Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19350 and ABZR87_RS19355 are separated by 148 nucleotides ABZR87_RS19355 and ABZR87_RS19360 are separated by 556 nucleotides
ABZR87_RS19350: ABZR87_RS19350 - putative hydro-lyase, at 707,077 to 707,904
_RS19350
ABZR87_RS19355: ABZR87_RS19355 - MFS transporter, at 708,053 to 709,354
_RS19355
ABZR87_RS19360: ABZR87_RS19360 - UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing), at 709,911 to 711,062
_RS19360
Position (kb) 708
709
710 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 707.135 kb on - strand at 707.135 kb on - strand at 707.147 kb on - strand at 707.212 kb on + strand, within ABZR87_RS19350 at 707.244 kb on + strand, within ABZR87_RS19350 at 707.245 kb on - strand, within ABZR87_RS19350 at 707.331 kb on - strand, within ABZR87_RS19350 at 707.389 kb on + strand, within ABZR87_RS19350 at 707.551 kb on + strand, within ABZR87_RS19350 at 707.551 kb on + strand, within ABZR87_RS19350 at 707.552 kb on - strand, within ABZR87_RS19350 at 707.552 kb on - strand, within ABZR87_RS19350 at 707.578 kb on - strand, within ABZR87_RS19350 at 707.578 kb on - strand, within ABZR87_RS19350 at 707.651 kb on - strand, within ABZR87_RS19350 at 707.728 kb on - strand, within ABZR87_RS19350 at 707.997 kb on + strand at 707.998 kb on - strand at 707.999 kb on + strand at 707.999 kb on + strand at 708.000 kb on - strand at 708.000 kb on - strand at 708.000 kb on - strand at 708.035 kb on + strand at 708.036 kb on - strand at 708.137 kb on + strand at 708.596 kb on + strand, within ABZR87_RS19355 at 708.597 kb on - strand, within ABZR87_RS19355 at 708.597 kb on - strand, within ABZR87_RS19355 at 708.597 kb on - strand, within ABZR87_RS19355 at 708.597 kb on - strand, within ABZR87_RS19355 at 708.597 kb on - strand, within ABZR87_RS19355 at 708.678 kb on + strand, within ABZR87_RS19355 at 708.808 kb on - strand, within ABZR87_RS19355 at 708.836 kb on + strand, within ABZR87_RS19355 at 708.836 kb on + strand, within ABZR87_RS19355 at 708.837 kb on - strand, within ABZR87_RS19355 at 708.837 kb on - strand, within ABZR87_RS19355 at 708.837 kb on - strand, within ABZR87_RS19355 at 708.909 kb on - strand, within ABZR87_RS19355 at 708.935 kb on + strand, within ABZR87_RS19355 at 708.936 kb on - strand, within ABZR87_RS19355 at 708.936 kb on - strand, within ABZR87_RS19355 at 708.936 kb on - strand, within ABZR87_RS19355 at 708.936 kb on - strand, within ABZR87_RS19355 at 708.936 kb on - strand, within ABZR87_RS19355 at 709.035 kb on - strand, within ABZR87_RS19355 at 709.035 kb on - strand, within ABZR87_RS19355 at 709.181 kb on + strand, within ABZR87_RS19355 at 709.181 kb on + strand, within ABZR87_RS19355 at 709.181 kb on + strand, within ABZR87_RS19355 at 709.349 kb on - strand at 709.352 kb on + strand at 709.374 kb on - strand at 709.433 kb on + strand at 709.434 kb on - strand at 709.434 kb on - strand at 709.886 kb on + strand at 709.887 kb on - strand at 709.903 kb on - strand at 710.076 kb on + strand, within ABZR87_RS19360 at 710.076 kb on + strand, within ABZR87_RS19360 at 710.076 kb on + strand, within ABZR87_RS19360 at 710.077 kb on - strand, within ABZR87_RS19360 at 710.077 kb on - strand, within ABZR87_RS19360 at 710.077 kb on - strand, within ABZR87_RS19360 at 710.185 kb on + strand, within ABZR87_RS19360
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 707,135 - +0.0 707,135 - -0.7 707,147 - -0.0 707,212 + ABZR87_RS19350 0.16 -0.3 707,244 + ABZR87_RS19350 0.20 -0.8 707,245 - ABZR87_RS19350 0.20 -0.0 707,331 - ABZR87_RS19350 0.31 -0.5 707,389 + ABZR87_RS19350 0.38 -3.9 707,551 + ABZR87_RS19350 0.57 -1.0 707,551 + ABZR87_RS19350 0.57 -0.4 707,552 - ABZR87_RS19350 0.57 -0.1 707,552 - ABZR87_RS19350 0.57 -1.1 707,578 - ABZR87_RS19350 0.61 -0.4 707,578 - ABZR87_RS19350 0.61 -0.2 707,651 - ABZR87_RS19350 0.69 -0.4 707,728 - ABZR87_RS19350 0.79 -1.0 707,997 + -0.4 707,998 - +0.3 707,999 + -1.3 707,999 + +0.3 708,000 - -0.5 708,000 - +0.1 708,000 - -0.4 708,035 + -0.2 708,036 - -0.2 708,137 + +0.3 708,596 + ABZR87_RS19355 0.42 -0.9 708,597 - ABZR87_RS19355 0.42 +1.5 708,597 - ABZR87_RS19355 0.42 -1.4 708,597 - ABZR87_RS19355 0.42 +0.7 708,597 - ABZR87_RS19355 0.42 +0.5 708,597 - ABZR87_RS19355 0.42 +0.7 708,678 + ABZR87_RS19355 0.48 -0.5 708,808 - ABZR87_RS19355 0.58 +0.5 708,836 + ABZR87_RS19355 0.60 -0.4 708,836 + ABZR87_RS19355 0.60 +1.1 708,837 - ABZR87_RS19355 0.60 +0.8 708,837 - ABZR87_RS19355 0.60 +0.8 708,837 - ABZR87_RS19355 0.60 -0.0 708,909 - ABZR87_RS19355 0.66 +0.1 708,935 + ABZR87_RS19355 0.68 +0.5 708,936 - ABZR87_RS19355 0.68 -0.0 708,936 - ABZR87_RS19355 0.68 +0.6 708,936 - ABZR87_RS19355 0.68 -1.0 708,936 - ABZR87_RS19355 0.68 -0.2 708,936 - ABZR87_RS19355 0.68 +1.0 709,035 - ABZR87_RS19355 0.75 +0.5 709,035 - ABZR87_RS19355 0.75 +0.5 709,181 + ABZR87_RS19355 0.87 +0.8 709,181 + ABZR87_RS19355 0.87 +0.4 709,181 + ABZR87_RS19355 0.87 +0.6 709,349 - +0.0 709,352 + -0.4 709,374 - -0.4 709,433 + +0.1 709,434 - +1.0 709,434 - -1.5 709,886 + -1.4 709,887 - +0.4 709,903 - +0.4 710,076 + ABZR87_RS19360 0.14 -0.1 710,076 + ABZR87_RS19360 0.14 -0.0 710,076 + ABZR87_RS19360 0.14 -0.0 710,077 - ABZR87_RS19360 0.14 +0.6 710,077 - ABZR87_RS19360 0.14 -1.3 710,077 - ABZR87_RS19360 0.14 +0.5 710,185 + ABZR87_RS19360 0.24 +0.9
Or see this region's nucleotide sequence