Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS06630 and ABZR87_RS06635 are separated by 25 nucleotides ABZR87_RS06635 and ABZR87_RS06640 are separated by 62 nucleotides ABZR87_RS06640 and ABZR87_RS06645 are separated by 137 nucleotides
ABZR87_RS06630: ABZR87_RS06630 - sensor histidine kinase, at 1,410,555 to 1,412,573
_RS06630
ABZR87_RS06635: ABZR87_RS06635 - sigma-54 dependent transcriptional regulator, at 1,412,599 to 1,413,915
_RS06635
ABZR87_RS06640: ABZR87_RS06640 - DUF2278 family protein, at 1,413,978 to 1,414,715
_RS06640
ABZR87_RS06645: ABZR87_RS06645 - TlpA disulfide reductase family protein, at 1,414,853 to 1,415,410
_RS06645
Position (kb)
1412
1413
1414 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1411.644 kb on + strand, within ABZR87_RS06630 at 1411.644 kb on + strand, within ABZR87_RS06630 at 1411.645 kb on - strand, within ABZR87_RS06630 at 1411.685 kb on + strand, within ABZR87_RS06630 at 1411.710 kb on + strand, within ABZR87_RS06630 at 1411.710 kb on + strand, within ABZR87_RS06630 at 1411.710 kb on + strand, within ABZR87_RS06630 at 1411.711 kb on - strand, within ABZR87_RS06630 at 1412.291 kb on + strand, within ABZR87_RS06630 at 1412.292 kb on - strand, within ABZR87_RS06630 at 1412.292 kb on - strand, within ABZR87_RS06630 at 1412.292 kb on - strand, within ABZR87_RS06630 at 1412.292 kb on - strand, within ABZR87_RS06630 at 1412.525 kb on + strand at 1412.526 kb on - strand at 1412.526 kb on - strand at 1412.540 kb on - strand at 1413.462 kb on + strand, within ABZR87_RS06635 at 1413.463 kb on - strand, within ABZR87_RS06635 at 1413.505 kb on + strand, within ABZR87_RS06635 at 1413.505 kb on + strand, within ABZR87_RS06635 at 1413.505 kb on + strand, within ABZR87_RS06635 at 1413.505 kb on + strand, within ABZR87_RS06635 at 1413.505 kb on + strand, within ABZR87_RS06635 at 1413.506 kb on - strand, within ABZR87_RS06635 at 1413.506 kb on - strand, within ABZR87_RS06635 at 1413.506 kb on - strand, within ABZR87_RS06635 at 1413.508 kb on + strand, within ABZR87_RS06635 at 1413.508 kb on + strand, within ABZR87_RS06635 at 1413.508 kb on + strand, within ABZR87_RS06635 at 1413.611 kb on - strand, within ABZR87_RS06635 at 1413.794 kb on - strand at 1413.794 kb on - strand at 1413.886 kb on + strand at 1413.886 kb on + strand at 1413.886 kb on + strand at 1413.887 kb on - strand at 1413.904 kb on + strand at 1413.905 kb on - strand at 1413.905 kb on - strand at 1414.148 kb on + strand, within ABZR87_RS06640 at 1414.148 kb on + strand, within ABZR87_RS06640 at 1414.148 kb on + strand, within ABZR87_RS06640 at 1414.148 kb on + strand, within ABZR87_RS06640 at 1414.148 kb on + strand, within ABZR87_RS06640 at 1414.148 kb on + strand, within ABZR87_RS06640 at 1414.148 kb on + strand, within ABZR87_RS06640 at 1414.149 kb on - strand, within ABZR87_RS06640 at 1414.149 kb on - strand, within ABZR87_RS06640 at 1414.228 kb on + strand, within ABZR87_RS06640 at 1414.229 kb on - strand, within ABZR87_RS06640 at 1414.229 kb on - strand, within ABZR87_RS06640 at 1414.291 kb on + strand, within ABZR87_RS06640 at 1414.291 kb on + strand, within ABZR87_RS06640 at 1414.292 kb on - strand, within ABZR87_RS06640 at 1414.297 kb on + strand, within ABZR87_RS06640 at 1414.297 kb on + strand, within ABZR87_RS06640 at 1414.297 kb on + strand, within ABZR87_RS06640 at 1414.297 kb on + strand, within ABZR87_RS06640 at 1414.298 kb on - strand, within ABZR87_RS06640 at 1414.298 kb on - strand, within ABZR87_RS06640 at 1414.298 kb on - strand, within ABZR87_RS06640 at 1414.376 kb on + strand, within ABZR87_RS06640 at 1414.432 kb on + strand, within ABZR87_RS06640 at 1414.432 kb on + strand, within ABZR87_RS06640 at 1414.432 kb on + strand, within ABZR87_RS06640 at 1414.432 kb on + strand, within ABZR87_RS06640 at 1414.433 kb on - strand, within ABZR87_RS06640 at 1414.525 kb on + strand, within ABZR87_RS06640 at 1414.525 kb on + strand, within ABZR87_RS06640 at 1414.525 kb on + strand, within ABZR87_RS06640 at 1414.526 kb on - strand, within ABZR87_RS06640 at 1414.526 kb on - strand, within ABZR87_RS06640 at 1414.633 kb on + strand, within ABZR87_RS06640 at 1414.633 kb on + strand, within ABZR87_RS06640 at 1414.651 kb on + strand at 1414.652 kb on - strand at 1414.652 kb on - strand at 1414.663 kb on + strand at 1414.663 kb on + strand at 1414.664 kb on - strand at 1414.702 kb on + strand at 1414.702 kb on + strand at 1414.702 kb on + strand at 1414.703 kb on - strand at 1414.703 kb on - strand at 1414.774 kb on + strand at 1414.774 kb on + strand at 1414.774 kb on + strand at 1414.774 kb on + strand at 1414.774 kb on + strand at 1414.775 kb on - strand at 1414.775 kb on - strand at 1414.775 kb on - strand at 1414.775 kb on - strand at 1414.775 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 1,411,644 + ABZR87_RS06630 0.54 +0.5 1,411,644 + ABZR87_RS06630 0.54 +0.4 1,411,645 - ABZR87_RS06630 0.54 +0.3 1,411,685 + ABZR87_RS06630 0.56 -1.0 1,411,710 + ABZR87_RS06630 0.57 -0.3 1,411,710 + ABZR87_RS06630 0.57 -0.2 1,411,710 + ABZR87_RS06630 0.57 +0.9 1,411,711 - ABZR87_RS06630 0.57 -2.0 1,412,291 + ABZR87_RS06630 0.86 +1.8 1,412,292 - ABZR87_RS06630 0.86 +0.7 1,412,292 - ABZR87_RS06630 0.86 -1.4 1,412,292 - ABZR87_RS06630 0.86 -2.0 1,412,292 - ABZR87_RS06630 0.86 -1.5 1,412,525 + +1.7 1,412,526 - -3.5 1,412,526 - -2.2 1,412,540 - -2.1 1,413,462 + ABZR87_RS06635 0.66 +0.5 1,413,463 - ABZR87_RS06635 0.66 -2.4 1,413,505 + ABZR87_RS06635 0.69 -3.4 1,413,505 + ABZR87_RS06635 0.69 -1.7 1,413,505 + ABZR87_RS06635 0.69 -3.7 1,413,505 + ABZR87_RS06635 0.69 -2.7 1,413,505 + ABZR87_RS06635 0.69 -3.1 1,413,506 - ABZR87_RS06635 0.69 -1.9 1,413,506 - ABZR87_RS06635 0.69 -1.9 1,413,506 - ABZR87_RS06635 0.69 -3.2 1,413,508 + ABZR87_RS06635 0.69 -2.5 1,413,508 + ABZR87_RS06635 0.69 -2.3 1,413,508 + ABZR87_RS06635 0.69 -4.0 1,413,611 - ABZR87_RS06635 0.77 -2.8 1,413,794 - -2.5 1,413,794 - -2.2 1,413,886 + -3.7 1,413,886 + -3.1 1,413,886 + -2.1 1,413,887 - -3.6 1,413,904 + -3.3 1,413,905 - +0.7 1,413,905 - -3.9 1,414,148 + ABZR87_RS06640 0.23 -2.9 1,414,148 + ABZR87_RS06640 0.23 +0.2 1,414,148 + ABZR87_RS06640 0.23 -2.1 1,414,148 + ABZR87_RS06640 0.23 -0.8 1,414,148 + ABZR87_RS06640 0.23 +0.5 1,414,148 + ABZR87_RS06640 0.23 -1.3 1,414,148 + ABZR87_RS06640 0.23 -0.7 1,414,149 - ABZR87_RS06640 0.23 -0.7 1,414,149 - ABZR87_RS06640 0.23 -0.2 1,414,228 + ABZR87_RS06640 0.34 +0.7 1,414,229 - ABZR87_RS06640 0.34 +0.4 1,414,229 - ABZR87_RS06640 0.34 -0.4 1,414,291 + ABZR87_RS06640 0.42 +0.5 1,414,291 + ABZR87_RS06640 0.42 +0.7 1,414,292 - ABZR87_RS06640 0.43 -0.0 1,414,297 + ABZR87_RS06640 0.43 +0.6 1,414,297 + ABZR87_RS06640 0.43 -0.5 1,414,297 + ABZR87_RS06640 0.43 -0.2 1,414,297 + ABZR87_RS06640 0.43 -0.3 1,414,298 - ABZR87_RS06640 0.43 -0.1 1,414,298 - ABZR87_RS06640 0.43 +0.4 1,414,298 - ABZR87_RS06640 0.43 +0.1 1,414,376 + ABZR87_RS06640 0.54 +0.0 1,414,432 + ABZR87_RS06640 0.62 +0.6 1,414,432 + ABZR87_RS06640 0.62 +0.7 1,414,432 + ABZR87_RS06640 0.62 +0.2 1,414,432 + ABZR87_RS06640 0.62 +0.4 1,414,433 - ABZR87_RS06640 0.62 -0.1 1,414,525 + ABZR87_RS06640 0.74 -1.0 1,414,525 + ABZR87_RS06640 0.74 +0.4 1,414,525 + ABZR87_RS06640 0.74 -0.3 1,414,526 - ABZR87_RS06640 0.74 -0.6 1,414,526 - ABZR87_RS06640 0.74 +0.3 1,414,633 + ABZR87_RS06640 0.89 +0.5 1,414,633 + ABZR87_RS06640 0.89 -0.8 1,414,651 + +0.5 1,414,652 - +0.0 1,414,652 - -0.7 1,414,663 + +0.3 1,414,663 + -0.8 1,414,664 - -0.4 1,414,702 + +0.2 1,414,702 + -1.4 1,414,702 + +1.0 1,414,703 - +1.7 1,414,703 - -0.1 1,414,774 + -0.3 1,414,774 + +1.1 1,414,774 + +1.6 1,414,774 + +0.9 1,414,774 + -0.1 1,414,775 - -1.0 1,414,775 - +0.3 1,414,775 - -0.1 1,414,775 - +0.2 1,414,775 - +0.3
Or see this region's nucleotide sequence