Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS19810

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS19805 and HSERO_RS19810 are separated by 217 nucleotidesHSERO_RS19810 and HSERO_RS19815 are separated by 171 nucleotidesHSERO_RS19815 and HSERO_RS19820 overlap by 73 nucleotides HSERO_RS19805: HSERO_RS19805 - glycosyl transferase, at 4,544,423 to 4,546,177 _RS19805 HSERO_RS19810: HSERO_RS19810 - excinuclease ABC subunit A, at 4,546,395 to 4,549,253 _RS19810 HSERO_RS19815: HSERO_RS19815 - phytanoyl-CoA dioxygenase, at 4,549,425 to 4,550,192 _RS19815 HSERO_RS19820: HSERO_RS19820 - methyl-accepting chemotaxis protein, at 4,550,120 to 4,551,790 _RS19820 Position (kb) 4546 4547 4548 4549 4550Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 4546.016 kb on + strandat 4546.206 kb on - strandat 4546.301 kb on + strandat 4546.309 kb on - strandat 4546.333 kb on + strandat 4546.434 kb on - strandat 4546.434 kb on - strandat 4546.756 kb on - strand, within HSERO_RS19810at 4546.994 kb on - strand, within HSERO_RS19810at 4547.008 kb on + strand, within HSERO_RS19810at 4547.027 kb on - strand, within HSERO_RS19810at 4547.036 kb on + strand, within HSERO_RS19810at 4547.072 kb on - strand, within HSERO_RS19810at 4547.390 kb on - strand, within HSERO_RS19810at 4547.400 kb on - strand, within HSERO_RS19810at 4547.595 kb on - strand, within HSERO_RS19810at 4547.665 kb on + strand, within HSERO_RS19810at 4547.760 kb on - strand, within HSERO_RS19810at 4547.770 kb on - strandat 4547.851 kb on - strand, within HSERO_RS19810at 4547.928 kb on + strand, within HSERO_RS19810at 4547.973 kb on - strand, within HSERO_RS19810at 4548.208 kb on + strand, within HSERO_RS19810at 4548.292 kb on - strand, within HSERO_RS19810at 4548.306 kb on - strand, within HSERO_RS19810at 4548.326 kb on - strand, within HSERO_RS19810at 4548.326 kb on - strand, within HSERO_RS19810at 4548.363 kb on - strandat 4548.370 kb on + strand, within HSERO_RS19810at 4548.370 kb on + strand, within HSERO_RS19810at 4548.386 kb on + strand, within HSERO_RS19810at 4548.482 kb on - strand, within HSERO_RS19810at 4548.483 kb on - strand, within HSERO_RS19810at 4548.723 kb on + strand, within HSERO_RS19810at 4548.724 kb on - strand, within HSERO_RS19810at 4548.747 kb on + strand, within HSERO_RS19810at 4548.758 kb on + strand, within HSERO_RS19810at 4548.880 kb on + strand, within HSERO_RS19810at 4548.950 kb on - strand, within HSERO_RS19810at 4548.955 kb on - strand, within HSERO_RS19810at 4549.023 kb on - strandat 4549.036 kb on - strandat 4549.058 kb on + strandat 4549.292 kb on + strandat 4549.339 kb on + strandat 4549.484 kb on + strandat 4549.616 kb on + strand, within HSERO_RS19815at 4549.811 kb on - strand, within HSERO_RS19815at 4549.932 kb on - strand, within HSERO_RS19815at 4550.035 kb on + strand, within HSERO_RS19815at 4550.053 kb on - strand, within HSERO_RS19815at 4550.093 kb on + strand, within HSERO_RS19815at 4550.101 kb on - strand, within HSERO_RS19815at 4550.181 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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4,546,016 + -1.5
4,546,206 - -0.9
4,546,301 + -1.8
4,546,309 - -0.5
4,546,333 + -0.5
4,546,434 - -1.8
4,546,434 - -0.1
4,546,756 - HSERO_RS19810 0.13 -0.4
4,546,994 - HSERO_RS19810 0.21 -0.2
4,547,008 + HSERO_RS19810 0.21 -0.5
4,547,027 - HSERO_RS19810 0.22 -0.6
4,547,036 + HSERO_RS19810 0.22 -0.6
4,547,072 - HSERO_RS19810 0.24 -0.1
4,547,390 - HSERO_RS19810 0.35 -0.1
4,547,400 - HSERO_RS19810 0.35 -2.1
4,547,595 - HSERO_RS19810 0.42 -0.7
4,547,665 + HSERO_RS19810 0.44 +0.1
4,547,760 - HSERO_RS19810 0.48 -0.8
4,547,770 - +4.9
4,547,851 - HSERO_RS19810 0.51 +0.5
4,547,928 + HSERO_RS19810 0.54 -0.4
4,547,973 - HSERO_RS19810 0.55 +2.9
4,548,208 + HSERO_RS19810 0.63 -0.8
4,548,292 - HSERO_RS19810 0.66 -0.1
4,548,306 - HSERO_RS19810 0.67 -0.7
4,548,326 - HSERO_RS19810 0.68 +0.4
4,548,326 - HSERO_RS19810 0.68 +0.9
4,548,363 - -0.3
4,548,370 + HSERO_RS19810 0.69 -2.0
4,548,370 + HSERO_RS19810 0.69 +0.1
4,548,386 + HSERO_RS19810 0.70 +0.8
4,548,482 - HSERO_RS19810 0.73 -1.9
4,548,483 - HSERO_RS19810 0.73 -1.4
4,548,723 + HSERO_RS19810 0.81 -3.3
4,548,724 - HSERO_RS19810 0.81 -0.4
4,548,747 + HSERO_RS19810 0.82 -1.3
4,548,758 + HSERO_RS19810 0.83 -1.0
4,548,880 + HSERO_RS19810 0.87 -0.0
4,548,950 - HSERO_RS19810 0.89 -0.4
4,548,955 - HSERO_RS19810 0.90 -1.3
4,549,023 - -0.7
4,549,036 - -0.4
4,549,058 + -2.0
4,549,292 + +0.7
4,549,339 + +0.0
4,549,484 + -0.8
4,549,616 + HSERO_RS19815 0.25 +0.8
4,549,811 - HSERO_RS19815 0.50 -0.5
4,549,932 - HSERO_RS19815 0.66 -0.3
4,550,035 + HSERO_RS19815 0.79 -1.0
4,550,053 - HSERO_RS19815 0.82 +0.1
4,550,093 + HSERO_RS19815 0.87 +1.4
4,550,101 - HSERO_RS19815 0.88 +0.2
4,550,181 + -2.7

Or see this region's nucleotide sequence