Experiment: Taped volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS00195 and HSERO_RS00200 are separated by 173 nucleotides HSERO_RS00200 and HSERO_RS00205 are separated by 196 nucleotides
HSERO_RS00195: HSERO_RS00195 - acetyl-CoA hydrolase, at 51,384 to 52,886
_RS00195
HSERO_RS00200: HSERO_RS00200 - LysR family transcriptional regulator, at 53,060 to 53,965
_RS00200
HSERO_RS00205: HSERO_RS00205 - membrane protein, at 54,162 to 56,297
_RS00205
Position (kb) 53
54 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 52.079 kb on - strand, within HSERO_RS00195 at 52.105 kb on + strand, within HSERO_RS00195 at 52.214 kb on - strand, within HSERO_RS00195 at 52.258 kb on + strand, within HSERO_RS00195 at 52.285 kb on - strand, within HSERO_RS00195 at 52.302 kb on + strand, within HSERO_RS00195 at 52.359 kb on - strand, within HSERO_RS00195 at 52.427 kb on + strand at 52.478 kb on - strand, within HSERO_RS00195 at 52.531 kb on - strand, within HSERO_RS00195 at 52.627 kb on + strand, within HSERO_RS00195 at 52.727 kb on - strand, within HSERO_RS00195 at 52.756 kb on + strand at 52.759 kb on - strand at 52.953 kb on + strand at 52.965 kb on + strand at 53.039 kb on - strand at 53.096 kb on - strand at 53.117 kb on - strand at 53.230 kb on + strand, within HSERO_RS00200 at 53.391 kb on - strand, within HSERO_RS00200 at 53.592 kb on + strand, within HSERO_RS00200 at 53.622 kb on - strand, within HSERO_RS00200 at 53.750 kb on + strand, within HSERO_RS00200 at 53.779 kb on - strand, within HSERO_RS00200 at 53.905 kb on - strand at 53.905 kb on - strand at 53.927 kb on - strand at 53.955 kb on - strand at 54.027 kb on + strand at 54.027 kb on + strand at 54.035 kb on - strand at 54.035 kb on - strand at 54.047 kb on + strand at 54.050 kb on - strand at 54.050 kb on - strand at 54.057 kb on + strand at 54.135 kb on - strand at 54.249 kb on + strand at 54.294 kb on - strand at 54.443 kb on - strand, within HSERO_RS00205 at 54.466 kb on + strand, within HSERO_RS00205 at 54.511 kb on + strand, within HSERO_RS00205 at 54.511 kb on + strand, within HSERO_RS00205 at 54.830 kb on + strand, within HSERO_RS00205 at 54.861 kb on - strand, within HSERO_RS00205 at 54.955 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Taped volatile agar plate with no fungus remove 52,079 - HSERO_RS00195 0.46 -0.3 52,105 + HSERO_RS00195 0.48 +0.8 52,214 - HSERO_RS00195 0.55 +0.8 52,258 + HSERO_RS00195 0.58 -1.1 52,285 - HSERO_RS00195 0.60 -2.2 52,302 + HSERO_RS00195 0.61 -0.3 52,359 - HSERO_RS00195 0.65 +1.6 52,427 + +1.0 52,478 - HSERO_RS00195 0.73 -1.2 52,531 - HSERO_RS00195 0.76 -0.3 52,627 + HSERO_RS00195 0.83 +0.0 52,727 - HSERO_RS00195 0.89 -1.4 52,756 + +0.1 52,759 - +0.2 52,953 + -0.9 52,965 + -0.4 53,039 - -0.2 53,096 - +0.2 53,117 - -0.0 53,230 + HSERO_RS00200 0.19 -1.1 53,391 - HSERO_RS00200 0.37 -0.0 53,592 + HSERO_RS00200 0.59 -1.2 53,622 - HSERO_RS00200 0.62 -1.8 53,750 + HSERO_RS00200 0.76 -1.5 53,779 - HSERO_RS00200 0.79 +0.1 53,905 - +0.0 53,905 - +0.2 53,927 - -0.6 53,955 - -1.6 54,027 + +0.1 54,027 + -3.1 54,035 - +0.4 54,035 - -0.2 54,047 + -0.0 54,050 - -0.1 54,050 - -0.3 54,057 + -0.2 54,135 - +0.9 54,249 + +0.7 54,294 - -0.3 54,443 - HSERO_RS00205 0.13 -0.2 54,466 + HSERO_RS00205 0.14 -1.9 54,511 + HSERO_RS00205 0.16 -0.3 54,511 + HSERO_RS00205 0.16 -0.8 54,830 + HSERO_RS00205 0.31 +0.7 54,861 - HSERO_RS00205 0.33 -0.1 54,955 + +1.5
Or see this region's nucleotide sequence