Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS06635

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS06630 and ABZR87_RS06635 are separated by 25 nucleotidesABZR87_RS06635 and ABZR87_RS06640 are separated by 62 nucleotidesABZR87_RS06640 and ABZR87_RS06645 are separated by 137 nucleotides ABZR87_RS06630: ABZR87_RS06630 - sensor histidine kinase, at 1,410,555 to 1,412,573 _RS06630 ABZR87_RS06635: ABZR87_RS06635 - sigma-54 dependent transcriptional regulator, at 1,412,599 to 1,413,915 _RS06635 ABZR87_RS06640: ABZR87_RS06640 - DUF2278 family protein, at 1,413,978 to 1,414,715 _RS06640 ABZR87_RS06645: ABZR87_RS06645 - TlpA disulfide reductase family protein, at 1,414,853 to 1,415,410 _RS06645 Position (kb) 1412 1413 1414Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1411.644 kb on + strand, within ABZR87_RS06630at 1411.644 kb on + strand, within ABZR87_RS06630at 1411.645 kb on - strand, within ABZR87_RS06630at 1411.685 kb on + strand, within ABZR87_RS06630at 1411.710 kb on + strand, within ABZR87_RS06630at 1411.710 kb on + strand, within ABZR87_RS06630at 1411.710 kb on + strand, within ABZR87_RS06630at 1411.711 kb on - strand, within ABZR87_RS06630at 1412.291 kb on + strand, within ABZR87_RS06630at 1412.292 kb on - strand, within ABZR87_RS06630at 1412.292 kb on - strand, within ABZR87_RS06630at 1412.292 kb on - strand, within ABZR87_RS06630at 1412.292 kb on - strand, within ABZR87_RS06630at 1412.525 kb on + strandat 1412.526 kb on - strandat 1412.526 kb on - strandat 1412.540 kb on - strandat 1413.462 kb on + strand, within ABZR87_RS06635at 1413.463 kb on - strand, within ABZR87_RS06635at 1413.505 kb on + strand, within ABZR87_RS06635at 1413.505 kb on + strand, within ABZR87_RS06635at 1413.505 kb on + strand, within ABZR87_RS06635at 1413.505 kb on + strand, within ABZR87_RS06635at 1413.505 kb on + strand, within ABZR87_RS06635at 1413.506 kb on - strand, within ABZR87_RS06635at 1413.506 kb on - strand, within ABZR87_RS06635at 1413.506 kb on - strand, within ABZR87_RS06635at 1413.508 kb on + strand, within ABZR87_RS06635at 1413.508 kb on + strand, within ABZR87_RS06635at 1413.508 kb on + strand, within ABZR87_RS06635at 1413.611 kb on - strand, within ABZR87_RS06635at 1413.794 kb on - strandat 1413.794 kb on - strandat 1413.886 kb on + strandat 1413.886 kb on + strandat 1413.886 kb on + strandat 1413.887 kb on - strandat 1413.904 kb on + strandat 1413.905 kb on - strandat 1413.905 kb on - strandat 1414.148 kb on + strand, within ABZR87_RS06640at 1414.148 kb on + strand, within ABZR87_RS06640at 1414.148 kb on + strand, within ABZR87_RS06640at 1414.148 kb on + strand, within ABZR87_RS06640at 1414.148 kb on + strand, within ABZR87_RS06640at 1414.148 kb on + strand, within ABZR87_RS06640at 1414.148 kb on + strand, within ABZR87_RS06640at 1414.149 kb on - strand, within ABZR87_RS06640at 1414.149 kb on - strand, within ABZR87_RS06640at 1414.228 kb on + strand, within ABZR87_RS06640at 1414.229 kb on - strand, within ABZR87_RS06640at 1414.229 kb on - strand, within ABZR87_RS06640at 1414.291 kb on + strand, within ABZR87_RS06640at 1414.291 kb on + strand, within ABZR87_RS06640at 1414.292 kb on - strand, within ABZR87_RS06640at 1414.297 kb on + strand, within ABZR87_RS06640at 1414.297 kb on + strand, within ABZR87_RS06640at 1414.297 kb on + strand, within ABZR87_RS06640at 1414.297 kb on + strand, within ABZR87_RS06640at 1414.298 kb on - strand, within ABZR87_RS06640at 1414.298 kb on - strand, within ABZR87_RS06640at 1414.298 kb on - strand, within ABZR87_RS06640at 1414.376 kb on + strand, within ABZR87_RS06640at 1414.432 kb on + strand, within ABZR87_RS06640at 1414.432 kb on + strand, within ABZR87_RS06640at 1414.432 kb on + strand, within ABZR87_RS06640at 1414.432 kb on + strand, within ABZR87_RS06640at 1414.433 kb on - strand, within ABZR87_RS06640at 1414.525 kb on + strand, within ABZR87_RS06640at 1414.525 kb on + strand, within ABZR87_RS06640at 1414.525 kb on + strand, within ABZR87_RS06640at 1414.526 kb on - strand, within ABZR87_RS06640at 1414.526 kb on - strand, within ABZR87_RS06640at 1414.633 kb on + strand, within ABZR87_RS06640at 1414.633 kb on + strand, within ABZR87_RS06640at 1414.651 kb on + strandat 1414.652 kb on - strandat 1414.652 kb on - strandat 1414.663 kb on + strandat 1414.663 kb on + strandat 1414.664 kb on - strandat 1414.702 kb on + strandat 1414.702 kb on + strandat 1414.702 kb on + strandat 1414.703 kb on - strandat 1414.703 kb on - strandat 1414.774 kb on + strandat 1414.774 kb on + strandat 1414.774 kb on + strandat 1414.774 kb on + strandat 1414.774 kb on + strandat 1414.775 kb on - strandat 1414.775 kb on - strandat 1414.775 kb on - strandat 1414.775 kb on - strandat 1414.775 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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1,411,644 + ABZR87_RS06630 0.54 +0.5
1,411,644 + ABZR87_RS06630 0.54 +0.4
1,411,645 - ABZR87_RS06630 0.54 +0.3
1,411,685 + ABZR87_RS06630 0.56 -1.0
1,411,710 + ABZR87_RS06630 0.57 -0.3
1,411,710 + ABZR87_RS06630 0.57 -0.2
1,411,710 + ABZR87_RS06630 0.57 +0.9
1,411,711 - ABZR87_RS06630 0.57 -2.0
1,412,291 + ABZR87_RS06630 0.86 +1.8
1,412,292 - ABZR87_RS06630 0.86 +0.7
1,412,292 - ABZR87_RS06630 0.86 -1.4
1,412,292 - ABZR87_RS06630 0.86 -2.0
1,412,292 - ABZR87_RS06630 0.86 -1.5
1,412,525 + +1.7
1,412,526 - -3.5
1,412,526 - -2.2
1,412,540 - -2.1
1,413,462 + ABZR87_RS06635 0.66 +0.5
1,413,463 - ABZR87_RS06635 0.66 -2.4
1,413,505 + ABZR87_RS06635 0.69 -3.4
1,413,505 + ABZR87_RS06635 0.69 -1.7
1,413,505 + ABZR87_RS06635 0.69 -3.7
1,413,505 + ABZR87_RS06635 0.69 -2.7
1,413,505 + ABZR87_RS06635 0.69 -3.1
1,413,506 - ABZR87_RS06635 0.69 -1.9
1,413,506 - ABZR87_RS06635 0.69 -1.9
1,413,506 - ABZR87_RS06635 0.69 -3.2
1,413,508 + ABZR87_RS06635 0.69 -2.5
1,413,508 + ABZR87_RS06635 0.69 -2.3
1,413,508 + ABZR87_RS06635 0.69 -4.0
1,413,611 - ABZR87_RS06635 0.77 -2.8
1,413,794 - -2.5
1,413,794 - -2.2
1,413,886 + -3.7
1,413,886 + -3.1
1,413,886 + -2.1
1,413,887 - -3.6
1,413,904 + -3.3
1,413,905 - +0.7
1,413,905 - -3.9
1,414,148 + ABZR87_RS06640 0.23 -2.9
1,414,148 + ABZR87_RS06640 0.23 +0.2
1,414,148 + ABZR87_RS06640 0.23 -2.1
1,414,148 + ABZR87_RS06640 0.23 -0.8
1,414,148 + ABZR87_RS06640 0.23 +0.5
1,414,148 + ABZR87_RS06640 0.23 -1.3
1,414,148 + ABZR87_RS06640 0.23 -0.7
1,414,149 - ABZR87_RS06640 0.23 -0.7
1,414,149 - ABZR87_RS06640 0.23 -0.2
1,414,228 + ABZR87_RS06640 0.34 +0.7
1,414,229 - ABZR87_RS06640 0.34 +0.4
1,414,229 - ABZR87_RS06640 0.34 -0.4
1,414,291 + ABZR87_RS06640 0.42 +0.5
1,414,291 + ABZR87_RS06640 0.42 +0.7
1,414,292 - ABZR87_RS06640 0.43 -0.0
1,414,297 + ABZR87_RS06640 0.43 +0.6
1,414,297 + ABZR87_RS06640 0.43 -0.5
1,414,297 + ABZR87_RS06640 0.43 -0.2
1,414,297 + ABZR87_RS06640 0.43 -0.3
1,414,298 - ABZR87_RS06640 0.43 -0.1
1,414,298 - ABZR87_RS06640 0.43 +0.4
1,414,298 - ABZR87_RS06640 0.43 +0.1
1,414,376 + ABZR87_RS06640 0.54 +0.0
1,414,432 + ABZR87_RS06640 0.62 +0.6
1,414,432 + ABZR87_RS06640 0.62 +0.7
1,414,432 + ABZR87_RS06640 0.62 +0.2
1,414,432 + ABZR87_RS06640 0.62 +0.4
1,414,433 - ABZR87_RS06640 0.62 -0.1
1,414,525 + ABZR87_RS06640 0.74 -1.0
1,414,525 + ABZR87_RS06640 0.74 +0.4
1,414,525 + ABZR87_RS06640 0.74 -0.3
1,414,526 - ABZR87_RS06640 0.74 -0.6
1,414,526 - ABZR87_RS06640 0.74 +0.3
1,414,633 + ABZR87_RS06640 0.89 +0.5
1,414,633 + ABZR87_RS06640 0.89 -0.8
1,414,651 + +0.5
1,414,652 - +0.0
1,414,652 - -0.7
1,414,663 + +0.3
1,414,663 + -0.8
1,414,664 - -0.4
1,414,702 + +0.2
1,414,702 + -1.4
1,414,702 + +1.0
1,414,703 - +1.7
1,414,703 - -0.1
1,414,774 + -0.3
1,414,774 + +1.1
1,414,774 + +1.6
1,414,774 + +0.9
1,414,774 + -0.1
1,414,775 - -1.0
1,414,775 - +0.3
1,414,775 - -0.1
1,414,775 - +0.2
1,414,775 - +0.3

Or see this region's nucleotide sequence