Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS19100

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS19095 and ABZR87_RS19100 are separated by 81 nucleotidesABZR87_RS19100 and ABZR87_RS19105 are separated by 41 nucleotides ABZR87_RS19095: ABZR87_RS19095 - gluconate:H+ symporter, at 644,907 to 646,259 _RS19095 ABZR87_RS19100: ABZR87_RS19100 - RidA family protein, at 646,341 to 646,727 _RS19100 ABZR87_RS19105: ABZR87_RS19105 - amidohydrolase family protein, at 646,769 to 648,265 _RS19105 Position (kb) 646 647Strain fitness (log2 ratio) -2 -1 0 1 2at 645.406 kb on + strand, within ABZR87_RS19095at 645.406 kb on + strand, within ABZR87_RS19095at 645.406 kb on + strand, within ABZR87_RS19095at 645.406 kb on + strand, within ABZR87_RS19095at 645.407 kb on - strand, within ABZR87_RS19095at 645.407 kb on - strand, within ABZR87_RS19095at 645.407 kb on - strand, within ABZR87_RS19095at 645.640 kb on + strand, within ABZR87_RS19095at 645.640 kb on + strand, within ABZR87_RS19095at 645.640 kb on + strand, within ABZR87_RS19095at 645.641 kb on - strand, within ABZR87_RS19095at 645.709 kb on + strand, within ABZR87_RS19095at 645.709 kb on + strand, within ABZR87_RS19095at 645.709 kb on + strand, within ABZR87_RS19095at 645.709 kb on + strand, within ABZR87_RS19095at 645.709 kb on + strand, within ABZR87_RS19095at 645.709 kb on + strand, within ABZR87_RS19095at 645.709 kb on + strand, within ABZR87_RS19095at 645.709 kb on + strand, within ABZR87_RS19095at 645.709 kb on + strand, within ABZR87_RS19095at 645.710 kb on - strand, within ABZR87_RS19095at 645.710 kb on - strand, within ABZR87_RS19095at 645.710 kb on - strand, within ABZR87_RS19095at 645.710 kb on - strand, within ABZR87_RS19095at 645.710 kb on - strand, within ABZR87_RS19095at 645.710 kb on - strand, within ABZR87_RS19095at 645.739 kb on + strand, within ABZR87_RS19095at 646.195 kb on + strandat 646.233 kb on + strandat 646.234 kb on - strandat 646.279 kb on + strandat 646.279 kb on + strandat 646.280 kb on - strandat 646.280 kb on - strandat 646.280 kb on - strandat 646.280 kb on - strandat 646.280 kb on - strandat 646.354 kb on + strandat 646.439 kb on - strand, within ABZR87_RS19100at 646.439 kb on - strand, within ABZR87_RS19100at 646.731 kb on + strandat 646.731 kb on + strandat 646.873 kb on - strandat 646.989 kb on + strand, within ABZR87_RS19105at 646.989 kb on + strand, within ABZR87_RS19105at 646.990 kb on - strand, within ABZR87_RS19105at 647.097 kb on + strand, within ABZR87_RS19105at 647.097 kb on + strand, within ABZR87_RS19105at 647.097 kb on + strand, within ABZR87_RS19105at 647.097 kb on + strand, within ABZR87_RS19105at 647.098 kb on - strand, within ABZR87_RS19105at 647.098 kb on - strand, within ABZR87_RS19105at 647.098 kb on - strand, within ABZR87_RS19105at 647.101 kb on - strand, within ABZR87_RS19105at 647.101 kb on - strand, within ABZR87_RS19105at 647.232 kb on + strand, within ABZR87_RS19105at 647.409 kb on + strand, within ABZR87_RS19105at 647.409 kb on + strand, within ABZR87_RS19105at 647.409 kb on + strand, within ABZR87_RS19105at 647.409 kb on + strand, within ABZR87_RS19105at 647.410 kb on - strand, within ABZR87_RS19105at 647.410 kb on - strand, within ABZR87_RS19105at 647.614 kb on - strand, within ABZR87_RS19105at 647.689 kb on - strand, within ABZR87_RS19105

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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645,406 + ABZR87_RS19095 0.37 -0.3
645,406 + ABZR87_RS19095 0.37 +0.4
645,406 + ABZR87_RS19095 0.37 -0.1
645,406 + ABZR87_RS19095 0.37 +0.2
645,407 - ABZR87_RS19095 0.37 +1.1
645,407 - ABZR87_RS19095 0.37 +0.1
645,407 - ABZR87_RS19095 0.37 +0.5
645,640 + ABZR87_RS19095 0.54 -0.7
645,640 + ABZR87_RS19095 0.54 +0.8
645,640 + ABZR87_RS19095 0.54 -0.3
645,641 - ABZR87_RS19095 0.54 +0.6
645,709 + ABZR87_RS19095 0.59 -0.5
645,709 + ABZR87_RS19095 0.59 +0.4
645,709 + ABZR87_RS19095 0.59 -0.5
645,709 + ABZR87_RS19095 0.59 +1.1
645,709 + ABZR87_RS19095 0.59 +0.8
645,709 + ABZR87_RS19095 0.59 +0.1
645,709 + ABZR87_RS19095 0.59 -1.8
645,709 + ABZR87_RS19095 0.59 +0.2
645,709 + ABZR87_RS19095 0.59 -0.6
645,710 - ABZR87_RS19095 0.59 -0.0
645,710 - ABZR87_RS19095 0.59 +0.5
645,710 - ABZR87_RS19095 0.59 -0.5
645,710 - ABZR87_RS19095 0.59 -0.1
645,710 - ABZR87_RS19095 0.59 -1.1
645,710 - ABZR87_RS19095 0.59 -0.7
645,739 + ABZR87_RS19095 0.61 -0.8
646,195 + -0.7
646,233 + -0.8
646,234 - -0.6
646,279 + -0.8
646,279 + -0.0
646,280 - -0.6
646,280 - -1.0
646,280 - -1.4
646,280 - -0.7
646,280 - +0.6
646,354 + +0.0
646,439 - ABZR87_RS19100 0.25 -0.7
646,439 - ABZR87_RS19100 0.25 -0.6
646,731 + +0.0
646,731 + -0.4
646,873 - -2.7
646,989 + ABZR87_RS19105 0.15 -0.1
646,989 + ABZR87_RS19105 0.15 -1.8
646,990 - ABZR87_RS19105 0.15 +0.9
647,097 + ABZR87_RS19105 0.22 +0.5
647,097 + ABZR87_RS19105 0.22 +0.6
647,097 + ABZR87_RS19105 0.22 +0.0
647,097 + ABZR87_RS19105 0.22 -1.3
647,098 - ABZR87_RS19105 0.22 -1.7
647,098 - ABZR87_RS19105 0.22 +0.2
647,098 - ABZR87_RS19105 0.22 +0.8
647,101 - ABZR87_RS19105 0.22 +0.4
647,101 - ABZR87_RS19105 0.22 -0.2
647,232 + ABZR87_RS19105 0.31 -0.1
647,409 + ABZR87_RS19105 0.43 -1.8
647,409 + ABZR87_RS19105 0.43 +0.2
647,409 + ABZR87_RS19105 0.43 +2.6
647,409 + ABZR87_RS19105 0.43 +0.9
647,410 - ABZR87_RS19105 0.43 -0.2
647,410 - ABZR87_RS19105 0.43 +1.7
647,614 - ABZR87_RS19105 0.56 -1.2
647,689 - ABZR87_RS19105 0.61 -0.6

Or see this region's nucleotide sequence