Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS06670

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS06665 and ABZR87_RS06670 are separated by 163 nucleotidesABZR87_RS06670 and ABZR87_RS06675 are separated by 14 nucleotides ABZR87_RS06665: ABZR87_RS06665 - MFS transporter, at 1,417,449 to 1,418,876 _RS06665 ABZR87_RS06670: ABZR87_RS06670 - MarR family transcriptional regulator, at 1,419,040 to 1,419,537 _RS06670 ABZR87_RS06675: ABZR87_RS06675 - YifB family Mg chelatase-like AAA ATPase, at 1,419,552 to 1,421,084 _RS06675 Position (kb) 1419 1420Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1418.043 kb on + strand, within ABZR87_RS06665at 1418.044 kb on + strand, within ABZR87_RS06665at 1418.044 kb on + strand, within ABZR87_RS06665at 1418.045 kb on - strand, within ABZR87_RS06665at 1418.045 kb on - strand, within ABZR87_RS06665at 1418.074 kb on + strand, within ABZR87_RS06665at 1418.074 kb on + strand, within ABZR87_RS06665at 1418.074 kb on + strand, within ABZR87_RS06665at 1418.074 kb on + strand, within ABZR87_RS06665at 1418.181 kb on - strand, within ABZR87_RS06665at 1418.362 kb on + strand, within ABZR87_RS06665at 1418.362 kb on + strand, within ABZR87_RS06665at 1418.362 kb on + strand, within ABZR87_RS06665at 1418.362 kb on + strand, within ABZR87_RS06665at 1418.363 kb on - strand, within ABZR87_RS06665at 1418.363 kb on - strand, within ABZR87_RS06665at 1418.363 kb on - strand, within ABZR87_RS06665at 1418.363 kb on - strand, within ABZR87_RS06665at 1418.363 kb on - strand, within ABZR87_RS06665at 1418.363 kb on - strand, within ABZR87_RS06665at 1418.482 kb on + strand, within ABZR87_RS06665at 1418.482 kb on + strand, within ABZR87_RS06665at 1418.482 kb on + strand, within ABZR87_RS06665at 1418.482 kb on + strand, within ABZR87_RS06665at 1418.483 kb on - strand, within ABZR87_RS06665at 1418.483 kb on - strand, within ABZR87_RS06665at 1418.483 kb on - strand, within ABZR87_RS06665at 1418.523 kb on + strand, within ABZR87_RS06665at 1418.523 kb on + strand, within ABZR87_RS06665at 1418.524 kb on - strand, within ABZR87_RS06665at 1418.524 kb on - strand, within ABZR87_RS06665at 1418.608 kb on + strand, within ABZR87_RS06665at 1418.609 kb on - strand, within ABZR87_RS06665at 1418.609 kb on - strand, within ABZR87_RS06665at 1418.701 kb on + strand, within ABZR87_RS06665at 1418.701 kb on + strand, within ABZR87_RS06665at 1418.701 kb on + strand, within ABZR87_RS06665at 1418.701 kb on + strand, within ABZR87_RS06665at 1418.702 kb on - strand, within ABZR87_RS06665at 1418.702 kb on - strand, within ABZR87_RS06665at 1418.702 kb on - strand, within ABZR87_RS06665at 1418.702 kb on - strand, within ABZR87_RS06665at 1418.702 kb on - strand, within ABZR87_RS06665at 1418.702 kb on - strand, within ABZR87_RS06665at 1418.702 kb on - strand, within ABZR87_RS06665at 1418.758 kb on + strandat 1418.759 kb on - strandat 1418.974 kb on - strandat 1419.182 kb on - strand, within ABZR87_RS06670at 1419.241 kb on + strand, within ABZR87_RS06670at 1419.265 kb on + strand, within ABZR87_RS06670at 1419.266 kb on - strand, within ABZR87_RS06670at 1419.266 kb on - strand, within ABZR87_RS06670at 1419.577 kb on + strandat 1419.668 kb on - strandat 1419.668 kb on - strandat 1419.921 kb on + strand, within ABZR87_RS06675at 1419.921 kb on + strand, within ABZR87_RS06675at 1419.921 kb on + strand, within ABZR87_RS06675at 1419.922 kb on - strand, within ABZR87_RS06675at 1420.202 kb on + strand, within ABZR87_RS06675at 1420.202 kb on + strand, within ABZR87_RS06675at 1420.203 kb on - strand, within ABZR87_RS06675at 1420.203 kb on - strand, within ABZR87_RS06675at 1420.203 kb on - strand, within ABZR87_RS06675at 1420.203 kb on - strand, within ABZR87_RS06675at 1420.203 kb on - strand, within ABZR87_RS06675at 1420.203 kb on - strand, within ABZR87_RS06675

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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1,418,043 + ABZR87_RS06665 0.42 -0.4
1,418,044 + ABZR87_RS06665 0.42 -1.3
1,418,044 + ABZR87_RS06665 0.42 +0.4
1,418,045 - ABZR87_RS06665 0.42 -0.5
1,418,045 - ABZR87_RS06665 0.42 +0.8
1,418,074 + ABZR87_RS06665 0.44 +0.1
1,418,074 + ABZR87_RS06665 0.44 +1.8
1,418,074 + ABZR87_RS06665 0.44 -0.5
1,418,074 + ABZR87_RS06665 0.44 -0.2
1,418,181 - ABZR87_RS06665 0.51 +1.8
1,418,362 + ABZR87_RS06665 0.64 +0.5
1,418,362 + ABZR87_RS06665 0.64 +1.1
1,418,362 + ABZR87_RS06665 0.64 +0.3
1,418,362 + ABZR87_RS06665 0.64 -1.3
1,418,363 - ABZR87_RS06665 0.64 -0.3
1,418,363 - ABZR87_RS06665 0.64 -2.8
1,418,363 - ABZR87_RS06665 0.64 +0.8
1,418,363 - ABZR87_RS06665 0.64 -0.5
1,418,363 - ABZR87_RS06665 0.64 +0.2
1,418,363 - ABZR87_RS06665 0.64 +0.4
1,418,482 + ABZR87_RS06665 0.72 -0.4
1,418,482 + ABZR87_RS06665 0.72 +0.3
1,418,482 + ABZR87_RS06665 0.72 -0.0
1,418,482 + ABZR87_RS06665 0.72 +0.7
1,418,483 - ABZR87_RS06665 0.72 -0.1
1,418,483 - ABZR87_RS06665 0.72 +0.2
1,418,483 - ABZR87_RS06665 0.72 +0.1
1,418,523 + ABZR87_RS06665 0.75 -0.4
1,418,523 + ABZR87_RS06665 0.75 -0.6
1,418,524 - ABZR87_RS06665 0.75 +0.0
1,418,524 - ABZR87_RS06665 0.75 -0.9
1,418,608 + ABZR87_RS06665 0.81 +0.3
1,418,609 - ABZR87_RS06665 0.81 -1.5
1,418,609 - ABZR87_RS06665 0.81 +0.9
1,418,701 + ABZR87_RS06665 0.88 +0.0
1,418,701 + ABZR87_RS06665 0.88 -0.2
1,418,701 + ABZR87_RS06665 0.88 -0.1
1,418,701 + ABZR87_RS06665 0.88 +0.1
1,418,702 - ABZR87_RS06665 0.88 +0.0
1,418,702 - ABZR87_RS06665 0.88 -0.2
1,418,702 - ABZR87_RS06665 0.88 +0.2
1,418,702 - ABZR87_RS06665 0.88 +0.4
1,418,702 - ABZR87_RS06665 0.88 +0.5
1,418,702 - ABZR87_RS06665 0.88 -0.0
1,418,702 - ABZR87_RS06665 0.88 +1.0
1,418,758 + -0.0
1,418,759 - +0.0
1,418,974 - +1.0
1,419,182 - ABZR87_RS06670 0.29 -1.4
1,419,241 + ABZR87_RS06670 0.40 -1.5
1,419,265 + ABZR87_RS06670 0.45 +0.3
1,419,266 - ABZR87_RS06670 0.45 -0.6
1,419,266 - ABZR87_RS06670 0.45 -0.1
1,419,577 + +0.6
1,419,668 - -0.3
1,419,668 - +0.3
1,419,921 + ABZR87_RS06675 0.24 -0.9
1,419,921 + ABZR87_RS06675 0.24 -0.2
1,419,921 + ABZR87_RS06675 0.24 -1.0
1,419,922 - ABZR87_RS06675 0.24 -0.0
1,420,202 + ABZR87_RS06675 0.42 -0.8
1,420,202 + ABZR87_RS06675 0.42 +0.7
1,420,203 - ABZR87_RS06675 0.42 -0.9
1,420,203 - ABZR87_RS06675 0.42 -0.0
1,420,203 - ABZR87_RS06675 0.42 -1.1
1,420,203 - ABZR87_RS06675 0.42 -0.4
1,420,203 - ABZR87_RS06675 0.42 +1.5
1,420,203 - ABZR87_RS06675 0.42 -0.5

Or see this region's nucleotide sequence