Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS20350

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS20345 and ABZR87_RS20350 are separated by 117 nucleotidesABZR87_RS20350 and ABZR87_RS20355 are separated by 55 nucleotidesABZR87_RS20355 and ABZR87_RS20360 overlap by 4 nucleotides ABZR87_RS20345: ABZR87_RS20345 - SMP-30/gluconolactonase/LRE family protein, at 953,835 to 954,896 _RS20345 ABZR87_RS20350: ABZR87_RS20350 - LysR substrate-binding domain-containing protein, at 955,014 to 955,910 _RS20350 ABZR87_RS20355: ABZR87_RS20355 - hypothetical protein, at 955,966 to 956,331 _RS20355 ABZR87_RS20360: ABZR87_RS20360 - ABC transporter substrate-binding protein, at 956,328 to 957,269 _RS20360 Position (kb) 955 956Strain fitness (log2 ratio) -1 0 1at 954.154 kb on + strand, within ABZR87_RS20345at 954.154 kb on + strand, within ABZR87_RS20345at 954.154 kb on + strand, within ABZR87_RS20345at 954.154 kb on + strand, within ABZR87_RS20345at 954.155 kb on - strand, within ABZR87_RS20345at 954.155 kb on - strand, within ABZR87_RS20345at 954.155 kb on - strand, within ABZR87_RS20345at 954.199 kb on + strand, within ABZR87_RS20345at 954.199 kb on + strand, within ABZR87_RS20345at 954.199 kb on + strand, within ABZR87_RS20345at 954.199 kb on + strand, within ABZR87_RS20345at 954.200 kb on - strand, within ABZR87_RS20345at 954.200 kb on - strand, within ABZR87_RS20345at 954.200 kb on - strand, within ABZR87_RS20345at 954.434 kb on - strand, within ABZR87_RS20345at 954.434 kb on - strand, within ABZR87_RS20345at 954.537 kb on - strand, within ABZR87_RS20345at 954.537 kb on - strand, within ABZR87_RS20345at 954.550 kb on + strand, within ABZR87_RS20345at 954.598 kb on + strand, within ABZR87_RS20345at 954.640 kb on + strand, within ABZR87_RS20345at 954.640 kb on + strand, within ABZR87_RS20345at 954.640 kb on + strand, within ABZR87_RS20345at 954.640 kb on + strand, within ABZR87_RS20345at 954.659 kb on - strand, within ABZR87_RS20345at 954.702 kb on + strand, within ABZR87_RS20345at 954.715 kb on + strand, within ABZR87_RS20345at 954.716 kb on - strand, within ABZR87_RS20345at 954.724 kb on + strand, within ABZR87_RS20345at 955.596 kb on + strand, within ABZR87_RS20350at 955.596 kb on + strand, within ABZR87_RS20350at 955.596 kb on + strand, within ABZR87_RS20350at 955.597 kb on - strand, within ABZR87_RS20350at 955.597 kb on - strand, within ABZR87_RS20350at 955.597 kb on - strand, within ABZR87_RS20350at 955.597 kb on - strand, within ABZR87_RS20350at 955.618 kb on - strand, within ABZR87_RS20350at 955.618 kb on - strand, within ABZR87_RS20350at 955.681 kb on - strand, within ABZR87_RS20350at 955.782 kb on + strand, within ABZR87_RS20350at 955.783 kb on - strand, within ABZR87_RS20350at 956.554 kb on + strand, within ABZR87_RS20360at 956.554 kb on + strand, within ABZR87_RS20360at 956.554 kb on + strand, within ABZR87_RS20360at 956.554 kb on + strand, within ABZR87_RS20360at 956.555 kb on - strand, within ABZR87_RS20360at 956.644 kb on + strand, within ABZR87_RS20360at 956.644 kb on + strand, within ABZR87_RS20360at 956.645 kb on - strand, within ABZR87_RS20360at 956.645 kb on - strand, within ABZR87_RS20360at 956.720 kb on - strand, within ABZR87_RS20360at 956.877 kb on - strand, within ABZR87_RS20360

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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954,154 + ABZR87_RS20345 0.30 +0.7
954,154 + ABZR87_RS20345 0.30 -0.3
954,154 + ABZR87_RS20345 0.30 +0.3
954,154 + ABZR87_RS20345 0.30 +1.3
954,155 - ABZR87_RS20345 0.30 +0.1
954,155 - ABZR87_RS20345 0.30 -1.3
954,155 - ABZR87_RS20345 0.30 +0.8
954,199 + ABZR87_RS20345 0.34 +0.4
954,199 + ABZR87_RS20345 0.34 -0.0
954,199 + ABZR87_RS20345 0.34 +0.3
954,199 + ABZR87_RS20345 0.34 -0.3
954,200 - ABZR87_RS20345 0.34 +0.9
954,200 - ABZR87_RS20345 0.34 -0.2
954,200 - ABZR87_RS20345 0.34 +0.0
954,434 - ABZR87_RS20345 0.56 +1.3
954,434 - ABZR87_RS20345 0.56 +1.0
954,537 - ABZR87_RS20345 0.66 -0.5
954,537 - ABZR87_RS20345 0.66 +1.2
954,550 + ABZR87_RS20345 0.67 +0.5
954,598 + ABZR87_RS20345 0.72 +0.6
954,640 + ABZR87_RS20345 0.76 +1.1
954,640 + ABZR87_RS20345 0.76 -0.4
954,640 + ABZR87_RS20345 0.76 +0.9
954,640 + ABZR87_RS20345 0.76 -0.2
954,659 - ABZR87_RS20345 0.78 +0.1
954,702 + ABZR87_RS20345 0.82 -1.0
954,715 + ABZR87_RS20345 0.83 -0.1
954,716 - ABZR87_RS20345 0.83 +1.6
954,724 + ABZR87_RS20345 0.84 -0.6
955,596 + ABZR87_RS20350 0.65 +1.1
955,596 + ABZR87_RS20350 0.65 +0.4
955,596 + ABZR87_RS20350 0.65 +1.3
955,597 - ABZR87_RS20350 0.65 -0.7
955,597 - ABZR87_RS20350 0.65 +0.7
955,597 - ABZR87_RS20350 0.65 +1.0
955,597 - ABZR87_RS20350 0.65 +0.0
955,618 - ABZR87_RS20350 0.67 +0.1
955,618 - ABZR87_RS20350 0.67 -0.4
955,681 - ABZR87_RS20350 0.74 +0.7
955,782 + ABZR87_RS20350 0.86 +1.7
955,783 - ABZR87_RS20350 0.86 -0.4
956,554 + ABZR87_RS20360 0.24 -0.4
956,554 + ABZR87_RS20360 0.24 -0.1
956,554 + ABZR87_RS20360 0.24 +0.6
956,554 + ABZR87_RS20360 0.24 +0.2
956,555 - ABZR87_RS20360 0.24 +0.2
956,644 + ABZR87_RS20360 0.34 +0.2
956,644 + ABZR87_RS20360 0.34 -0.8
956,645 - ABZR87_RS20360 0.34 -1.3
956,645 - ABZR87_RS20360 0.34 -0.5
956,720 - ABZR87_RS20360 0.42 -1.3
956,877 - ABZR87_RS20360 0.58 +0.3

Or see this region's nucleotide sequence