS00965 and RS_RS00970 are separated by 325 nucleotides RS_RS00960: RS_RS00960 - alcohol dehydrogenase, at 215,117 to 216,154 _RS00960 RS_RS00965: RS_RS00965 - ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent, at 216,200 to 218,017 _RS00965 RS_RS00970: RS_RS00970 - hypothetical protein, at 218,343 to 219,683 _RS00970 Position (kb) 216 217 218 219Strain fitness (log2 ratio) -2 -1 0 1 2at 215.245 kb on + strand, within RS_RS00960at 215.245 kb on + strand, within RS_RS00960at 215.245 kb on + strand, within RS_RS00960at 215.246 kb on - strand, within RS_RS00960at 215.374 kb on + strand, within RS_RS00960at 215.375 kb on - strand, within RS_RS00960at 215.417 kb on + strand, within RS_RS00960at 215.417 kb on + strand, within RS_RS00960at 215.480 kb on + strand, within RS_RS00960at 215.481 kb on - strand, within RS_RS00960at 215.513 kb on + strand, within RS_RS00960at 215.520 kb on + strand, within RS_RS00960at 215.563 kb on + strand, within RS_RS00960at 215.564 kb on - strand, within RS_RS00960at 215.925 kb on + strand, within RS_RS00960at 216.153 kb on - strandat 216.153 kb on - strandat 216.157 kb on + strandat 216.269 kb on + strandat 216.270 kb on - strandat 216.377 kb on + strandat 216.378 kb on - strandat 216.730 kb on + strand, within RS_RS00965at 216.731 kb on - strand, within RS_RS00965at 216.731 kb on - strand, within RS_RS00965at 216.798 kb on + strand, within RS_RS00965at 216.877 kb on + strand, within RS_RS00965at 216.932 kb on + strand, within RS_RS00965at 216.933 kb on - strand, within RS_RS00965at 216.933 kb on - strand, within RS_RS00965at 217.353 kb on - strand, within RS_RS00965at 217.477 kb on + strand, within RS_RS00965at 217.509 kb on + strand, within RS_RS00965at 217.510 kb on - strand, within RS_RS00965at 217.649 kb on + strand, within RS_RS00965at 217.649 kb on + strand, within RS_RS00965at 217.650 kb on - strand, within RS_RS00965at 217.650 kb on - strand, within RS_RS00965at 217.691 kb on + strand, within RS_RS00965at 217.713 kb on - strand, within RS_RS00965at 217.756 kb on + strand, within RS_RS00965at 217.756 kb on + strand, within RS_RS00965at 217.757 kb on - strand, within RS_RS00965at 217.760 kb on + strand, within RS_RS00965at 217.761 kb on - strand, within RS_RS00965at 218.004 kb on + strandat 218.123 kb on - strandat 218.123 kb on - strandat 218.123 kb on - strandat 218.127 kb on - strandat 218.164 kb on + strandat 218.243 kb on + strandat 218.244 kb on - strandat 218.252 kb on - strandat 218.401 kb on + strandat 218.401 kb on + strandat 218.401 kb on + strandat 218.402 kb on - strandat 218.402 kb on - strandat 218.402 kb on - strandat 218.402 kb on - strandat 218.402 kb on - strandat 218.402 kb on - strandat 218.527 kb on - strand, within RS_RS00970at 218.527 kb on - strand, within RS_RS00970at 218.541 kb on + strand, within RS_RS00970at 218.542 kb on - strand, within RS_RS00970at 218.542 kb on - strand, within RS_RS00970at 218.712 kb on + strand, within RS_RS00970at 218.712 kb on + strand, within RS_RS00970at 218.712 kb on + strand, within RS_RS00970at 218.713 kb on - strand, within RS_RS00970at 218.713 kb on - strand, within RS_RS00970at 218.713 kb on - strand, within RS_RS00970at 218.799 kb on + strand, within RS_RS00970at 218.799 kb on + strand, within RS_RS00970at 218.799 kb on + strand, within RS_RS00970at 218.959 kb on - strand, within RS_RS00970at 218.982 kb on + strand, within RS_RS00970at 218.982 kb on + strand, within RS_RS00970at 218.983 kb on - strand, within RS_RS00970at 218.983 kb on - strand, within RS_RS00970

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Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
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215,245 + RS_RS00960 0.12 -0.5
215,245 + RS_RS00960 0.12 -1.3
215,245 + RS_RS00960 0.12 -0.6
215,246 - RS_RS00960 0.12 +0.8
215,374 + RS_RS00960 0.25 -0.6
215,375 - RS_RS00960 0.25 +0.4
215,417 + RS_RS00960 0.29 -0.6
215,417 + RS_RS00960 0.29 +0.2
215,480 + RS_RS00960 0.35 -1.2
215,481 - RS_RS00960 0.35 +0.4
215,513 + RS_RS00960 0.38 -0.3
215,520 + RS_RS00960 0.39 +0.3
215,563 + RS_RS00960 0.43 +0.4
215,564 - RS_RS00960 0.43 +1.8
215,925 + RS_RS00960 0.78 -0.1
216,153 - +1.2
216,153 - +0.4
216,157 + -0.8
216,269 + -0.6
216,270 - -0.1
216,377 + +0.1
216,378 - +0.2
216,730 + RS_RS00965 0.29 -0.0
216,731 - RS_RS00965 0.29 +1.4
216,731 - RS_RS00965 0.29 +1.8
216,798 + RS_RS00965 0.33 -0.8
216,877 + RS_RS00965 0.37 -0.1
216,932 + RS_RS00965 0.40 +0.3
216,933 - RS_RS00965 0.40 +0.3
216,933 - RS_RS00965 0.40 +0.6
217,353 - RS_RS00965 0.63 -0.8
217,477 + RS_RS00965 0.70 -0.3
217,509 + RS_RS00965 0.72 -0.5
217,510 - RS_RS00965 0.72 +1.0
217,649 + RS_RS00965 0.80 -0.2
217,649 + RS_RS00965 0.80 -0.8
217,650 - RS_RS00965 0.80 -0.3
217,650 - RS_RS00965 0.80 -1.8
217,691 + RS_RS00965 0.82 -0.2
217,713 - RS_RS00965 0.83 -0.3
217,756 + RS_RS00965 0.86 -0.8
217,756 + RS_RS00965 0.86 -0.5
217,757 - RS_RS00965 0.86 +0.8
217,760 + RS_RS00965 0.86 -0.5
217,761 - RS_RS00965 0.86 +0.1
218,004 + +0.2
218,123 - +0.8
218,123 - +1.2
218,123 - +0.4
218,127 - +0.7
218,164 + +0.2
218,243 + +0.1
218,244 - +0.4
218,252 - +0.0
218,401 + +0.8
218,401 + +1.6
218,401 + +1.3
218,402 - -0.7
218,402 - +0.5
218,402 - +0.1
218,402 - +0.2
218,402 - +0.1
218,402 - -0.2
218,527 - RS_RS00970 0.14 +0.2
218,527 - RS_RS00970 0.14 +0.6
218,541 + RS_RS00970 0.15 +0.1
218,542 - RS_RS00970 0.15 -0.5
218,542 - RS_RS00970 0.15 -0.2
218,712 + RS_RS00970 0.28 +0.1
218,712 + RS_RS00970 0.28 -0.2
218,712 + RS_RS00970 0.28 -0.4
218,713 - RS_RS00970 0.28 +1.0
218,713 - RS_RS00970 0.28 +0.5
218,713 - RS_RS00970 0.28 -0.1
218,799 + RS_RS00970 0.34 -0.1
218,799 + RS_RS00970 0.34 +0.2
218,799 + RS_RS00970 0.34 +0.3
218,959 - RS_RS00970 0.46 -0.1
218,982 + RS_RS00970 0.48 -0.1
218,982 + RS_RS00970 0.48 +0.8
218,983 - RS_RS00970 0.48 -2.0
218,983 - RS_RS00970 0.48 -0.2

Or see this region's nucleotide sequence