Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18995

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS18990 and ABZR87_RS18995 are separated by 116 nucleotidesABZR87_RS18995 and ABZR87_RS19000 are separated by 14 nucleotides ABZR87_RS18990: ABZR87_RS18990 - flagellar brake protein, at 618,549 to 619,454 _RS18990 ABZR87_RS18995: ABZR87_RS18995 - GtrA family protein, at 619,571 to 620,083 _RS18995 ABZR87_RS19000: ABZR87_RS19000 - hypothetical protein, at 620,098 to 620,580 _RS19000 Position (kb) 619 620 621Strain fitness (log2 ratio) -2 -1 0 1 2at 618.586 kb on + strandat 618.586 kb on + strandat 618.586 kb on + strandat 618.586 kb on + strandat 618.587 kb on - strandat 618.587 kb on - strandat 618.587 kb on - strandat 618.587 kb on - strandat 618.587 kb on - strandat 618.587 kb on - strandat 618.587 kb on - strandat 618.587 kb on - strandat 618.587 kb on - strandat 618.646 kb on + strand, within ABZR87_RS18990at 618.646 kb on + strand, within ABZR87_RS18990at 618.646 kb on + strand, within ABZR87_RS18990at 618.646 kb on + strand, within ABZR87_RS18990at 618.647 kb on - strand, within ABZR87_RS18990at 618.647 kb on - strand, within ABZR87_RS18990at 618.653 kb on - strand, within ABZR87_RS18990at 618.653 kb on - strand, within ABZR87_RS18990at 618.718 kb on + strand, within ABZR87_RS18990at 618.718 kb on + strand, within ABZR87_RS18990at 618.718 kb on + strand, within ABZR87_RS18990at 618.718 kb on + strand, within ABZR87_RS18990at 618.718 kb on + strand, within ABZR87_RS18990at 618.719 kb on - strand, within ABZR87_RS18990at 618.719 kb on - strand, within ABZR87_RS18990at 618.719 kb on - strand, within ABZR87_RS18990at 618.719 kb on - strand, within ABZR87_RS18990at 618.940 kb on + strand, within ABZR87_RS18990at 618.940 kb on + strand, within ABZR87_RS18990at 618.940 kb on + strand, within ABZR87_RS18990at 618.941 kb on - strand, within ABZR87_RS18990at 618.941 kb on - strand, within ABZR87_RS18990at 618.941 kb on - strand, within ABZR87_RS18990at 618.941 kb on - strand, within ABZR87_RS18990at 618.960 kb on + strand, within ABZR87_RS18990at 618.961 kb on - strand, within ABZR87_RS18990at 619.099 kb on + strand, within ABZR87_RS18990at 619.099 kb on + strand, within ABZR87_RS18990at 619.202 kb on + strand, within ABZR87_RS18990at 619.202 kb on + strand, within ABZR87_RS18990at 619.202 kb on + strand, within ABZR87_RS18990at 619.203 kb on - strand, within ABZR87_RS18990at 619.203 kb on - strand, within ABZR87_RS18990at 619.203 kb on - strand, within ABZR87_RS18990at 619.203 kb on - strand, within ABZR87_RS18990at 619.203 kb on - strand, within ABZR87_RS18990at 619.259 kb on + strand, within ABZR87_RS18990at 619.260 kb on - strand, within ABZR87_RS18990at 619.495 kb on + strandat 619.495 kb on + strandat 619.495 kb on + strandat 619.520 kb on + strandat 619.530 kb on + strandat 619.530 kb on + strandat 619.531 kb on - strandat 619.667 kb on + strand, within ABZR87_RS18995at 619.667 kb on + strand, within ABZR87_RS18995at 619.667 kb on + strand, within ABZR87_RS18995at 619.667 kb on + strand, within ABZR87_RS18995at 619.668 kb on - strand, within ABZR87_RS18995at 619.668 kb on - strand, within ABZR87_RS18995at 619.668 kb on - strand, within ABZR87_RS18995at 619.669 kb on + strand, within ABZR87_RS18995at 619.669 kb on + strand, within ABZR87_RS18995at 619.669 kb on + strand, within ABZR87_RS18995at 619.669 kb on + strand, within ABZR87_RS18995at 619.669 kb on + strand, within ABZR87_RS18995at 619.670 kb on - strand, within ABZR87_RS18995at 619.670 kb on - strand, within ABZR87_RS18995at 619.703 kb on + strand, within ABZR87_RS18995at 619.703 kb on + strand, within ABZR87_RS18995at 619.703 kb on + strand, within ABZR87_RS18995at 619.703 kb on + strand, within ABZR87_RS18995at 619.703 kb on + strand, within ABZR87_RS18995at 619.703 kb on + strand, within ABZR87_RS18995at 619.703 kb on + strand, within ABZR87_RS18995at 619.703 kb on + strand, within ABZR87_RS18995at 619.703 kb on + strand, within ABZR87_RS18995at 619.703 kb on + strand, within ABZR87_RS18995at 619.703 kb on + strand, within ABZR87_RS18995at 619.704 kb on - strand, within ABZR87_RS18995at 619.704 kb on - strand, within ABZR87_RS18995at 619.704 kb on - strand, within ABZR87_RS18995at 619.790 kb on + strand, within ABZR87_RS18995at 619.790 kb on + strand, within ABZR87_RS18995at 619.790 kb on + strand, within ABZR87_RS18995at 619.790 kb on + strand, within ABZR87_RS18995at 619.791 kb on - strand, within ABZR87_RS18995at 619.791 kb on - strand, within ABZR87_RS18995at 619.791 kb on - strand, within ABZR87_RS18995at 619.791 kb on - strand, within ABZR87_RS18995at 619.791 kb on - strand, within ABZR87_RS18995at 619.791 kb on - strand, within ABZR87_RS18995at 619.791 kb on - strand, within ABZR87_RS18995at 619.834 kb on + strand, within ABZR87_RS18995at 619.925 kb on + strand, within ABZR87_RS18995at 619.925 kb on + strand, within ABZR87_RS18995at 619.925 kb on + strand, within ABZR87_RS18995at 619.925 kb on + strand, within ABZR87_RS18995at 619.926 kb on - strand, within ABZR87_RS18995at 619.926 kb on - strand, within ABZR87_RS18995at 619.926 kb on - strand, within ABZR87_RS18995at 619.926 kb on - strand, within ABZR87_RS18995at 619.926 kb on - strand, within ABZR87_RS18995at 619.928 kb on + strand, within ABZR87_RS18995at 619.928 kb on + strand, within ABZR87_RS18995at 619.929 kb on - strand, within ABZR87_RS18995at 619.929 kb on - strand, within ABZR87_RS18995at 620.099 kb on + strandat 620.100 kb on - strandat 620.100 kb on - strandat 620.218 kb on + strand, within ABZR87_RS19000at 620.218 kb on + strand, within ABZR87_RS19000at 620.218 kb on + strand, within ABZR87_RS19000at 620.218 kb on + strand, within ABZR87_RS19000at 620.219 kb on - strand, within ABZR87_RS19000at 620.219 kb on - strand, within ABZR87_RS19000at 620.219 kb on - strand, within ABZR87_RS19000at 620.219 kb on - strand, within ABZR87_RS19000at 620.289 kb on + strand, within ABZR87_RS19000at 620.289 kb on + strand, within ABZR87_RS19000at 620.402 kb on + strand, within ABZR87_RS19000at 620.402 kb on + strand, within ABZR87_RS19000at 620.403 kb on - strand, within ABZR87_RS19000at 620.505 kb on + strand, within ABZR87_RS19000at 620.580 kb on + strandat 620.580 kb on + strandat 620.580 kb on + strandat 620.580 kb on + strandat 620.580 kb on + strandat 620.580 kb on + strandat 620.580 kb on + strandat 620.581 kb on - strandat 620.581 kb on - strandat 620.581 kb on - strandat 620.581 kb on - strandat 620.647 kb on - strandat 620.647 kb on - strandat 620.648 kb on + strandat 620.658 kb on + strandat 620.658 kb on + strandat 620.658 kb on + strandat 620.658 kb on + strandat 620.658 kb on + strandat 620.658 kb on + strandat 620.658 kb on + strandat 620.658 kb on + strandat 620.659 kb on - strandat 620.659 kb on - strandat 620.659 kb on - strandat 620.659 kb on - strandat 620.659 kb on - strandat 620.659 kb on - strandat 620.661 kb on + strandat 620.661 kb on + strandat 620.661 kb on + strandat 620.662 kb on - strandat 620.812 kb on + strandat 620.813 kb on - strandat 620.838 kb on + strandat 621.017 kb on + strandat 621.017 kb on + strandat 621.017 kb on + strandat 621.017 kb on + strandat 621.017 kb on + strandat 621.017 kb on + strandat 621.017 kb on + strandat 621.018 kb on - strandat 621.018 kb on - strandat 621.018 kb on - strandat 621.018 kb on - strandat 621.018 kb on - strandat 621.019 kb on + strandat 621.020 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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618,586 + +0.2
618,586 + -0.2
618,586 + -0.0
618,586 + +0.0
618,587 - -0.4
618,587 - +0.1
618,587 - -0.2
618,587 - +0.5
618,587 - -0.4
618,587 - -0.5
618,587 - -0.3
618,587 - -0.7
618,587 - +0.5
618,646 + ABZR87_RS18990 0.11 -0.3
618,646 + ABZR87_RS18990 0.11 -0.3
618,646 + ABZR87_RS18990 0.11 -0.1
618,646 + ABZR87_RS18990 0.11 -0.3
618,647 - ABZR87_RS18990 0.11 +0.0
618,647 - ABZR87_RS18990 0.11 +0.2
618,653 - ABZR87_RS18990 0.11 +1.3
618,653 - ABZR87_RS18990 0.11 +0.0
618,718 + ABZR87_RS18990 0.19 -0.4
618,718 + ABZR87_RS18990 0.19 +0.9
618,718 + ABZR87_RS18990 0.19 +0.4
618,718 + ABZR87_RS18990 0.19 -0.2
618,718 + ABZR87_RS18990 0.19 +0.1
618,719 - ABZR87_RS18990 0.19 -0.2
618,719 - ABZR87_RS18990 0.19 -1.2
618,719 - ABZR87_RS18990 0.19 -1.0
618,719 - ABZR87_RS18990 0.19 +0.1
618,940 + ABZR87_RS18990 0.43 -0.4
618,940 + ABZR87_RS18990 0.43 +0.3
618,940 + ABZR87_RS18990 0.43 -0.6
618,941 - ABZR87_RS18990 0.43 -0.5
618,941 - ABZR87_RS18990 0.43 -0.5
618,941 - ABZR87_RS18990 0.43 +0.5
618,941 - ABZR87_RS18990 0.43 -0.2
618,960 + ABZR87_RS18990 0.45 +0.3
618,961 - ABZR87_RS18990 0.45 -0.7
619,099 + ABZR87_RS18990 0.61 +0.8
619,099 + ABZR87_RS18990 0.61 -0.7
619,202 + ABZR87_RS18990 0.72 -0.1
619,202 + ABZR87_RS18990 0.72 +0.1
619,202 + ABZR87_RS18990 0.72 +0.9
619,203 - ABZR87_RS18990 0.72 -0.1
619,203 - ABZR87_RS18990 0.72 +0.6
619,203 - ABZR87_RS18990 0.72 +1.4
619,203 - ABZR87_RS18990 0.72 +0.2
619,203 - ABZR87_RS18990 0.72 +0.1
619,259 + ABZR87_RS18990 0.78 +0.1
619,260 - ABZR87_RS18990 0.78 -0.3
619,495 + +1.1
619,495 + +0.4
619,495 + +0.0
619,520 + -1.0
619,530 + -2.7
619,530 + -2.5
619,531 - +0.3
619,667 + ABZR87_RS18995 0.19 -0.3
619,667 + ABZR87_RS18995 0.19 +0.2
619,667 + ABZR87_RS18995 0.19 +1.9
619,667 + ABZR87_RS18995 0.19 -1.9
619,668 - ABZR87_RS18995 0.19 -2.4
619,668 - ABZR87_RS18995 0.19 -0.8
619,668 - ABZR87_RS18995 0.19 -0.4
619,669 + ABZR87_RS18995 0.19 -0.3
619,669 + ABZR87_RS18995 0.19 -0.2
619,669 + ABZR87_RS18995 0.19 -1.3
619,669 + ABZR87_RS18995 0.19 -0.3
619,669 + ABZR87_RS18995 0.19 -0.5
619,670 - ABZR87_RS18995 0.19 +0.9
619,670 - ABZR87_RS18995 0.19 +0.9
619,703 + ABZR87_RS18995 0.26 +0.3
619,703 + ABZR87_RS18995 0.26 -1.1
619,703 + ABZR87_RS18995 0.26 -0.8
619,703 + ABZR87_RS18995 0.26 -0.8
619,703 + ABZR87_RS18995 0.26 -1.2
619,703 + ABZR87_RS18995 0.26 -0.4
619,703 + ABZR87_RS18995 0.26 -0.3
619,703 + ABZR87_RS18995 0.26 +0.2
619,703 + ABZR87_RS18995 0.26 +0.3
619,703 + ABZR87_RS18995 0.26 +0.6
619,703 + ABZR87_RS18995 0.26 -0.4
619,704 - ABZR87_RS18995 0.26 +0.7
619,704 - ABZR87_RS18995 0.26 +0.4
619,704 - ABZR87_RS18995 0.26 +0.9
619,790 + ABZR87_RS18995 0.43 -1.2
619,790 + ABZR87_RS18995 0.43 -0.2
619,790 + ABZR87_RS18995 0.43 +0.4
619,790 + ABZR87_RS18995 0.43 -0.9
619,791 - ABZR87_RS18995 0.43 -0.0
619,791 - ABZR87_RS18995 0.43 +0.0
619,791 - ABZR87_RS18995 0.43 -0.4
619,791 - ABZR87_RS18995 0.43 +0.9
619,791 - ABZR87_RS18995 0.43 +0.5
619,791 - ABZR87_RS18995 0.43 -0.1
619,791 - ABZR87_RS18995 0.43 +0.6
619,834 + ABZR87_RS18995 0.51 +0.6
619,925 + ABZR87_RS18995 0.69 +0.0
619,925 + ABZR87_RS18995 0.69 +0.5
619,925 + ABZR87_RS18995 0.69 -0.5
619,925 + ABZR87_RS18995 0.69 -0.1
619,926 - ABZR87_RS18995 0.69 -0.2
619,926 - ABZR87_RS18995 0.69 -0.4
619,926 - ABZR87_RS18995 0.69 -0.2
619,926 - ABZR87_RS18995 0.69 +0.6
619,926 - ABZR87_RS18995 0.69 +0.2
619,928 + ABZR87_RS18995 0.70 -1.3
619,928 + ABZR87_RS18995 0.70 +0.3
619,929 - ABZR87_RS18995 0.70 -0.4
619,929 - ABZR87_RS18995 0.70 +0.6
620,099 + -0.8
620,100 - +0.5
620,100 - +1.2
620,218 + ABZR87_RS19000 0.25 +0.0
620,218 + ABZR87_RS19000 0.25 +0.4
620,218 + ABZR87_RS19000 0.25 -0.2
620,218 + ABZR87_RS19000 0.25 +0.0
620,219 - ABZR87_RS19000 0.25 +1.1
620,219 - ABZR87_RS19000 0.25 +0.7
620,219 - ABZR87_RS19000 0.25 -0.6
620,219 - ABZR87_RS19000 0.25 -1.1
620,289 + ABZR87_RS19000 0.40 +0.2
620,289 + ABZR87_RS19000 0.40 +0.7
620,402 + ABZR87_RS19000 0.63 +0.7
620,402 + ABZR87_RS19000 0.63 +0.2
620,403 - ABZR87_RS19000 0.63 +0.1
620,505 + ABZR87_RS19000 0.84 -1.3
620,580 + +0.5
620,580 + +0.0
620,580 + +0.6
620,580 + +0.6
620,580 + -0.9
620,580 + -0.4
620,580 + +0.5
620,581 - -0.2
620,581 - +1.0
620,581 - -0.9
620,581 - -0.1
620,647 - -0.4
620,647 - +0.2
620,648 + -0.9
620,658 + +0.6
620,658 + -0.1
620,658 + -0.6
620,658 + -0.2
620,658 + +1.2
620,658 + +0.2
620,658 + +0.9
620,658 + +0.5
620,659 - +0.4
620,659 - +0.0
620,659 - +1.9
620,659 - +0.9
620,659 - -0.5
620,659 - +2.5
620,661 + -0.4
620,661 + +0.1
620,661 + +0.1
620,662 - -0.3
620,812 + +0.6
620,813 - +0.3
620,838 + -0.2
621,017 + +1.5
621,017 + -0.1
621,017 + +0.3
621,017 + +1.9
621,017 + +0.8
621,017 + +0.3
621,017 + +0.4
621,018 - -0.2
621,018 - -0.2
621,018 - +0.4
621,018 - +1.2
621,018 - +1.0
621,019 + -0.3
621,020 - +0.9

Or see this region's nucleotide sequence