Experiment: Taped volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS04490 and HSERO_RS04495 overlap by 4 nucleotides HSERO_RS04495 and HSERO_RS04500 overlap by 4 nucleotides HSERO_RS04500 and HSERO_RS04505 are separated by 147 nucleotides HSERO_RS04505 and HSERO_RS04510 are separated by 30 nucleotides HSERO_RS04510 and HSERO_RS04515 overlap by 4 nucleotides
HSERO_RS04490: HSERO_RS04490 - baseplate assembly protein, at 987,390 to 988,313
_RS04490
HSERO_RS04495: HSERO_RS04495 - oxidoreductase, at 988,310 to 988,654
_RS04495
HSERO_RS04500: HSERO_RS04500 - oxidoreductase, at 988,651 to 989,295
_RS04500
HSERO_RS04505: HSERO_RS04505 - hypothetical protein, at 989,443 to 989,748
_RS04505
HSERO_RS04510: HSERO_RS04510 - tail protein, at 989,779 to 990,246
_RS04510
HSERO_RS04515: HSERO_RS04515 - tail fiber protein, at 990,243 to 990,728
_RS04515
Position (kb) 988
989
990 Strain fitness (log2 ratio) -2
-1
0
1 at 987.689 kb on - strand, within HSERO_RS04490 at 987.691 kb on + strand, within HSERO_RS04490 at 987.699 kb on - strand, within HSERO_RS04490 at 987.778 kb on + strand, within HSERO_RS04490 at 987.852 kb on + strand, within HSERO_RS04490 at 987.854 kb on + strand, within HSERO_RS04490 at 987.954 kb on + strand, within HSERO_RS04490 at 988.054 kb on - strand, within HSERO_RS04490 at 988.167 kb on + strand, within HSERO_RS04490 at 988.303 kb on + strand at 988.331 kb on + strand at 988.331 kb on + strand at 988.615 kb on + strand, within HSERO_RS04495 at 988.800 kb on + strand, within HSERO_RS04500 at 989.050 kb on - strand, within HSERO_RS04500 at 989.050 kb on - strand, within HSERO_RS04500 at 989.064 kb on - strand, within HSERO_RS04500 at 989.099 kb on + strand, within HSERO_RS04500 at 989.219 kb on + strand, within HSERO_RS04500 at 989.272 kb on - strand at 989.274 kb on + strand at 989.342 kb on + strand at 989.361 kb on + strand at 989.417 kb on + strand at 989.417 kb on + strand at 989.430 kb on - strand at 989.516 kb on - strand, within HSERO_RS04505 at 989.572 kb on + strand, within HSERO_RS04505 at 989.593 kb on - strand, within HSERO_RS04505 at 989.635 kb on - strand, within HSERO_RS04505 at 989.655 kb on + strand, within HSERO_RS04505 at 989.657 kb on - strand, within HSERO_RS04505 at 989.718 kb on - strand at 989.727 kb on + strand at 989.728 kb on - strand at 989.745 kb on - strand at 989.765 kb on - strand at 989.857 kb on - strand, within HSERO_RS04510 at 989.961 kb on - strand, within HSERO_RS04510 at 990.287 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Taped volatile agar plate with no fungus remove 987,689 - HSERO_RS04490 0.32 -0.5 987,691 + HSERO_RS04490 0.33 +0.5 987,699 - HSERO_RS04490 0.33 +0.2 987,778 + HSERO_RS04490 0.42 +1.3 987,852 + HSERO_RS04490 0.50 +1.2 987,854 + HSERO_RS04490 0.50 +0.2 987,954 + HSERO_RS04490 0.61 -0.6 988,054 - HSERO_RS04490 0.72 +0.4 988,167 + HSERO_RS04490 0.84 -1.7 988,303 + -0.8 988,331 + -1.1 988,331 + -0.4 988,615 + HSERO_RS04495 0.88 -0.5 988,800 + HSERO_RS04500 0.23 -1.6 989,050 - HSERO_RS04500 0.62 +0.5 989,050 - HSERO_RS04500 0.62 -0.9 989,064 - HSERO_RS04500 0.64 -1.8 989,099 + HSERO_RS04500 0.69 -0.1 989,219 + HSERO_RS04500 0.88 -0.2 989,272 - -1.0 989,274 + +0.1 989,342 + +0.1 989,361 + -0.2 989,417 + -0.8 989,417 + +0.5 989,430 - -0.8 989,516 - HSERO_RS04505 0.24 +0.0 989,572 + HSERO_RS04505 0.42 +0.3 989,593 - HSERO_RS04505 0.49 +0.2 989,635 - HSERO_RS04505 0.63 -0.7 989,655 + HSERO_RS04505 0.69 -1.6 989,657 - HSERO_RS04505 0.70 -0.8 989,718 - +0.7 989,727 + -0.1 989,728 - +0.2 989,745 - -0.4 989,765 - +0.3 989,857 - HSERO_RS04510 0.17 +0.8 989,961 - HSERO_RS04510 0.39 -1.6 990,287 - +1.6
Or see this region's nucleotide sequence