Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS21255 and HSERO_RS21260 are separated by 277 nucleotides HSERO_RS21260 and HSERO_RS21265 are separated by 418 nucleotides
HSERO_RS21255: HSERO_RS21255 - hypothetical protein, at 4,866,319 to 4,866,864
_RS21255
HSERO_RS21260: HSERO_RS21260 - adenosine deaminase, at 4,867,142 to 4,868,200
_RS21260
HSERO_RS21265: HSERO_RS21265 - transcriptional regulator, at 4,868,619 to 4,869,356
_RS21265
Position (kb) 4867
4868
4869 Strain fitness (log2 ratio) -2
-1
0
1 at 4866.236 kb on + strand at 4866.339 kb on + strand at 4866.371 kb on - strand at 4866.374 kb on + strand, within HSERO_RS21255 at 4866.374 kb on + strand, within HSERO_RS21255 at 4866.374 kb on + strand, within HSERO_RS21255 at 4866.374 kb on + strand, within HSERO_RS21255 at 4866.374 kb on + strand, within HSERO_RS21255 at 4866.374 kb on + strand, within HSERO_RS21255 at 4866.374 kb on + strand, within HSERO_RS21255 at 4866.374 kb on + strand, within HSERO_RS21255 at 4866.382 kb on - strand, within HSERO_RS21255 at 4866.382 kb on - strand, within HSERO_RS21255 at 4866.582 kb on + strand, within HSERO_RS21255 at 4866.748 kb on - strand, within HSERO_RS21255 at 4866.776 kb on + strand, within HSERO_RS21255 at 4866.977 kb on + strand at 4867.105 kb on + strand at 4867.118 kb on + strand at 4867.207 kb on + strand at 4867.294 kb on + strand, within HSERO_RS21260 at 4867.294 kb on + strand, within HSERO_RS21260 at 4867.302 kb on - strand, within HSERO_RS21260 at 4867.313 kb on + strand, within HSERO_RS21260 at 4867.333 kb on - strand at 4867.371 kb on - strand, within HSERO_RS21260 at 4867.485 kb on + strand, within HSERO_RS21260 at 4867.538 kb on + strand, within HSERO_RS21260 at 4867.590 kb on - strand, within HSERO_RS21260 at 4867.693 kb on - strand, within HSERO_RS21260 at 4867.758 kb on + strand, within HSERO_RS21260 at 4867.824 kb on - strand, within HSERO_RS21260 at 4867.908 kb on - strand, within HSERO_RS21260 at 4867.989 kb on + strand, within HSERO_RS21260 at 4868.180 kb on - strand at 4868.194 kb on + strand at 4868.218 kb on - strand at 4868.570 kb on + strand at 4868.608 kb on + strand at 4868.681 kb on + strand at 4868.720 kb on + strand, within HSERO_RS21265 at 4868.773 kb on + strand, within HSERO_RS21265 at 4868.812 kb on - strand, within HSERO_RS21265 at 4868.959 kb on - strand, within HSERO_RS21265 at 4869.141 kb on - strand, within HSERO_RS21265
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 4,866,236 + +0.6 4,866,339 + -0.3 4,866,371 - +0.1 4,866,374 + HSERO_RS21255 0.10 -2.4 4,866,374 + HSERO_RS21255 0.10 -0.2 4,866,374 + HSERO_RS21255 0.10 +0.5 4,866,374 + HSERO_RS21255 0.10 -2.0 4,866,374 + HSERO_RS21255 0.10 -0.8 4,866,374 + HSERO_RS21255 0.10 +0.1 4,866,374 + HSERO_RS21255 0.10 -1.5 4,866,374 + HSERO_RS21255 0.10 -0.2 4,866,382 - HSERO_RS21255 0.12 -0.4 4,866,382 - HSERO_RS21255 0.12 +0.6 4,866,582 + HSERO_RS21255 0.48 -2.6 4,866,748 - HSERO_RS21255 0.79 +0.5 4,866,776 + HSERO_RS21255 0.84 -1.2 4,866,977 + +0.1 4,867,105 + +0.8 4,867,118 + -0.4 4,867,207 + -0.9 4,867,294 + HSERO_RS21260 0.14 +1.2 4,867,294 + HSERO_RS21260 0.14 +0.8 4,867,302 - HSERO_RS21260 0.15 -0.7 4,867,313 + HSERO_RS21260 0.16 -0.2 4,867,333 - +1.0 4,867,371 - HSERO_RS21260 0.22 +0.1 4,867,485 + HSERO_RS21260 0.32 +0.1 4,867,538 + HSERO_RS21260 0.37 +0.9 4,867,590 - HSERO_RS21260 0.42 +1.1 4,867,693 - HSERO_RS21260 0.52 +0.2 4,867,758 + HSERO_RS21260 0.58 +0.4 4,867,824 - HSERO_RS21260 0.64 +0.8 4,867,908 - HSERO_RS21260 0.72 -0.8 4,867,989 + HSERO_RS21260 0.80 +1.7 4,868,180 - +1.6 4,868,194 + -0.5 4,868,218 - -0.2 4,868,570 + -0.2 4,868,608 + -0.6 4,868,681 + +1.4 4,868,720 + HSERO_RS21265 0.14 -1.1 4,868,773 + HSERO_RS21265 0.21 -0.5 4,868,812 - HSERO_RS21265 0.26 -0.7 4,868,959 - HSERO_RS21265 0.46 +0.3 4,869,141 - HSERO_RS21265 0.71 -0.4
Or see this region's nucleotide sequence