Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS07235

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS07225 and ABZR87_RS07230 are separated by 72 nucleotidesABZR87_RS07230 and ABZR87_RS07235 overlap by 4 nucleotidesABZR87_RS07235 and ABZR87_RS07240 are separated by 13 nucleotidesABZR87_RS07240 and ABZR87_RS07245 are separated by 35 nucleotides ABZR87_RS07225: ABZR87_RS07225 - beta-ketoacyl-[acyl-carrier-protein] synthase family protein, at 1,530,350 to 1,531,567 _RS07225 ABZR87_RS07230: ABZR87_RS07230 - polysaccharide deacetylase family protein, at 1,531,640 to 1,532,503 _RS07230 ABZR87_RS07235: ABZR87_RS07235 - MMPL family transporter, at 1,532,500 to 1,534,920 _RS07235 ABZR87_RS07240: ABZR87_RS07240 - LolA-related protein, at 1,534,934 to 1,535,491 _RS07240 ABZR87_RS07245: ABZR87_RS07245 - acyl-CoA synthetase, at 1,535,527 to 1,536,489 _RS07245 Position (kb) 1532 1533 1534 1535Strain fitness (log2 ratio) -2 -1 0 1 2at 1531.628 kb on + strandat 1531.628 kb on + strandat 1531.808 kb on + strand, within ABZR87_RS07230at 1531.808 kb on + strand, within ABZR87_RS07230at 1531.808 kb on + strand, within ABZR87_RS07230at 1531.808 kb on + strand, within ABZR87_RS07230at 1531.809 kb on - strand, within ABZR87_RS07230at 1531.809 kb on - strand, within ABZR87_RS07230at 1531.809 kb on - strand, within ABZR87_RS07230at 1531.809 kb on - strand, within ABZR87_RS07230at 1532.068 kb on + strand, within ABZR87_RS07230at 1532.069 kb on - strand, within ABZR87_RS07230at 1532.069 kb on - strand, within ABZR87_RS07230at 1532.069 kb on - strand, within ABZR87_RS07230at 1532.187 kb on + strand, within ABZR87_RS07230at 1532.727 kb on - strandat 1532.727 kb on - strandat 1532.942 kb on + strand, within ABZR87_RS07235at 1532.942 kb on + strand, within ABZR87_RS07235at 1532.943 kb on - strand, within ABZR87_RS07235at 1532.943 kb on - strand, within ABZR87_RS07235at 1532.951 kb on + strand, within ABZR87_RS07235at 1532.952 kb on - strand, within ABZR87_RS07235at 1532.952 kb on - strand, within ABZR87_RS07235at 1533.063 kb on + strand, within ABZR87_RS07235at 1533.063 kb on + strand, within ABZR87_RS07235at 1533.064 kb on - strand, within ABZR87_RS07235at 1533.064 kb on - strand, within ABZR87_RS07235at 1533.064 kb on - strand, within ABZR87_RS07235at 1533.360 kb on - strand, within ABZR87_RS07235at 1533.360 kb on - strand, within ABZR87_RS07235at 1533.482 kb on + strand, within ABZR87_RS07235at 1533.482 kb on + strand, within ABZR87_RS07235at 1533.743 kb on + strand, within ABZR87_RS07235at 1533.743 kb on + strand, within ABZR87_RS07235at 1533.744 kb on - strand, within ABZR87_RS07235at 1533.744 kb on - strand, within ABZR87_RS07235at 1533.744 kb on - strand, within ABZR87_RS07235at 1533.744 kb on - strand, within ABZR87_RS07235at 1533.783 kb on + strand, within ABZR87_RS07235at 1533.785 kb on + strand, within ABZR87_RS07235at 1533.785 kb on + strand, within ABZR87_RS07235at 1533.785 kb on + strand, within ABZR87_RS07235at 1533.881 kb on + strand, within ABZR87_RS07235at 1533.882 kb on - strand, within ABZR87_RS07235at 1533.882 kb on - strand, within ABZR87_RS07235at 1533.954 kb on - strand, within ABZR87_RS07235at 1533.954 kb on - strand, within ABZR87_RS07235at 1533.954 kb on - strand, within ABZR87_RS07235at 1533.954 kb on - strand, within ABZR87_RS07235at 1533.963 kb on - strand, within ABZR87_RS07235at 1534.109 kb on + strand, within ABZR87_RS07235at 1534.110 kb on - strand, within ABZR87_RS07235at 1534.287 kb on + strand, within ABZR87_RS07235at 1534.399 kb on + strand, within ABZR87_RS07235at 1534.577 kb on + strand, within ABZR87_RS07235at 1534.577 kb on + strand, within ABZR87_RS07235at 1534.577 kb on + strand, within ABZR87_RS07235at 1534.577 kb on + strand, within ABZR87_RS07235at 1534.577 kb on + strand, within ABZR87_RS07235at 1534.578 kb on - strand, within ABZR87_RS07235at 1534.578 kb on - strand, within ABZR87_RS07235at 1534.578 kb on - strand, within ABZR87_RS07235at 1534.578 kb on - strand, within ABZR87_RS07235at 1534.828 kb on - strandat 1534.828 kb on - strandat 1534.836 kb on + strandat 1535.010 kb on - strand, within ABZR87_RS07240at 1535.010 kb on - strand, within ABZR87_RS07240at 1535.010 kb on - strand, within ABZR87_RS07240at 1535.010 kb on - strand, within ABZR87_RS07240at 1535.121 kb on + strand, within ABZR87_RS07240at 1535.121 kb on + strand, within ABZR87_RS07240at 1535.121 kb on + strand, within ABZR87_RS07240at 1535.122 kb on - strand, within ABZR87_RS07240at 1535.122 kb on - strand, within ABZR87_RS07240at 1535.122 kb on - strand, within ABZR87_RS07240at 1535.139 kb on + strand, within ABZR87_RS07240at 1535.140 kb on - strand, within ABZR87_RS07240at 1535.177 kb on - strand, within ABZR87_RS07240at 1535.446 kb on + strandat 1535.447 kb on - strandat 1535.447 kb on - strandat 1535.514 kb on - strandat 1535.514 kb on - strandat 1535.609 kb on + strandat 1535.609 kb on + strandat 1535.609 kb on + strandat 1535.609 kb on + strandat 1535.609 kb on + strandat 1535.610 kb on - strandat 1535.610 kb on - strandat 1535.610 kb on - strandat 1535.610 kb on - strandat 1535.642 kb on + strand, within ABZR87_RS07245at 1535.642 kb on + strand, within ABZR87_RS07245at 1535.642 kb on + strand, within ABZR87_RS07245at 1535.642 kb on + strand, within ABZR87_RS07245at 1535.663 kb on + strand, within ABZR87_RS07245at 1535.664 kb on - strand, within ABZR87_RS07245at 1535.664 kb on - strand, within ABZR87_RS07245at 1535.743 kb on + strand, within ABZR87_RS07245at 1535.744 kb on - strand, within ABZR87_RS07245at 1535.751 kb on - strand, within ABZR87_RS07245

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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1,531,628 + +0.1
1,531,628 + +0.7
1,531,808 + ABZR87_RS07230 0.19 -0.1
1,531,808 + ABZR87_RS07230 0.19 -0.7
1,531,808 + ABZR87_RS07230 0.19 -0.3
1,531,808 + ABZR87_RS07230 0.19 +1.3
1,531,809 - ABZR87_RS07230 0.20 -0.3
1,531,809 - ABZR87_RS07230 0.20 +0.2
1,531,809 - ABZR87_RS07230 0.20 -0.0
1,531,809 - ABZR87_RS07230 0.20 +0.1
1,532,068 + ABZR87_RS07230 0.50 -0.2
1,532,069 - ABZR87_RS07230 0.50 -1.3
1,532,069 - ABZR87_RS07230 0.50 -0.9
1,532,069 - ABZR87_RS07230 0.50 -0.8
1,532,187 + ABZR87_RS07230 0.63 +1.5
1,532,727 - +0.4
1,532,727 - +0.2
1,532,942 + ABZR87_RS07235 0.18 +1.1
1,532,942 + ABZR87_RS07235 0.18 +0.5
1,532,943 - ABZR87_RS07235 0.18 -0.5
1,532,943 - ABZR87_RS07235 0.18 +1.6
1,532,951 + ABZR87_RS07235 0.19 -0.0
1,532,952 - ABZR87_RS07235 0.19 +1.9
1,532,952 - ABZR87_RS07235 0.19 -0.5
1,533,063 + ABZR87_RS07235 0.23 +0.5
1,533,063 + ABZR87_RS07235 0.23 +0.2
1,533,064 - ABZR87_RS07235 0.23 +0.1
1,533,064 - ABZR87_RS07235 0.23 +0.1
1,533,064 - ABZR87_RS07235 0.23 +0.4
1,533,360 - ABZR87_RS07235 0.36 +0.4
1,533,360 - ABZR87_RS07235 0.36 -0.7
1,533,482 + ABZR87_RS07235 0.41 +0.8
1,533,482 + ABZR87_RS07235 0.41 -1.4
1,533,743 + ABZR87_RS07235 0.51 +0.4
1,533,743 + ABZR87_RS07235 0.51 +0.7
1,533,744 - ABZR87_RS07235 0.51 +0.3
1,533,744 - ABZR87_RS07235 0.51 +2.0
1,533,744 - ABZR87_RS07235 0.51 +0.2
1,533,744 - ABZR87_RS07235 0.51 -1.1
1,533,783 + ABZR87_RS07235 0.53 +0.5
1,533,785 + ABZR87_RS07235 0.53 +1.7
1,533,785 + ABZR87_RS07235 0.53 -0.3
1,533,785 + ABZR87_RS07235 0.53 -0.1
1,533,881 + ABZR87_RS07235 0.57 +0.6
1,533,882 - ABZR87_RS07235 0.57 -0.7
1,533,882 - ABZR87_RS07235 0.57 +0.3
1,533,954 - ABZR87_RS07235 0.60 +1.0
1,533,954 - ABZR87_RS07235 0.60 -0.1
1,533,954 - ABZR87_RS07235 0.60 +0.0
1,533,954 - ABZR87_RS07235 0.60 +0.0
1,533,963 - ABZR87_RS07235 0.60 -0.3
1,534,109 + ABZR87_RS07235 0.66 +0.6
1,534,110 - ABZR87_RS07235 0.67 +0.6
1,534,287 + ABZR87_RS07235 0.74 +0.1
1,534,399 + ABZR87_RS07235 0.78 +0.9
1,534,577 + ABZR87_RS07235 0.86 -1.1
1,534,577 + ABZR87_RS07235 0.86 +0.5
1,534,577 + ABZR87_RS07235 0.86 +0.6
1,534,577 + ABZR87_RS07235 0.86 -0.0
1,534,577 + ABZR87_RS07235 0.86 -0.1
1,534,578 - ABZR87_RS07235 0.86 -0.1
1,534,578 - ABZR87_RS07235 0.86 -1.0
1,534,578 - ABZR87_RS07235 0.86 +0.8
1,534,578 - ABZR87_RS07235 0.86 +0.1
1,534,828 - +0.5
1,534,828 - +0.2
1,534,836 + -0.1
1,535,010 - ABZR87_RS07240 0.14 +0.6
1,535,010 - ABZR87_RS07240 0.14 +0.4
1,535,010 - ABZR87_RS07240 0.14 -0.0
1,535,010 - ABZR87_RS07240 0.14 -0.7
1,535,121 + ABZR87_RS07240 0.34 +0.9
1,535,121 + ABZR87_RS07240 0.34 +0.7
1,535,121 + ABZR87_RS07240 0.34 +0.5
1,535,122 - ABZR87_RS07240 0.34 -0.3
1,535,122 - ABZR87_RS07240 0.34 -0.3
1,535,122 - ABZR87_RS07240 0.34 -0.3
1,535,139 + ABZR87_RS07240 0.37 -0.3
1,535,140 - ABZR87_RS07240 0.37 +0.3
1,535,177 - ABZR87_RS07240 0.44 +0.8
1,535,446 + +1.0
1,535,447 - +0.1
1,535,447 - +0.7
1,535,514 - +0.9
1,535,514 - +0.0
1,535,609 + -0.4
1,535,609 + -1.1
1,535,609 + -1.9
1,535,609 + +1.0
1,535,609 + +0.4
1,535,610 - +0.4
1,535,610 - -0.1
1,535,610 - -0.4
1,535,610 - -0.3
1,535,642 + ABZR87_RS07245 0.12 -0.3
1,535,642 + ABZR87_RS07245 0.12 -1.7
1,535,642 + ABZR87_RS07245 0.12 +1.3
1,535,642 + ABZR87_RS07245 0.12 +0.7
1,535,663 + ABZR87_RS07245 0.14 -0.1
1,535,664 - ABZR87_RS07245 0.14 -0.1
1,535,664 - ABZR87_RS07245 0.14 +1.4
1,535,743 + ABZR87_RS07245 0.22 +0.6
1,535,744 - ABZR87_RS07245 0.23 +1.7
1,535,751 - ABZR87_RS07245 0.23 +0.2

Or see this region's nucleotide sequence