Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18740

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS18735 and ABZR87_RS18740 are separated by 131 nucleotidesABZR87_RS18740 and ABZR87_RS18745 are separated by 143 nucleotidesABZR87_RS18745 and ABZR87_RS18750 are separated by 161 nucleotides ABZR87_RS18735: ABZR87_RS18735 - sulfite exporter TauE/SafE family protein, at 556,096 to 556,854 _RS18735 ABZR87_RS18740: ABZR87_RS18740 - LysR substrate-binding domain-containing protein, at 556,986 to 557,870 _RS18740 ABZR87_RS18745: ABZR87_RS18745 - hypothetical protein, at 558,014 to 558,535 _RS18745 ABZR87_RS18750: ABZR87_RS18750 - AMP-binding protein, at 558,697 to 560,394 _RS18750 Position (kb) 556 557 558Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 556.013 kb on + strandat 556.013 kb on + strandat 556.013 kb on + strandat 556.014 kb on - strandat 556.014 kb on - strandat 556.169 kb on + strandat 556.212 kb on - strand, within ABZR87_RS18735at 556.410 kb on - strand, within ABZR87_RS18735at 556.418 kb on + strand, within ABZR87_RS18735at 556.418 kb on + strand, within ABZR87_RS18735at 556.418 kb on + strand, within ABZR87_RS18735at 556.418 kb on + strand, within ABZR87_RS18735at 556.418 kb on + strand, within ABZR87_RS18735at 556.418 kb on + strand, within ABZR87_RS18735at 556.419 kb on - strand, within ABZR87_RS18735at 556.419 kb on - strand, within ABZR87_RS18735at 556.419 kb on - strand, within ABZR87_RS18735at 556.419 kb on - strand, within ABZR87_RS18735at 556.419 kb on - strand, within ABZR87_RS18735at 556.419 kb on - strand, within ABZR87_RS18735at 556.419 kb on - strand, within ABZR87_RS18735at 556.419 kb on - strand, within ABZR87_RS18735at 556.713 kb on + strand, within ABZR87_RS18735at 556.930 kb on + strandat 556.930 kb on + strandat 556.930 kb on + strandat 556.930 kb on + strandat 556.930 kb on + strandat 556.931 kb on - strandat 556.931 kb on - strandat 556.931 kb on - strandat 556.931 kb on - strandat 557.244 kb on + strand, within ABZR87_RS18740at 557.266 kb on - strand, within ABZR87_RS18740at 557.357 kb on - strand, within ABZR87_RS18740at 557.598 kb on + strand, within ABZR87_RS18740at 557.598 kb on + strand, within ABZR87_RS18740at 557.598 kb on + strand, within ABZR87_RS18740at 557.598 kb on + strand, within ABZR87_RS18740at 557.598 kb on + strand, within ABZR87_RS18740at 557.598 kb on + strand, within ABZR87_RS18740at 557.599 kb on - strand, within ABZR87_RS18740at 557.599 kb on - strand, within ABZR87_RS18740at 557.599 kb on - strand, within ABZR87_RS18740at 557.599 kb on - strand, within ABZR87_RS18740at 557.599 kb on - strand, within ABZR87_RS18740at 557.640 kb on + strand, within ABZR87_RS18740at 557.641 kb on - strand, within ABZR87_RS18740at 557.939 kb on - strandat 557.939 kb on - strandat 558.086 kb on + strand, within ABZR87_RS18745at 558.218 kb on + strand, within ABZR87_RS18745at 558.218 kb on + strand, within ABZR87_RS18745at 558.218 kb on + strand, within ABZR87_RS18745at 558.218 kb on + strand, within ABZR87_RS18745at 558.218 kb on + strand, within ABZR87_RS18745at 558.218 kb on + strand, within ABZR87_RS18745at 558.219 kb on - strand, within ABZR87_RS18745at 558.219 kb on - strand, within ABZR87_RS18745at 558.219 kb on - strand, within ABZR87_RS18745at 558.219 kb on - strand, within ABZR87_RS18745at 558.219 kb on - strand, within ABZR87_RS18745at 558.219 kb on - strand, within ABZR87_RS18745at 558.220 kb on + strand, within ABZR87_RS18745at 558.220 kb on + strand, within ABZR87_RS18745at 558.220 kb on + strand, within ABZR87_RS18745at 558.220 kb on + strand, within ABZR87_RS18745at 558.221 kb on - strand, within ABZR87_RS18745at 558.221 kb on - strand, within ABZR87_RS18745at 558.221 kb on - strand, within ABZR87_RS18745at 558.221 kb on - strand, within ABZR87_RS18745at 558.221 kb on - strand, within ABZR87_RS18745at 558.221 kb on - strand, within ABZR87_RS18745at 558.221 kb on - strand, within ABZR87_RS18745at 558.221 kb on - strand, within ABZR87_RS18745at 558.233 kb on + strand, within ABZR87_RS18745at 558.367 kb on - strand, within ABZR87_RS18745at 558.387 kb on + strand, within ABZR87_RS18745at 558.388 kb on - strand, within ABZR87_RS18745at 558.388 kb on - strand, within ABZR87_RS18745at 558.388 kb on - strand, within ABZR87_RS18745at 558.388 kb on - strand, within ABZR87_RS18745at 558.584 kb on + strandat 558.584 kb on + strandat 558.585 kb on - strandat 558.585 kb on - strandat 558.585 kb on - strandat 558.586 kb on + strandat 558.587 kb on - strandat 558.587 kb on - strandat 558.587 kb on - strandat 558.587 kb on - strandat 558.587 kb on - strandat 558.587 kb on - strandat 558.587 kb on - strandat 558.587 kb on - strandat 558.633 kb on + strandat 558.757 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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556,013 + -2.2
556,013 + -1.5
556,013 + +0.7
556,014 - +0.4
556,014 - +1.0
556,169 + +1.4
556,212 - ABZR87_RS18735 0.15 -2.4
556,410 - ABZR87_RS18735 0.41 -1.8
556,418 + ABZR87_RS18735 0.42 +0.4
556,418 + ABZR87_RS18735 0.42 +1.5
556,418 + ABZR87_RS18735 0.42 -0.1
556,418 + ABZR87_RS18735 0.42 -0.1
556,418 + ABZR87_RS18735 0.42 -0.0
556,418 + ABZR87_RS18735 0.42 +0.8
556,419 - ABZR87_RS18735 0.43 -1.8
556,419 - ABZR87_RS18735 0.43 -3.4
556,419 - ABZR87_RS18735 0.43 -2.4
556,419 - ABZR87_RS18735 0.43 -2.2
556,419 - ABZR87_RS18735 0.43 -4.1
556,419 - ABZR87_RS18735 0.43 -4.9
556,419 - ABZR87_RS18735 0.43 -2.5
556,419 - ABZR87_RS18735 0.43 -2.0
556,713 + ABZR87_RS18735 0.81 +0.2
556,930 + -0.1
556,930 + -0.7
556,930 + -0.0
556,930 + +0.3
556,930 + +0.1
556,931 - -1.6
556,931 - -3.5
556,931 - -2.2
556,931 - -2.9
557,244 + ABZR87_RS18740 0.29 -0.8
557,266 - ABZR87_RS18740 0.32 -1.2
557,357 - ABZR87_RS18740 0.42 -1.9
557,598 + ABZR87_RS18740 0.69 -0.6
557,598 + ABZR87_RS18740 0.69 -1.6
557,598 + ABZR87_RS18740 0.69 -1.0
557,598 + ABZR87_RS18740 0.69 +0.9
557,598 + ABZR87_RS18740 0.69 -0.3
557,598 + ABZR87_RS18740 0.69 +1.0
557,599 - ABZR87_RS18740 0.69 -0.6
557,599 - ABZR87_RS18740 0.69 -1.1
557,599 - ABZR87_RS18740 0.69 -1.3
557,599 - ABZR87_RS18740 0.69 -2.8
557,599 - ABZR87_RS18740 0.69 -0.6
557,640 + ABZR87_RS18740 0.74 +0.1
557,641 - ABZR87_RS18740 0.74 +1.0
557,939 - -2.9
557,939 - -0.5
558,086 + ABZR87_RS18745 0.14 -0.8
558,218 + ABZR87_RS18745 0.39 -2.1
558,218 + ABZR87_RS18745 0.39 +1.0
558,218 + ABZR87_RS18745 0.39 +1.0
558,218 + ABZR87_RS18745 0.39 +0.1
558,218 + ABZR87_RS18745 0.39 -0.3
558,218 + ABZR87_RS18745 0.39 -0.2
558,219 - ABZR87_RS18745 0.39 -2.7
558,219 - ABZR87_RS18745 0.39 -3.6
558,219 - ABZR87_RS18745 0.39 -1.0
558,219 - ABZR87_RS18745 0.39 -0.6
558,219 - ABZR87_RS18745 0.39 -0.4
558,219 - ABZR87_RS18745 0.39 -2.1
558,220 + ABZR87_RS18745 0.39 -0.2
558,220 + ABZR87_RS18745 0.39 -0.8
558,220 + ABZR87_RS18745 0.39 -0.4
558,220 + ABZR87_RS18745 0.39 +0.1
558,221 - ABZR87_RS18745 0.40 -1.4
558,221 - ABZR87_RS18745 0.40 -2.0
558,221 - ABZR87_RS18745 0.40 -3.4
558,221 - ABZR87_RS18745 0.40 -1.6
558,221 - ABZR87_RS18745 0.40 -2.1
558,221 - ABZR87_RS18745 0.40 -1.2
558,221 - ABZR87_RS18745 0.40 -3.6
558,221 - ABZR87_RS18745 0.40 -1.0
558,233 + ABZR87_RS18745 0.42 -0.3
558,367 - ABZR87_RS18745 0.68 -0.5
558,387 + ABZR87_RS18745 0.71 -0.0
558,388 - ABZR87_RS18745 0.72 +0.1
558,388 - ABZR87_RS18745 0.72 -0.4
558,388 - ABZR87_RS18745 0.72 -2.2
558,388 - ABZR87_RS18745 0.72 -1.0
558,584 + +0.2
558,584 + -0.0
558,585 - -0.5
558,585 - -0.3
558,585 - -1.7
558,586 + -0.0
558,587 - -0.3
558,587 - -1.8
558,587 - -0.6
558,587 - +0.2
558,587 - +0.2
558,587 - -2.8
558,587 - -0.4
558,587 - +0.1
558,633 + +0.6
558,757 + -1.1

Or see this region's nucleotide sequence