Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02695 and HSERO_RS02700 are separated by 122 nucleotides HSERO_RS02700 and HSERO_RS02705 are separated by 49 nucleotides HSERO_RS02705 and HSERO_RS02710 are separated by 28 nucleotides
HSERO_RS02695: HSERO_RS02695 - major facilitator transporter, at 595,990 to 597,342
_RS02695
HSERO_RS02700: HSERO_RS02700 - hypothetical protein, at 597,465 to 597,680
_RS02700
HSERO_RS02705: HSERO_RS02705 - FAD-dependent oxidoreductase, at 597,730 to 599,499
_RS02705
HSERO_RS02710: HSERO_RS02710 - Zn-dependent hydrolase, at 599,528 to 600,487
_RS02710
Position (kb) 597
598
599
600 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 597.089 kb on + strand, within HSERO_RS02695 at 597.159 kb on + strand, within HSERO_RS02695 at 597.202 kb on + strand, within HSERO_RS02695 at 597.204 kb on + strand, within HSERO_RS02695 at 597.283 kb on - strand at 597.310 kb on - strand at 597.376 kb on + strand at 597.530 kb on - strand, within HSERO_RS02700 at 597.664 kb on - strand at 597.667 kb on + strand at 597.675 kb on - strand at 597.711 kb on + strand at 597.719 kb on - strand at 597.722 kb on + strand at 597.730 kb on - strand at 598.241 kb on + strand, within HSERO_RS02705 at 598.626 kb on - strand, within HSERO_RS02705 at 598.779 kb on - strand, within HSERO_RS02705 at 598.883 kb on - strand, within HSERO_RS02705 at 599.100 kb on - strand, within HSERO_RS02705 at 599.172 kb on - strand, within HSERO_RS02705 at 599.193 kb on - strand, within HSERO_RS02705 at 599.224 kb on - strand, within HSERO_RS02705 at 599.282 kb on - strand, within HSERO_RS02705 at 599.595 kb on + strand at 599.618 kb on + strand at 599.818 kb on + strand, within HSERO_RS02710 at 599.863 kb on + strand at 599.893 kb on + strand, within HSERO_RS02710 at 599.987 kb on + strand, within HSERO_RS02710 at 599.997 kb on + strand, within HSERO_RS02710 at 600.002 kb on + strand, within HSERO_RS02710 at 600.074 kb on + strand, within HSERO_RS02710 at 600.082 kb on - strand, within HSERO_RS02710 at 600.311 kb on + strand, within HSERO_RS02710 at 600.319 kb on - strand, within HSERO_RS02710 at 600.357 kb on - strand, within HSERO_RS02710 at 600.443 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 597,089 + HSERO_RS02695 0.81 -0.2 597,159 + HSERO_RS02695 0.86 +0.4 597,202 + HSERO_RS02695 0.90 +0.3 597,204 + HSERO_RS02695 0.90 +0.6 597,283 - -0.7 597,310 - -0.2 597,376 + +1.3 597,530 - HSERO_RS02700 0.30 +0.1 597,664 - +0.7 597,667 + +2.7 597,675 - +0.2 597,711 + -0.5 597,719 - +0.2 597,722 + +0.1 597,730 - +0.4 598,241 + HSERO_RS02705 0.29 +0.7 598,626 - HSERO_RS02705 0.51 -1.5 598,779 - HSERO_RS02705 0.59 +0.5 598,883 - HSERO_RS02705 0.65 +1.2 599,100 - HSERO_RS02705 0.77 +0.8 599,172 - HSERO_RS02705 0.81 -1.1 599,193 - HSERO_RS02705 0.83 +0.8 599,224 - HSERO_RS02705 0.84 -0.0 599,282 - HSERO_RS02705 0.88 +4.5 599,595 + -0.0 599,618 + +0.3 599,818 + HSERO_RS02710 0.30 +0.3 599,863 + -0.1 599,893 + HSERO_RS02710 0.38 -0.2 599,987 + HSERO_RS02710 0.48 +1.5 599,997 + HSERO_RS02710 0.49 -0.7 600,002 + HSERO_RS02710 0.49 +1.3 600,074 + HSERO_RS02710 0.57 +0.3 600,082 - HSERO_RS02710 0.58 -0.6 600,311 + HSERO_RS02710 0.82 +0.4 600,319 - HSERO_RS02710 0.82 +0.4 600,357 - HSERO_RS02710 0.86 +0.6 600,443 - +0.6
Or see this region's nucleotide sequence