Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS02575

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS02570 and ABZR87_RS02575 are separated by 258 nucleotidesABZR87_RS02575 and ABZR87_RS02580 are separated by 248 nucleotides ABZR87_RS02570: ABZR87_RS02570 - glutamate synthase-related protein, at 542,764 to 547,485 _RS02570 ABZR87_RS02575: ABZR87_RS02575 - transposase, at 547,744 to 548,469 _RS02575 ABZR87_RS02580: ABZR87_RS02580 - OmpW family protein, at 548,718 to 549,392 _RS02580 Position (kb) 547 548 549Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 546.815 kb on + strand, within ABZR87_RS02570at 546.815 kb on + strand, within ABZR87_RS02570at 546.815 kb on + strand, within ABZR87_RS02570at 546.815 kb on + strand, within ABZR87_RS02570at 546.816 kb on - strand, within ABZR87_RS02570at 546.816 kb on - strand, within ABZR87_RS02570at 546.816 kb on - strand, within ABZR87_RS02570at 546.818 kb on + strand, within ABZR87_RS02570at 546.818 kb on + strand, within ABZR87_RS02570at 546.818 kb on + strand, within ABZR87_RS02570at 546.818 kb on + strand, within ABZR87_RS02570at 546.854 kb on + strand, within ABZR87_RS02570at 546.854 kb on + strand, within ABZR87_RS02570at 546.854 kb on + strand, within ABZR87_RS02570at 546.854 kb on + strand, within ABZR87_RS02570at 546.855 kb on - strand, within ABZR87_RS02570at 546.855 kb on - strand, within ABZR87_RS02570at 546.855 kb on - strand, within ABZR87_RS02570at 546.855 kb on - strand, within ABZR87_RS02570at 546.891 kb on - strand, within ABZR87_RS02570at 546.891 kb on - strand, within ABZR87_RS02570at 546.891 kb on - strand, within ABZR87_RS02570at 546.891 kb on - strand, within ABZR87_RS02570at 546.953 kb on + strand, within ABZR87_RS02570at 546.954 kb on - strand, within ABZR87_RS02570at 546.954 kb on - strand, within ABZR87_RS02570at 546.954 kb on - strand, within ABZR87_RS02570at 546.954 kb on - strand, within ABZR87_RS02570at 546.954 kb on - strand, within ABZR87_RS02570at 546.954 kb on - strand, within ABZR87_RS02570at 547.165 kb on - strandat 547.190 kb on + strandat 547.368 kb on + strandat 547.368 kb on + strandat 547.368 kb on + strandat 547.368 kb on + strandat 547.430 kb on + strandat 547.431 kb on - strandat 547.504 kb on + strandat 547.504 kb on + strandat 547.504 kb on + strandat 547.504 kb on + strandat 547.504 kb on + strandat 547.504 kb on + strandat 547.504 kb on + strandat 547.504 kb on + strandat 547.505 kb on - strandat 547.505 kb on - strandat 547.505 kb on - strandat 547.505 kb on - strandat 547.505 kb on - strandat 547.505 kb on - strandat 547.505 kb on - strandat 547.597 kb on - strandat 547.600 kb on - strandat 547.600 kb on - strandat 547.601 kb on + strandat 547.601 kb on + strandat 547.601 kb on + strandat 547.601 kb on + strandat 547.602 kb on - strandat 547.602 kb on - strandat 547.602 kb on - strandat 547.602 kb on - strandat 547.602 kb on - strandat 547.602 kb on - strandat 547.602 kb on - strandat 547.656 kb on + strandat 547.657 kb on - strandat 547.681 kb on + strandat 547.681 kb on + strandat 547.682 kb on - strandat 547.684 kb on + strandat 547.684 kb on + strandat 547.685 kb on - strandat 547.745 kb on + strandat 547.909 kb on + strand, within ABZR87_RS02575at 547.909 kb on + strand, within ABZR87_RS02575at 547.992 kb on - strand, within ABZR87_RS02575at 547.997 kb on + strand, within ABZR87_RS02575at 547.997 kb on + strand, within ABZR87_RS02575at 547.997 kb on + strand, within ABZR87_RS02575at 547.997 kb on + strand, within ABZR87_RS02575at 547.998 kb on - strand, within ABZR87_RS02575at 547.998 kb on - strand, within ABZR87_RS02575at 548.045 kb on + strand, within ABZR87_RS02575at 548.045 kb on + strand, within ABZR87_RS02575at 548.045 kb on + strand, within ABZR87_RS02575at 548.045 kb on + strand, within ABZR87_RS02575at 548.045 kb on + strand, within ABZR87_RS02575at 548.045 kb on + strand, within ABZR87_RS02575at 548.046 kb on - strand, within ABZR87_RS02575at 548.046 kb on - strand, within ABZR87_RS02575at 548.046 kb on - strand, within ABZR87_RS02575at 548.046 kb on - strand, within ABZR87_RS02575at 548.046 kb on - strand, within ABZR87_RS02575at 548.046 kb on - strand, within ABZR87_RS02575at 548.046 kb on - strand, within ABZR87_RS02575at 548.111 kb on + strand, within ABZR87_RS02575at 548.111 kb on + strand, within ABZR87_RS02575at 548.111 kb on + strand, within ABZR87_RS02575at 548.111 kb on + strand, within ABZR87_RS02575at 548.111 kb on + strand, within ABZR87_RS02575at 548.111 kb on + strand, within ABZR87_RS02575at 548.111 kb on + strand, within ABZR87_RS02575at 548.112 kb on - strand, within ABZR87_RS02575at 548.112 kb on - strand, within ABZR87_RS02575at 548.112 kb on - strand, within ABZR87_RS02575at 548.112 kb on - strand, within ABZR87_RS02575at 548.112 kb on - strand, within ABZR87_RS02575at 548.112 kb on - strand, within ABZR87_RS02575at 548.112 kb on - strand, within ABZR87_RS02575at 548.150 kb on - strand, within ABZR87_RS02575at 548.211 kb on - strand, within ABZR87_RS02575at 548.211 kb on - strand, within ABZR87_RS02575at 548.217 kb on + strand, within ABZR87_RS02575at 548.217 kb on + strand, within ABZR87_RS02575at 548.217 kb on + strand, within ABZR87_RS02575at 548.217 kb on + strand, within ABZR87_RS02575at 548.217 kb on + strand, within ABZR87_RS02575at 548.218 kb on - strand, within ABZR87_RS02575at 548.219 kb on + strand, within ABZR87_RS02575at 548.220 kb on - strand, within ABZR87_RS02575at 548.220 kb on - strand, within ABZR87_RS02575at 548.363 kb on + strand, within ABZR87_RS02575at 548.363 kb on + strand, within ABZR87_RS02575at 548.364 kb on - strand, within ABZR87_RS02575at 548.372 kb on + strand, within ABZR87_RS02575at 548.372 kb on + strand, within ABZR87_RS02575at 548.373 kb on - strand, within ABZR87_RS02575at 548.373 kb on - strand, within ABZR87_RS02575at 548.373 kb on - strand, within ABZR87_RS02575at 548.501 kb on + strandat 548.870 kb on + strand, within ABZR87_RS02580at 548.870 kb on + strand, within ABZR87_RS02580at 548.870 kb on + strand, within ABZR87_RS02580at 548.871 kb on - strand, within ABZR87_RS02580at 548.871 kb on - strand, within ABZR87_RS02580at 548.871 kb on - strand, within ABZR87_RS02580at 548.948 kb on + strand, within ABZR87_RS02580at 548.949 kb on - strand, within ABZR87_RS02580at 548.949 kb on - strand, within ABZR87_RS02580at 548.949 kb on - strand, within ABZR87_RS02580at 548.949 kb on - strand, within ABZR87_RS02580at 548.955 kb on + strand, within ABZR87_RS02580at 548.955 kb on + strand, within ABZR87_RS02580at 548.955 kb on + strand, within ABZR87_RS02580at 548.955 kb on + strand, within ABZR87_RS02580at 548.956 kb on - strand, within ABZR87_RS02580at 548.956 kb on - strand, within ABZR87_RS02580at 548.956 kb on - strand, within ABZR87_RS02580at 548.956 kb on - strand, within ABZR87_RS02580at 548.998 kb on - strand, within ABZR87_RS02580at 549.096 kb on + strand, within ABZR87_RS02580at 549.097 kb on - strand, within ABZR87_RS02580at 549.097 kb on - strand, within ABZR87_RS02580at 549.129 kb on + strand, within ABZR87_RS02580at 549.129 kb on + strand, within ABZR87_RS02580at 549.130 kb on - strand, within ABZR87_RS02580at 549.130 kb on - strand, within ABZR87_RS02580at 549.150 kb on + strand, within ABZR87_RS02580at 549.150 kb on + strand, within ABZR87_RS02580at 549.150 kb on + strand, within ABZR87_RS02580at 549.150 kb on + strand, within ABZR87_RS02580at 549.150 kb on + strand, within ABZR87_RS02580at 549.150 kb on + strand, within ABZR87_RS02580at 549.150 kb on + strand, within ABZR87_RS02580at 549.150 kb on + strand, within ABZR87_RS02580at 549.150 kb on + strand, within ABZR87_RS02580at 549.151 kb on - strand, within ABZR87_RS02580at 549.151 kb on - strand, within ABZR87_RS02580at 549.151 kb on - strand, within ABZR87_RS02580at 549.209 kb on + strand, within ABZR87_RS02580at 549.209 kb on + strand, within ABZR87_RS02580at 549.209 kb on + strand, within ABZR87_RS02580at 549.210 kb on - strand, within ABZR87_RS02580at 549.210 kb on - strand, within ABZR87_RS02580at 549.210 kb on - strand, within ABZR87_RS02580at 549.210 kb on - strand, within ABZR87_RS02580at 549.210 kb on - strand, within ABZR87_RS02580at 549.249 kb on + strand, within ABZR87_RS02580at 549.270 kb on + strand, within ABZR87_RS02580at 549.271 kb on - strand, within ABZR87_RS02580at 549.271 kb on - strand, within ABZR87_RS02580at 549.271 kb on - strand, within ABZR87_RS02580at 549.391 kb on - strandat 549.391 kb on - strandat 549.434 kb on + strandat 549.434 kb on + strandat 549.434 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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546,815 + ABZR87_RS02570 0.86 -2.3
546,815 + ABZR87_RS02570 0.86 -2.7
546,815 + ABZR87_RS02570 0.86 -0.6
546,815 + ABZR87_RS02570 0.86 -4.0
546,816 - ABZR87_RS02570 0.86 -2.9
546,816 - ABZR87_RS02570 0.86 -1.2
546,816 - ABZR87_RS02570 0.86 -5.0
546,818 + ABZR87_RS02570 0.86 -1.8
546,818 + ABZR87_RS02570 0.86 -2.5
546,818 + ABZR87_RS02570 0.86 -3.6
546,818 + ABZR87_RS02570 0.86 -3.5
546,854 + ABZR87_RS02570 0.87 -3.4
546,854 + ABZR87_RS02570 0.87 -3.7
546,854 + ABZR87_RS02570 0.87 -2.4
546,854 + ABZR87_RS02570 0.87 -2.3
546,855 - ABZR87_RS02570 0.87 -3.4
546,855 - ABZR87_RS02570 0.87 -0.2
546,855 - ABZR87_RS02570 0.87 -3.9
546,855 - ABZR87_RS02570 0.87 -2.9
546,891 - ABZR87_RS02570 0.87 -3.6
546,891 - ABZR87_RS02570 0.87 -2.8
546,891 - ABZR87_RS02570 0.87 -0.6
546,891 - ABZR87_RS02570 0.87 -4.0
546,953 + ABZR87_RS02570 0.89 -2.5
546,954 - ABZR87_RS02570 0.89 -2.0
546,954 - ABZR87_RS02570 0.89 -3.4
546,954 - ABZR87_RS02570 0.89 -3.7
546,954 - ABZR87_RS02570 0.89 -2.0
546,954 - ABZR87_RS02570 0.89 -3.9
546,954 - ABZR87_RS02570 0.89 -2.7
547,165 - -1.4
547,190 + -2.4
547,368 + -1.7
547,368 + -2.0
547,368 + -2.7
547,368 + -3.1
547,430 + -4.4
547,431 - -4.3
547,504 + -2.0
547,504 + -4.6
547,504 + -2.8
547,504 + -1.5
547,504 + -2.6
547,504 + -3.1
547,504 + -1.4
547,504 + -4.7
547,505 - -2.7
547,505 - -1.9
547,505 - -0.8
547,505 - -0.1
547,505 - -1.3
547,505 - -1.7
547,505 - -0.3
547,597 - -2.9
547,600 - -1.2
547,600 - +0.4
547,601 + -2.9
547,601 + -3.7
547,601 + -1.2
547,601 + -1.7
547,602 - -0.7
547,602 - -0.6
547,602 - +1.0
547,602 - -0.7
547,602 - -1.2
547,602 - -2.7
547,602 - -0.9
547,656 + -1.1
547,657 - -1.6
547,681 + -2.9
547,681 + -2.0
547,682 - +0.1
547,684 + -3.9
547,684 + -1.5
547,685 - +1.0
547,745 + -2.8
547,909 + ABZR87_RS02575 0.23 -0.2
547,909 + ABZR87_RS02575 0.23 -3.7
547,992 - ABZR87_RS02575 0.34 +0.7
547,997 + ABZR87_RS02575 0.35 -2.2
547,997 + ABZR87_RS02575 0.35 -2.9
547,997 + ABZR87_RS02575 0.35 -3.4
547,997 + ABZR87_RS02575 0.35 -3.6
547,998 - ABZR87_RS02575 0.35 +0.2
547,998 - ABZR87_RS02575 0.35 -0.5
548,045 + ABZR87_RS02575 0.41 -4.6
548,045 + ABZR87_RS02575 0.41 -3.7
548,045 + ABZR87_RS02575 0.41 -2.2
548,045 + ABZR87_RS02575 0.41 -2.4
548,045 + ABZR87_RS02575 0.41 -2.5
548,045 + ABZR87_RS02575 0.41 -3.9
548,046 - ABZR87_RS02575 0.42 -1.1
548,046 - ABZR87_RS02575 0.42 -0.9
548,046 - ABZR87_RS02575 0.42 +0.4
548,046 - ABZR87_RS02575 0.42 +0.3
548,046 - ABZR87_RS02575 0.42 -0.2
548,046 - ABZR87_RS02575 0.42 -0.6
548,046 - ABZR87_RS02575 0.42 -0.2
548,111 + ABZR87_RS02575 0.51 -3.8
548,111 + ABZR87_RS02575 0.51 -2.4
548,111 + ABZR87_RS02575 0.51 -3.9
548,111 + ABZR87_RS02575 0.51 -3.2
548,111 + ABZR87_RS02575 0.51 -1.7
548,111 + ABZR87_RS02575 0.51 +0.1
548,111 + ABZR87_RS02575 0.51 -3.4
548,112 - ABZR87_RS02575 0.51 -0.7
548,112 - ABZR87_RS02575 0.51 -2.0
548,112 - ABZR87_RS02575 0.51 -0.3
548,112 - ABZR87_RS02575 0.51 +0.1
548,112 - ABZR87_RS02575 0.51 -0.9
548,112 - ABZR87_RS02575 0.51 -0.0
548,112 - ABZR87_RS02575 0.51 -1.2
548,150 - ABZR87_RS02575 0.56 -3.9
548,211 - ABZR87_RS02575 0.64 +0.0
548,211 - ABZR87_RS02575 0.64 -1.6
548,217 + ABZR87_RS02575 0.65 -4.3
548,217 + ABZR87_RS02575 0.65 -3.1
548,217 + ABZR87_RS02575 0.65 -5.6
548,217 + ABZR87_RS02575 0.65 -3.5
548,217 + ABZR87_RS02575 0.65 -2.9
548,218 - ABZR87_RS02575 0.65 -0.4
548,219 + ABZR87_RS02575 0.65 -3.3
548,220 - ABZR87_RS02575 0.66 -1.2
548,220 - ABZR87_RS02575 0.66 -0.8
548,363 + ABZR87_RS02575 0.85 -4.8
548,363 + ABZR87_RS02575 0.85 -3.0
548,364 - ABZR87_RS02575 0.85 -1.1
548,372 + ABZR87_RS02575 0.87 -3.7
548,372 + ABZR87_RS02575 0.87 -2.9
548,373 - ABZR87_RS02575 0.87 -1.5
548,373 - ABZR87_RS02575 0.87 -0.2
548,373 - ABZR87_RS02575 0.87 -1.7
548,501 + +0.4
548,870 + ABZR87_RS02580 0.23 +0.6
548,870 + ABZR87_RS02580 0.23 +0.5
548,870 + ABZR87_RS02580 0.23 +1.4
548,871 - ABZR87_RS02580 0.23 -0.4
548,871 - ABZR87_RS02580 0.23 +0.2
548,871 - ABZR87_RS02580 0.23 -0.7
548,948 + ABZR87_RS02580 0.34 -0.6
548,949 - ABZR87_RS02580 0.34 -0.4
548,949 - ABZR87_RS02580 0.34 +0.1
548,949 - ABZR87_RS02580 0.34 -0.1
548,949 - ABZR87_RS02580 0.34 -0.3
548,955 + ABZR87_RS02580 0.35 -0.2
548,955 + ABZR87_RS02580 0.35 +0.2
548,955 + ABZR87_RS02580 0.35 +0.7
548,955 + ABZR87_RS02580 0.35 -0.2
548,956 - ABZR87_RS02580 0.35 +0.3
548,956 - ABZR87_RS02580 0.35 -0.3
548,956 - ABZR87_RS02580 0.35 -0.2
548,956 - ABZR87_RS02580 0.35 +0.4
548,998 - ABZR87_RS02580 0.41 -0.3
549,096 + ABZR87_RS02580 0.56 -0.7
549,097 - ABZR87_RS02580 0.56 -0.5
549,097 - ABZR87_RS02580 0.56 +0.2
549,129 + ABZR87_RS02580 0.61 +0.7
549,129 + ABZR87_RS02580 0.61 +1.2
549,130 - ABZR87_RS02580 0.61 -0.1
549,130 - ABZR87_RS02580 0.61 +0.4
549,150 + ABZR87_RS02580 0.64 -0.1
549,150 + ABZR87_RS02580 0.64 +2.0
549,150 + ABZR87_RS02580 0.64 -0.1
549,150 + ABZR87_RS02580 0.64 -0.3
549,150 + ABZR87_RS02580 0.64 -0.4
549,150 + ABZR87_RS02580 0.64 +0.7
549,150 + ABZR87_RS02580 0.64 -1.5
549,150 + ABZR87_RS02580 0.64 -1.3
549,150 + ABZR87_RS02580 0.64 -0.7
549,151 - ABZR87_RS02580 0.64 -0.2
549,151 - ABZR87_RS02580 0.64 +0.4
549,151 - ABZR87_RS02580 0.64 -0.4
549,209 + ABZR87_RS02580 0.73 -0.6
549,209 + ABZR87_RS02580 0.73 +1.6
549,209 + ABZR87_RS02580 0.73 +1.0
549,210 - ABZR87_RS02580 0.73 +0.1
549,210 - ABZR87_RS02580 0.73 +0.5
549,210 - ABZR87_RS02580 0.73 +0.1
549,210 - ABZR87_RS02580 0.73 -0.2
549,210 - ABZR87_RS02580 0.73 +0.0
549,249 + ABZR87_RS02580 0.79 +0.3
549,270 + ABZR87_RS02580 0.82 +0.0
549,271 - ABZR87_RS02580 0.82 +0.6
549,271 - ABZR87_RS02580 0.82 -1.2
549,271 - ABZR87_RS02580 0.82 -0.7
549,391 - +0.3
549,391 - -0.5
549,434 + +0.4
549,434 + +0.7
549,434 + -0.6

Or see this region's nucleotide sequence