Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS08535

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS08525 and ABZR87_RS08530 are separated by 131 nucleotidesABZR87_RS08530 and ABZR87_RS08535 are separated by 515 nucleotidesABZR87_RS08535 and ABZR87_RS08540 are separated by 641 nucleotides ABZR87_RS08525: ABZR87_RS08525 - prepilin peptidase, at 1,811,083 to 1,811,616 _RS08525 ABZR87_RS08530: ABZR87_RS08530 - Flp family type IVb pilin, at 1,811,748 to 1,811,924 _RS08530 ABZR87_RS08535: ABZR87_RS08535 - Flp family type IVb pilin, at 1,812,440 to 1,812,655 _RS08535 ABZR87_RS08540: ABZR87_RS08540 - TPM domain-containing protein, at 1,813,297 to 1,813,821 _RS08540 Position (kb) 1812 1813Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1811.825 kb on - strand, within ABZR87_RS08530at 1811.825 kb on - strand, within ABZR87_RS08530at 1811.867 kb on - strand, within ABZR87_RS08530at 1811.867 kb on - strand, within ABZR87_RS08530at 1812.346 kb on - strandat 1812.438 kb on + strandat 1812.438 kb on + strandat 1812.438 kb on + strandat 1812.438 kb on + strandat 1812.438 kb on + strandat 1812.438 kb on + strandat 1812.438 kb on + strandat 1812.439 kb on - strandat 1812.439 kb on - strandat 1812.714 kb on + strandat 1812.714 kb on + strandat 1812.714 kb on + strandat 1812.714 kb on + strandat 1812.714 kb on + strandat 1812.714 kb on + strandat 1812.715 kb on - strandat 1812.715 kb on - strandat 1812.715 kb on - strandat 1812.715 kb on - strandat 1812.715 kb on - strandat 1812.715 kb on - strandat 1812.715 kb on - strandat 1812.715 kb on - strandat 1812.715 kb on - strandat 1812.715 kb on - strandat 1812.715 kb on - strandat 1812.715 kb on - strandat 1812.825 kb on + strandat 1812.825 kb on + strandat 1812.825 kb on + strandat 1812.826 kb on - strandat 1812.826 kb on - strandat 1812.862 kb on + strandat 1812.862 kb on + strandat 1812.878 kb on + strandat 1812.878 kb on + strandat 1812.878 kb on + strandat 1812.878 kb on + strandat 1812.879 kb on - strandat 1812.879 kb on - strandat 1812.879 kb on - strandat 1812.879 kb on - strandat 1812.879 kb on - strandat 1812.898 kb on + strandat 1812.898 kb on + strandat 1812.951 kb on - strandat 1813.066 kb on + strandat 1813.098 kb on + strandat 1813.099 kb on - strandat 1813.170 kb on + strandat 1813.170 kb on + strandat 1813.170 kb on + strandat 1813.170 kb on + strandat 1813.171 kb on - strandat 1813.171 kb on - strandat 1813.171 kb on - strandat 1813.181 kb on + strandat 1813.181 kb on + strandat 1813.182 kb on - strandat 1813.298 kb on + strandat 1813.298 kb on + strandat 1813.299 kb on - strandat 1813.488 kb on + strand, within ABZR87_RS08540at 1813.535 kb on + strand, within ABZR87_RS08540at 1813.536 kb on - strand, within ABZR87_RS08540at 1813.536 kb on - strand, within ABZR87_RS08540

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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1,811,825 - ABZR87_RS08530 0.44 +1.6
1,811,825 - ABZR87_RS08530 0.44 -2.1
1,811,867 - ABZR87_RS08530 0.67 +0.1
1,811,867 - ABZR87_RS08530 0.67 +0.4
1,812,346 - +0.5
1,812,438 + +0.5
1,812,438 + +0.7
1,812,438 + -0.4
1,812,438 + -0.3
1,812,438 + +1.7
1,812,438 + -1.2
1,812,438 + -0.2
1,812,439 - +1.1
1,812,439 - +0.0
1,812,714 + +0.2
1,812,714 + +0.3
1,812,714 + +0.6
1,812,714 + +0.2
1,812,714 + +0.1
1,812,714 + -1.1
1,812,715 - +0.4
1,812,715 - +0.7
1,812,715 - -0.0
1,812,715 - +1.1
1,812,715 - +0.5
1,812,715 - -0.1
1,812,715 - -0.1
1,812,715 - +0.3
1,812,715 - +0.2
1,812,715 - -0.4
1,812,715 - +2.0
1,812,715 - +1.3
1,812,825 + +1.1
1,812,825 + -3.3
1,812,825 + -0.3
1,812,826 - +1.2
1,812,826 - -0.2
1,812,862 + -0.4
1,812,862 + +0.4
1,812,878 + +0.2
1,812,878 + -0.3
1,812,878 + -0.4
1,812,878 + +0.8
1,812,879 - +0.4
1,812,879 - +0.1
1,812,879 - +1.0
1,812,879 - +0.8
1,812,879 - +0.2
1,812,898 + +0.7
1,812,898 + -0.5
1,812,951 - +3.0
1,813,066 + -0.3
1,813,098 + +0.5
1,813,099 - +0.3
1,813,170 + -1.0
1,813,170 + +0.4
1,813,170 + +0.5
1,813,170 + -0.5
1,813,171 - +0.2
1,813,171 - -0.5
1,813,171 - -0.4
1,813,181 + -0.8
1,813,181 + +0.2
1,813,182 - +0.2
1,813,298 + +1.3
1,813,298 + -0.1
1,813,299 - -0.1
1,813,488 + ABZR87_RS08540 0.36 -0.3
1,813,535 + ABZR87_RS08540 0.45 -1.0
1,813,536 - ABZR87_RS08540 0.46 +0.3
1,813,536 - ABZR87_RS08540 0.46 +0.7

Or see this region's nucleotide sequence