Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS19785

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS19775 and ABZR87_RS19780 are separated by 140 nucleotidesABZR87_RS19780 and ABZR87_RS19785 are separated by 11 nucleotidesABZR87_RS19785 and ABZR87_RS19790 are separated by 110 nucleotidesABZR87_RS19790 and ABZR87_RS19795 are separated by 165 nucleotides ABZR87_RS19775: ABZR87_RS19775 - DMT family transporter, at 809,345 to 810,247 _RS19775 ABZR87_RS19780: ABZR87_RS19780 - Lrp/AsnC family transcriptional regulator, at 810,388 to 810,834 _RS19780 ABZR87_RS19785: ABZR87_RS19785 - cystathionine beta-lyase, at 810,846 to 812,024 _RS19785 ABZR87_RS19790: ABZR87_RS19790 - Lrp/AsnC family transcriptional regulator, at 812,135 to 812,611 _RS19790 ABZR87_RS19795: ABZR87_RS19795 - gamma-glutamyltransferase, at 812,777 to 814,486 _RS19795 Position (kb) 810 811 812 813Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 809.953 kb on - strand, within ABZR87_RS19775at 809.953 kb on - strand, within ABZR87_RS19775at 809.988 kb on + strand, within ABZR87_RS19775at 810.098 kb on + strand, within ABZR87_RS19775at 810.098 kb on + strand, within ABZR87_RS19775at 810.098 kb on + strand, within ABZR87_RS19775at 810.099 kb on - strand, within ABZR87_RS19775at 810.199 kb on + strandat 810.199 kb on + strandat 810.199 kb on + strandat 810.199 kb on + strandat 810.200 kb on - strandat 810.200 kb on - strandat 810.200 kb on - strandat 810.200 kb on - strandat 810.200 kb on - strandat 810.200 kb on - strandat 810.200 kb on - strandat 810.238 kb on + strandat 810.239 kb on - strandat 810.332 kb on + strandat 810.333 kb on - strandat 810.333 kb on - strandat 810.538 kb on + strand, within ABZR87_RS19780at 810.538 kb on + strand, within ABZR87_RS19780at 810.538 kb on + strand, within ABZR87_RS19780at 810.539 kb on - strand, within ABZR87_RS19780at 810.539 kb on - strand, within ABZR87_RS19780at 810.539 kb on - strand, within ABZR87_RS19780at 810.539 kb on - strand, within ABZR87_RS19780at 810.571 kb on + strand, within ABZR87_RS19780at 810.572 kb on - strand, within ABZR87_RS19780at 810.622 kb on - strand, within ABZR87_RS19780at 810.622 kb on - strand, within ABZR87_RS19780at 810.622 kb on - strand, within ABZR87_RS19780at 810.706 kb on + strand, within ABZR87_RS19780at 810.706 kb on + strand, within ABZR87_RS19780at 810.706 kb on + strand, within ABZR87_RS19780at 810.707 kb on - strand, within ABZR87_RS19780at 810.707 kb on - strand, within ABZR87_RS19780at 810.707 kb on - strand, within ABZR87_RS19780at 810.707 kb on - strand, within ABZR87_RS19780at 810.707 kb on - strand, within ABZR87_RS19780at 810.707 kb on - strand, within ABZR87_RS19780at 810.754 kb on + strand, within ABZR87_RS19780at 810.754 kb on + strand, within ABZR87_RS19780at 810.771 kb on + strand, within ABZR87_RS19780at 810.847 kb on + strandat 810.962 kb on - strandat 810.962 kb on - strandat 810.962 kb on - strandat 810.992 kb on - strand, within ABZR87_RS19785at 811.098 kb on + strand, within ABZR87_RS19785at 811.098 kb on + strand, within ABZR87_RS19785at 811.098 kb on + strand, within ABZR87_RS19785at 811.098 kb on + strand, within ABZR87_RS19785at 811.098 kb on + strand, within ABZR87_RS19785at 811.099 kb on - strand, within ABZR87_RS19785at 811.099 kb on - strand, within ABZR87_RS19785at 811.099 kb on - strand, within ABZR87_RS19785at 811.411 kb on + strand, within ABZR87_RS19785at 811.411 kb on + strand, within ABZR87_RS19785at 811.412 kb on - strand, within ABZR87_RS19785at 811.412 kb on - strand, within ABZR87_RS19785at 811.412 kb on - strand, within ABZR87_RS19785at 811.465 kb on + strand, within ABZR87_RS19785at 811.465 kb on + strand, within ABZR87_RS19785at 811.466 kb on - strand, within ABZR87_RS19785at 811.466 kb on - strand, within ABZR87_RS19785at 811.466 kb on - strand, within ABZR87_RS19785at 811.480 kb on + strand, within ABZR87_RS19785at 811.481 kb on - strand, within ABZR87_RS19785at 811.481 kb on - strand, within ABZR87_RS19785at 811.481 kb on - strand, within ABZR87_RS19785at 811.481 kb on - strand, within ABZR87_RS19785at 811.481 kb on - strand, within ABZR87_RS19785at 811.481 kb on - strand, within ABZR87_RS19785at 811.595 kb on + strand, within ABZR87_RS19785at 811.596 kb on - strand, within ABZR87_RS19785at 811.643 kb on - strand, within ABZR87_RS19785at 811.756 kb on + strand, within ABZR87_RS19785at 811.756 kb on - strand, within ABZR87_RS19785at 811.793 kb on + strand, within ABZR87_RS19785at 811.794 kb on - strand, within ABZR87_RS19785at 811.861 kb on + strand, within ABZR87_RS19785at 811.861 kb on + strand, within ABZR87_RS19785at 811.861 kb on + strand, within ABZR87_RS19785at 811.870 kb on + strand, within ABZR87_RS19785at 811.870 kb on + strand, within ABZR87_RS19785at 811.870 kb on + strand, within ABZR87_RS19785at 811.871 kb on - strand, within ABZR87_RS19785at 811.871 kb on - strand, within ABZR87_RS19785at 811.871 kb on - strand, within ABZR87_RS19785at 811.871 kb on - strand, within ABZR87_RS19785at 811.871 kb on - strand, within ABZR87_RS19785at 811.874 kb on + strand, within ABZR87_RS19785at 811.874 kb on + strand, within ABZR87_RS19785at 811.874 kb on + strand, within ABZR87_RS19785at 811.874 kb on + strand, within ABZR87_RS19785at 811.874 kb on + strand, within ABZR87_RS19785at 811.875 kb on - strand, within ABZR87_RS19785at 811.875 kb on - strand, within ABZR87_RS19785at 811.875 kb on - strand, within ABZR87_RS19785at 811.875 kb on - strand, within ABZR87_RS19785at 811.875 kb on - strand, within ABZR87_RS19785at 811.875 kb on - strand, within ABZR87_RS19785at 811.876 kb on + strand, within ABZR87_RS19785at 811.877 kb on - strand, within ABZR87_RS19785at 811.877 kb on - strand, within ABZR87_RS19785at 812.062 kb on - strandat 812.204 kb on + strand, within ABZR87_RS19790at 812.204 kb on + strand, within ABZR87_RS19790at 812.205 kb on - strand, within ABZR87_RS19790at 812.205 kb on - strand, within ABZR87_RS19790at 812.205 kb on - strand, within ABZR87_RS19790at 812.205 kb on - strand, within ABZR87_RS19790at 812.244 kb on + strand, within ABZR87_RS19790at 812.244 kb on + strand, within ABZR87_RS19790at 812.245 kb on - strand, within ABZR87_RS19790at 812.245 kb on - strand, within ABZR87_RS19790at 812.245 kb on - strand, within ABZR87_RS19790at 812.383 kb on + strand, within ABZR87_RS19790at 812.441 kb on + strand, within ABZR87_RS19790at 812.441 kb on + strand, within ABZR87_RS19790at 812.442 kb on - strand, within ABZR87_RS19790at 812.442 kb on - strand, within ABZR87_RS19790at 812.442 kb on - strand, within ABZR87_RS19790at 812.442 kb on - strand, within ABZR87_RS19790at 812.444 kb on + strand, within ABZR87_RS19790at 812.444 kb on + strand, within ABZR87_RS19790at 812.444 kb on + strand, within ABZR87_RS19790at 812.444 kb on + strand, within ABZR87_RS19790at 812.445 kb on - strand, within ABZR87_RS19790at 812.445 kb on - strand, within ABZR87_RS19790at 812.501 kb on + strand, within ABZR87_RS19790at 812.502 kb on - strand, within ABZR87_RS19790at 812.502 kb on - strand, within ABZR87_RS19790at 812.502 kb on - strand, within ABZR87_RS19790at 812.649 kb on + strandat 812.663 kb on + strandat 812.663 kb on + strandat 812.663 kb on + strandat 812.663 kb on + strandat 812.664 kb on - strandat 812.664 kb on - strandat 812.664 kb on - strandat 812.664 kb on - strandat 812.664 kb on - strandat 812.664 kb on - strandat 812.664 kb on - strandat 812.664 kb on - strandat 812.665 kb on + strandat 812.665 kb on + strandat 812.665 kb on + strandat 812.665 kb on + strandat 812.666 kb on - strandat 812.711 kb on + strandat 812.712 kb on - strandat 812.740 kb on + strandat 812.741 kb on - strandat 812.741 kb on - strandat 812.741 kb on - strandat 812.755 kb on + strandat 812.755 kb on + strandat 812.756 kb on - strandat 812.961 kb on - strand, within ABZR87_RS19795at 812.961 kb on - strand, within ABZR87_RS19795at 812.978 kb on + strand, within ABZR87_RS19795at 812.979 kb on - strand, within ABZR87_RS19795

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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809,953 - ABZR87_RS19775 0.67 -0.0
809,953 - ABZR87_RS19775 0.67 -0.0
809,988 + ABZR87_RS19775 0.71 +0.2
810,098 + ABZR87_RS19775 0.83 +1.0
810,098 + ABZR87_RS19775 0.83 -2.5
810,098 + ABZR87_RS19775 0.83 -0.5
810,099 - ABZR87_RS19775 0.83 -0.7
810,199 + +0.2
810,199 + -0.8
810,199 + +1.3
810,199 + -0.1
810,200 - -0.5
810,200 - -0.3
810,200 - -1.3
810,200 - -0.1
810,200 - -0.2
810,200 - -0.0
810,200 - +0.4
810,238 + +0.0
810,239 - +0.7
810,332 + +0.1
810,333 - -0.3
810,333 - -0.2
810,538 + ABZR87_RS19780 0.34 +0.9
810,538 + ABZR87_RS19780 0.34 +0.1
810,538 + ABZR87_RS19780 0.34 -1.2
810,539 - ABZR87_RS19780 0.34 -0.8
810,539 - ABZR87_RS19780 0.34 -0.2
810,539 - ABZR87_RS19780 0.34 -0.2
810,539 - ABZR87_RS19780 0.34 +0.1
810,571 + ABZR87_RS19780 0.41 -1.4
810,572 - ABZR87_RS19780 0.41 -2.8
810,622 - ABZR87_RS19780 0.52 +0.1
810,622 - ABZR87_RS19780 0.52 +2.2
810,622 - ABZR87_RS19780 0.52 -0.4
810,706 + ABZR87_RS19780 0.71 -0.3
810,706 + ABZR87_RS19780 0.71 -0.1
810,706 + ABZR87_RS19780 0.71 +0.3
810,707 - ABZR87_RS19780 0.71 -0.5
810,707 - ABZR87_RS19780 0.71 -0.1
810,707 - ABZR87_RS19780 0.71 -1.2
810,707 - ABZR87_RS19780 0.71 -0.5
810,707 - ABZR87_RS19780 0.71 -1.7
810,707 - ABZR87_RS19780 0.71 -1.7
810,754 + ABZR87_RS19780 0.82 +0.9
810,754 + ABZR87_RS19780 0.82 -0.3
810,771 + ABZR87_RS19780 0.86 -0.5
810,847 + -0.8
810,962 - -0.4
810,962 - -0.6
810,962 - +1.2
810,992 - ABZR87_RS19785 0.12 -1.6
811,098 + ABZR87_RS19785 0.21 -0.9
811,098 + ABZR87_RS19785 0.21 +0.1
811,098 + ABZR87_RS19785 0.21 -0.2
811,098 + ABZR87_RS19785 0.21 +1.5
811,098 + ABZR87_RS19785 0.21 +1.0
811,099 - ABZR87_RS19785 0.21 +1.1
811,099 - ABZR87_RS19785 0.21 -0.4
811,099 - ABZR87_RS19785 0.21 +0.0
811,411 + ABZR87_RS19785 0.48 -0.9
811,411 + ABZR87_RS19785 0.48 -0.2
811,412 - ABZR87_RS19785 0.48 +0.2
811,412 - ABZR87_RS19785 0.48 -1.2
811,412 - ABZR87_RS19785 0.48 +0.1
811,465 + ABZR87_RS19785 0.53 +0.0
811,465 + ABZR87_RS19785 0.53 -0.2
811,466 - ABZR87_RS19785 0.53 -1.0
811,466 - ABZR87_RS19785 0.53 +0.2
811,466 - ABZR87_RS19785 0.53 -0.4
811,480 + ABZR87_RS19785 0.54 -0.8
811,481 - ABZR87_RS19785 0.54 +0.1
811,481 - ABZR87_RS19785 0.54 +0.4
811,481 - ABZR87_RS19785 0.54 +0.5
811,481 - ABZR87_RS19785 0.54 -0.7
811,481 - ABZR87_RS19785 0.54 -0.1
811,481 - ABZR87_RS19785 0.54 -0.1
811,595 + ABZR87_RS19785 0.64 +0.1
811,596 - ABZR87_RS19785 0.64 -0.6
811,643 - ABZR87_RS19785 0.68 -3.1
811,756 + ABZR87_RS19785 0.77 -0.1
811,756 - ABZR87_RS19785 0.77 -0.7
811,793 + ABZR87_RS19785 0.80 -0.8
811,794 - ABZR87_RS19785 0.80 -0.5
811,861 + ABZR87_RS19785 0.86 +0.4
811,861 + ABZR87_RS19785 0.86 -0.0
811,861 + ABZR87_RS19785 0.86 -0.0
811,870 + ABZR87_RS19785 0.87 -0.0
811,870 + ABZR87_RS19785 0.87 -1.5
811,870 + ABZR87_RS19785 0.87 -1.2
811,871 - ABZR87_RS19785 0.87 -1.0
811,871 - ABZR87_RS19785 0.87 +0.0
811,871 - ABZR87_RS19785 0.87 -0.5
811,871 - ABZR87_RS19785 0.87 +0.4
811,871 - ABZR87_RS19785 0.87 +0.9
811,874 + ABZR87_RS19785 0.87 +0.1
811,874 + ABZR87_RS19785 0.87 -0.1
811,874 + ABZR87_RS19785 0.87 -0.4
811,874 + ABZR87_RS19785 0.87 +1.0
811,874 + ABZR87_RS19785 0.87 -0.2
811,875 - ABZR87_RS19785 0.87 +0.6
811,875 - ABZR87_RS19785 0.87 -0.7
811,875 - ABZR87_RS19785 0.87 -0.1
811,875 - ABZR87_RS19785 0.87 +0.2
811,875 - ABZR87_RS19785 0.87 +0.1
811,875 - ABZR87_RS19785 0.87 +0.9
811,876 + ABZR87_RS19785 0.87 +0.6
811,877 - ABZR87_RS19785 0.87 +0.2
811,877 - ABZR87_RS19785 0.87 -0.3
812,062 - +0.2
812,204 + ABZR87_RS19790 0.14 +0.8
812,204 + ABZR87_RS19790 0.14 -0.3
812,205 - ABZR87_RS19790 0.15 +0.8
812,205 - ABZR87_RS19790 0.15 -0.1
812,205 - ABZR87_RS19790 0.15 -1.1
812,205 - ABZR87_RS19790 0.15 +0.1
812,244 + ABZR87_RS19790 0.23 -0.3
812,244 + ABZR87_RS19790 0.23 -0.1
812,245 - ABZR87_RS19790 0.23 -1.3
812,245 - ABZR87_RS19790 0.23 -1.3
812,245 - ABZR87_RS19790 0.23 -0.2
812,383 + ABZR87_RS19790 0.52 -0.1
812,441 + ABZR87_RS19790 0.64 +0.9
812,441 + ABZR87_RS19790 0.64 -0.4
812,442 - ABZR87_RS19790 0.64 -0.5
812,442 - ABZR87_RS19790 0.64 +1.1
812,442 - ABZR87_RS19790 0.64 -0.5
812,442 - ABZR87_RS19790 0.64 +0.7
812,444 + ABZR87_RS19790 0.65 -0.5
812,444 + ABZR87_RS19790 0.65 -0.5
812,444 + ABZR87_RS19790 0.65 +0.9
812,444 + ABZR87_RS19790 0.65 -0.7
812,445 - ABZR87_RS19790 0.65 +0.1
812,445 - ABZR87_RS19790 0.65 +1.7
812,501 + ABZR87_RS19790 0.77 +0.1
812,502 - ABZR87_RS19790 0.77 -0.1
812,502 - ABZR87_RS19790 0.77 +0.2
812,502 - ABZR87_RS19790 0.77 +1.7
812,649 + -0.0
812,663 + -0.4
812,663 + +0.1
812,663 + +0.6
812,663 + -0.2
812,664 - -1.6
812,664 - -0.6
812,664 - -0.2
812,664 - +0.3
812,664 - -0.1
812,664 - -0.0
812,664 - -0.4
812,664 - -1.6
812,665 + +0.4
812,665 + +0.5
812,665 + -0.1
812,665 + +0.4
812,666 - -0.1
812,711 + +0.6
812,712 - +0.5
812,740 + +0.7
812,741 - +0.1
812,741 - -0.2
812,741 - -0.6
812,755 + +1.3
812,755 + +1.2
812,756 - +0.7
812,961 - ABZR87_RS19795 0.11 +0.2
812,961 - ABZR87_RS19795 0.11 +0.9
812,978 + ABZR87_RS19795 0.12 -0.0
812,979 - ABZR87_RS19795 0.12 +0.0

Or see this region's nucleotide sequence