Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS21130 and ABZR87_RS21135 are separated by 347 nucleotides ABZR87_RS21135 and ABZR87_RS21140 are separated by 49 nucleotides ABZR87_RS21140 and ABZR87_RS21145 are separated by 101 nucleotides
ABZR87_RS21130: ABZR87_RS21130 - RNA polymerase sigma factor, at 1,124,749 to 1,126,032
_RS21130
ABZR87_RS21135: ABZR87_RS21135 - FMN reductase, at 1,126,380 to 1,126,961
_RS21135
ABZR87_RS21140: ABZR87_RS21140 - dimethylsulfone monooxygenase SfnG, at 1,127,011 to 1,128,174
_RS21140
ABZR87_RS21145: ABZR87_RS21145 - ABC transporter ATP-binding protein, at 1,128,276 to 1,129,190
_RS21145
Position (kb)
1127
1128
1129 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1126.200 kb on + strand at 1126.201 kb on - strand at 1126.216 kb on - strand at 1126.216 kb on - strand at 1126.239 kb on + strand at 1126.240 kb on - strand at 1126.241 kb on + strand at 1126.242 kb on - strand at 1126.257 kb on + strand at 1126.257 kb on + strand at 1126.258 kb on - strand at 1126.261 kb on + strand at 1126.262 kb on - strand at 1126.262 kb on - strand at 1126.262 kb on - strand at 1126.444 kb on + strand, within ABZR87_RS21135 at 1126.445 kb on - strand, within ABZR87_RS21135 at 1126.545 kb on + strand, within ABZR87_RS21135 at 1126.641 kb on + strand, within ABZR87_RS21135 at 1126.642 kb on - strand, within ABZR87_RS21135 at 1126.812 kb on + strand, within ABZR87_RS21135 at 1126.813 kb on - strand, within ABZR87_RS21135 at 1126.813 kb on - strand, within ABZR87_RS21135 at 1127.037 kb on + strand at 1127.038 kb on - strand at 1127.122 kb on + strand at 1127.123 kb on - strand at 1127.123 kb on - strand at 1127.168 kb on - strand, within ABZR87_RS21140 at 1127.201 kb on - strand, within ABZR87_RS21140 at 1127.441 kb on - strand, within ABZR87_RS21140 at 1127.533 kb on + strand, within ABZR87_RS21140 at 1128.055 kb on - strand, within ABZR87_RS21140 at 1128.555 kb on + strand, within ABZR87_RS21145 at 1128.555 kb on + strand, within ABZR87_RS21145 at 1128.802 kb on + strand, within ABZR87_RS21145 at 1128.803 kb on - strand, within ABZR87_RS21145 at 1128.913 kb on + strand, within ABZR87_RS21145 at 1128.913 kb on + strand, within ABZR87_RS21145 at 1128.913 kb on + strand, within ABZR87_RS21145 at 1128.913 kb on + strand, within ABZR87_RS21145 at 1129.143 kb on + strand at 1129.143 kb on + strand at 1129.144 kb on - strand at 1129.144 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 1,126,200 + -0.3 1,126,201 - +0.6 1,126,216 - -1.1 1,126,216 - -0.3 1,126,239 + +0.7 1,126,240 - -0.6 1,126,241 + +0.5 1,126,242 - -0.1 1,126,257 + +0.4 1,126,257 + +1.6 1,126,258 - +0.2 1,126,261 + +0.5 1,126,262 - +0.8 1,126,262 - +0.1 1,126,262 - -0.1 1,126,444 + ABZR87_RS21135 0.11 -0.7 1,126,445 - ABZR87_RS21135 0.11 -1.6 1,126,545 + ABZR87_RS21135 0.28 -0.8 1,126,641 + ABZR87_RS21135 0.45 +0.5 1,126,642 - ABZR87_RS21135 0.45 +1.1 1,126,812 + ABZR87_RS21135 0.74 -3.7 1,126,813 - ABZR87_RS21135 0.74 +0.2 1,126,813 - ABZR87_RS21135 0.74 -1.4 1,127,037 + +1.0 1,127,038 - +0.2 1,127,122 + +0.4 1,127,123 - -0.3 1,127,123 - +1.1 1,127,168 - ABZR87_RS21140 0.13 -0.4 1,127,201 - ABZR87_RS21140 0.16 -0.4 1,127,441 - ABZR87_RS21140 0.37 -0.3 1,127,533 + ABZR87_RS21140 0.45 +0.1 1,128,055 - ABZR87_RS21140 0.90 +0.3 1,128,555 + ABZR87_RS21145 0.30 +0.7 1,128,555 + ABZR87_RS21145 0.30 -0.2 1,128,802 + ABZR87_RS21145 0.57 +0.5 1,128,803 - ABZR87_RS21145 0.58 -0.1 1,128,913 + ABZR87_RS21145 0.70 +0.4 1,128,913 + ABZR87_RS21145 0.70 +1.4 1,128,913 + ABZR87_RS21145 0.70 +1.0 1,128,913 + ABZR87_RS21145 0.70 +0.9 1,129,143 + -0.3 1,129,143 + +0.7 1,129,144 - +0.6 1,129,144 - +0.5
Or see this region's nucleotide sequence