Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS17440

Experiment: Taped volatile agar plate with no fungus

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Taped volatile agar plate with no fungus
4,002,091	-		HSERO_RS17435	0.14	-0.2
4,002,091	-		HSERO_RS17435	0.14	+0.2
4,002,128	-		HSERO_RS17435	0.18	-0.7
4,002,181	+		HSERO_RS17435	0.24	-0.1
4,002,185	-		HSERO_RS17435	0.25	-0.6
4,002,283	+		HSERO_RS17435	0.35	+0.4
4,002,291	-		HSERO_RS17435	0.36	-0.1
4,002,308	+		HSERO_RS17435	0.38	-1.0
4,002,355	-		HSERO_RS17435	0.43	-0.1
4,002,379	+		HSERO_RS17435	0.45	-3.1
4,002,397	-		HSERO_RS17435	0.47	-0.4
4,002,421	+		HSERO_RS17435	0.50	-1.1
4,002,457	+		HSERO_RS17435	0.54	-1.1
4,002,504	-		HSERO_RS17435	0.59	-1.0
4,002,509	-		HSERO_RS17435	0.59	-0.1
4,002,536	+		HSERO_RS17435	0.62	-1.7
4,002,544	-		HSERO_RS17435	0.63	+0.5
4,002,741	+		HSERO_RS17435	0.84	-0.8
4,002,800	-				+0.0
4,002,822	+				+0.1
4,002,854	+				-0.1
4,002,884	+				-1.0
4,002,953	+				-1.0
4,002,985	+				-0.7
4,002,992	+				+4.3
4,003,000	-				-0.6
4,003,000	-				-0.3
4,003,033	+				-0.5
4,003,045	-				+2.2
4,003,045	-				-0.6
4,003,110	+				-0.7
4,003,112	-				-0.2
4,003,118	-				+0.4
4,003,118	-				-1.6
4,003,238	+		HSERO_RS17440	0.23	-0.3
4,003,254	-		HSERO_RS17440	0.25	+0.2
4,003,282	+		HSERO_RS17440	0.29	+0.2
4,003,308	-		HSERO_RS17440	0.33	-0.7
4,003,390	+		HSERO_RS17440	0.45	+0.1
4,003,415	+		HSERO_RS17440	0.49	-0.2
4,003,423	+		HSERO_RS17440	0.50	+0.0
4,003,434	+		HSERO_RS17440	0.51	+1.6
4,003,447	-		HSERO_RS17440	0.53	-0.2
4,003,474	-		HSERO_RS17440	0.57	-0.2
4,003,509	+		HSERO_RS17440	0.62	+0.2
4,003,522	-		HSERO_RS17440	0.64	+1.2
4,003,527	-		HSERO_RS17440	0.65	-0.1
4,003,532	-		HSERO_RS17440	0.66	+0.5
4,003,533	+		HSERO_RS17440	0.66	+1.0
4,003,539	-		HSERO_RS17440	0.67	-0.7
4,003,543	+		HSERO_RS17440	0.67	-0.5
4,003,571	-		HSERO_RS17440	0.71	-0.2
4,003,571	-		HSERO_RS17440	0.71	-0.5
4,003,633	+		HSERO_RS17440	0.80	+0.9
4,003,641	-		HSERO_RS17440	0.82	-0.4
4,003,641	-		HSERO_RS17440	0.82	+1.2
4,003,663	+		HSERO_RS17440	0.85	-0.1
4,003,710	-				+0.3
4,003,751	+				-1.2
4,003,759	-				+0.2
4,003,759	-				-0.3
4,003,759	-				-1.1
4,003,759	-				-0.4
4,003,759	-				-0.2
4,003,772	+				-0.1
4,003,809	+				+1.0
4,003,809	+				+0.2
4,003,809	+				-3.6
4,003,817	-				-0.7
4,003,836	-				-0.3
4,003,842	+				-0.9
4,003,842	+				-0.0
4,003,842	+				+0.5
4,003,842	+				+0.5
4,003,842	+				-0.5
4,003,842	+				-0.3
4,003,842	+				+0.6
4,003,842	+				+0.4
4,003,842	+				-1.2
4,003,842	+				+0.0
4,003,842	+				-1.0
4,003,842	+				-0.6
4,003,842	+				+0.9
4,003,842	+				+3.5
4,003,842	+				+0.0
4,003,842	+				+0.9
4,003,842	+				-0.5
4,003,842	+				+0.8
4,003,842	+				+0.0
4,003,842	+				-1.7
4,003,842	+				+0.3
4,003,842	+				-0.4
4,003,842	+				+0.1
4,003,849	-				+0.1
4,003,850	-				-1.1
4,003,850	-				+0.6
4,003,850	-				+0.4
4,003,850	-				-0.8
4,003,850	-				-0.5
4,003,850	-				+0.0
4,003,850	-				+0.5
4,003,850	-				-0.4
4,003,850	-				-1.1
4,003,860	+				-0.3
4,003,864	+				-0.5
4,003,891	+				+1.9
4,003,891	+				-1.0
4,003,909	+				-1.4
4,003,909	+				-1.1
4,003,909	+				+1.0
4,003,909	+				-1.2
4,003,909	+				+0.7
4,003,909	+				-0.2
4,003,909	+				+1.4
4,003,909	+				+0.6
4,003,909	+				-3.1
4,003,909	+				-0.4
4,003,909	+				-1.1
4,003,917	-				-0.6
4,003,917	-				+0.2
4,003,917	-				-0.6
4,003,917	-				-0.3
4,003,917	-				-0.2
4,003,917	-				+0.6
4,003,919	+				-0.4
4,003,919	+				-0.7
4,003,919	+				+0.2
4,003,919	+				+2.0
4,003,919	+				-0.1
4,003,919	+				-0.4
4,003,919	+				-0.5
4,003,919	+				-0.2
4,003,919	+				+2.7
4,003,919	+				-0.5
4,003,919	+				-0.3
4,003,926	+				+1.2
4,003,927	-				+0.7
4,003,927	-				-0.8
4,003,927	-				+0.3
4,003,927	-				-0.2
4,003,927	-				-0.3
4,003,927	-				+0.1
4,003,927	-				-0.4
4,003,927	-				+0.5
4,003,927	-				-0.3
4,003,927	-				+0.0
4,003,927	-				-0.3
4,003,927	-				-0.1
4,003,927	-				-0.1
4,003,927	-				-0.2
4,003,927	-				-0.3
4,003,927	-				-0.8
4,003,927	-				+0.2
4,003,927	-				-0.2
4,003,927	-				+0.0
4,003,927	-				-0.7
4,003,927	-				-0.1
4,003,934	-				+0.5
4,003,949	+				-0.1
4,003,967	+				+0.2
4,003,968	+				-0.7
4,003,985	+				+0.7
4,003,985	+				+0.1
4,003,985	+				-1.1
4,003,993	-				-0.3
4,004,051	+				-0.4
4,004,055	+				-0.9
4,004,061	-				+0.3
4,004,063	-				+0.2
4,004,065	+				-0.6
4,004,113	-		HSERO_RS17445	0.11	-1.9
4,004,176	+		HSERO_RS17445	0.21	+0.3
4,004,184	-		HSERO_RS17445	0.22	+2.0
4,004,197	+		HSERO_RS17445	0.24	+0.6
4,004,202	+		HSERO_RS17445	0.25	-2.0
4,004,230	+		HSERO_RS17445	0.29	-0.4
4,004,238	+		HSERO_RS17445	0.30	+0.6
4,004,238	-		HSERO_RS17445	0.30	-0.0
4,004,333	+		HSERO_RS17445	0.45	-0.6
4,004,341	+		HSERO_RS17445	0.46	+1.0
4,004,341	+		HSERO_RS17445	0.46	-0.8
4,004,341	+		HSERO_RS17445	0.46	-0.1
4,004,346	+		HSERO_RS17445	0.47	-0.4
4,004,346	+		HSERO_RS17445	0.47	-2.8
4,004,348	-		HSERO_RS17445	0.47	-0.4
4,004,348	-		HSERO_RS17445	0.47	-0.7
4,004,349	-		HSERO_RS17445	0.47	+0.2
4,004,349	-		HSERO_RS17445	0.47	-1.0
4,004,349	-		HSERO_RS17445	0.47	-0.9
4,004,349	-		HSERO_RS17445	0.47	+0.2
4,004,354	-		HSERO_RS17445	0.48	-0.9
4,004,354	-		HSERO_RS17445	0.48	+0.8
4,004,354	-		HSERO_RS17445	0.48	+0.1
4,004,356	+		HSERO_RS17445	0.48	+0.1
4,004,359	+		HSERO_RS17445	0.49	-0.3
4,004,387	-		HSERO_RS17445	0.53	-0.3
4,004,413	+		HSERO_RS17445	0.57	-0.1
4,004,418	+		HSERO_RS17445	0.58	+0.6
4,004,418	+		HSERO_RS17445	0.58	+0.5
4,004,418	+		HSERO_RS17445	0.58	+0.8
4,004,418	+		HSERO_RS17445	0.58	-0.1
4,004,426	-		HSERO_RS17445	0.59	+0.5
4,004,426	-		HSERO_RS17445	0.59	-0.4
4,004,428	+		HSERO_RS17445	0.59	-0.2
4,004,428	+		HSERO_RS17445	0.59	-0.1
4,004,429	+		HSERO_RS17445	0.59	-1.1
4,004,483	-		HSERO_RS17445	0.68	+0.1
4,004,501	-		HSERO_RS17445	0.70	-1.8
4,004,530	-		HSERO_RS17445	0.75	+0.5
4,004,535	-		HSERO_RS17445	0.76	-1.0
4,004,554	+		HSERO_RS17445	0.78	+1.3
4,004,559	+		HSERO_RS17445	0.79	+0.1
4,004,567	-		HSERO_RS17445	0.80	-0.2
4,004,567	-		HSERO_RS17445	0.80	-0.4
4,004,583	-		HSERO_RS17445	0.83	-0.4
4,004,583	-		HSERO_RS17445	0.83	+0.4
4,004,587	+		HSERO_RS17445	0.83	-0.2
4,004,587	+		HSERO_RS17445	0.83	-0.9
4,004,587	+		HSERO_RS17445	0.83	-0.0
4,004,587	+		HSERO_RS17445	0.83	-0.7
4,004,587	+		HSERO_RS17445	0.83	-0.6
4,004,587	+		HSERO_RS17445	0.83	+0.9
4,004,590	-		HSERO_RS17445	0.84	-1.0
4,004,592	+		HSERO_RS17445	0.84	-0.0
4,004,595	-		HSERO_RS17445	0.85	+1.8
4,004,600	+		HSERO_RS17445	0.85	-0.4
4,004,600	+		HSERO_RS17445	0.85	-0.6
4,004,631	-				-0.9
4,004,632	+				-0.7
4,004,637	+				+0.8
4,004,637	+				+0.2
4,004,637	+				-1.9
4,004,637	+				+0.2
4,004,638	+				+2.9
4,004,645	+				-0.2
4,004,645	-				+0.1
4,004,645	-				-0.4
4,004,645	-				+0.3
4,004,645	-				+0.1
4,004,645	-				-1.3
4,004,645	-				-2.5
4,004,646	-				-1.6
4,004,650	-				-1.1
4,004,652	+				+0.0
4,004,652	+				+1.0
4,004,652	+				-0.0
4,004,652	+				-1.1
4,004,652	+				-0.4
4,004,653	-				-1.3
4,004,655	+				-0.6
4,004,655	-				+1.0
4,004,660	-				-0.5
4,004,660	-				+0.1
4,004,660	-				+0.4
4,004,660	-				+0.5
4,004,660	-				-1.6
4,004,660	-				+0.4
4,004,664	+				-1.1
4,004,667	+				-1.0
4,004,676	-				+0.2
4,004,681	-				+0.5
4,004,700	-				-1.1
4,004,720	-				+0.4
4,004,735	-				+0.0
4,004,759	+				+2.2
4,004,766	+				-0.1