Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS23460

Experiment: Lauric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS23455 and ABZR87_RS23460 are separated by 387 nucleotidesABZR87_RS23460 and ABZR87_RS23465 are separated by 11 nucleotidesABZR87_RS23465 and ABZR87_RS23470 overlap by 4 nucleotides ABZR87_RS23455: ABZR87_RS23455 - biotin-independent malonate decarboxylase subunit gamma, at 1,625,715 to 1,626,545 _RS23455 ABZR87_RS23460: ABZR87_RS23460 - malonate transporter subunit MadL, at 1,626,933 to 1,627,340 _RS23460 ABZR87_RS23465: ABZR87_RS23465 - malonate transporter subunit MadM, at 1,627,352 to 1,628,116 _RS23465 ABZR87_RS23470: ABZR87_RS23470 - malonate decarboxylase holo-ACP synthase, at 1,628,113 to 1,628,748 _RS23470 Position (kb) 1626 1627 1628Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1626.019 kb on - strand, within ABZR87_RS23455at 1626.019 kb on - strand, within ABZR87_RS23455at 1626.019 kb on - strand, within ABZR87_RS23455at 1626.040 kb on - strand, within ABZR87_RS23455at 1626.079 kb on - strand, within ABZR87_RS23455at 1626.241 kb on + strand, within ABZR87_RS23455at 1626.300 kb on + strand, within ABZR87_RS23455at 1626.300 kb on + strand, within ABZR87_RS23455at 1626.300 kb on + strand, within ABZR87_RS23455at 1626.301 kb on - strand, within ABZR87_RS23455at 1626.301 kb on - strand, within ABZR87_RS23455at 1626.543 kb on + strandat 1626.543 kb on + strandat 1626.543 kb on + strandat 1626.550 kb on + strandat 1626.598 kb on + strandat 1626.608 kb on - strandat 1626.608 kb on - strandat 1626.745 kb on - strandat 1626.745 kb on - strandat 1626.745 kb on - strandat 1626.770 kb on + strandat 1626.770 kb on + strandat 1626.942 kb on + strandat 1626.942 kb on + strandat 1626.942 kb on + strandat 1626.943 kb on - strandat 1626.943 kb on - strandat 1626.943 kb on - strandat 1626.943 kb on - strandat 1626.947 kb on + strandat 1626.947 kb on + strandat 1626.947 kb on + strandat 1626.948 kb on - strandat 1626.948 kb on - strandat 1626.948 kb on - strandat 1626.948 kb on - strandat 1626.971 kb on + strandat 1626.971 kb on + strandat 1626.971 kb on + strandat 1627.078 kb on - strand, within ABZR87_RS23460at 1627.143 kb on + strand, within ABZR87_RS23460at 1627.143 kb on + strand, within ABZR87_RS23460at 1627.143 kb on + strand, within ABZR87_RS23460at 1627.143 kb on + strand, within ABZR87_RS23460at 1627.143 kb on + strand, within ABZR87_RS23460at 1627.143 kb on + strand, within ABZR87_RS23460at 1627.143 kb on + strand, within ABZR87_RS23460at 1627.144 kb on - strand, within ABZR87_RS23460at 1627.144 kb on - strand, within ABZR87_RS23460at 1627.144 kb on - strand, within ABZR87_RS23460at 1627.144 kb on - strand, within ABZR87_RS23460at 1627.144 kb on - strand, within ABZR87_RS23460at 1627.339 kb on - strandat 1627.365 kb on + strandat 1627.365 kb on + strandat 1627.365 kb on + strandat 1627.366 kb on - strandat 1627.506 kb on + strand, within ABZR87_RS23465at 1627.507 kb on - strand, within ABZR87_RS23465at 1627.793 kb on + strand, within ABZR87_RS23465at 1627.793 kb on + strand, within ABZR87_RS23465at 1627.793 kb on + strand, within ABZR87_RS23465at 1627.793 kb on + strand, within ABZR87_RS23465at 1627.794 kb on - strand, within ABZR87_RS23465at 1627.794 kb on - strand, within ABZR87_RS23465at 1627.794 kb on - strand, within ABZR87_RS23465at 1627.794 kb on - strand, within ABZR87_RS23465at 1628.077 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lauric (C)
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1,626,019 - ABZR87_RS23455 0.37 +0.1
1,626,019 - ABZR87_RS23455 0.37 +0.1
1,626,019 - ABZR87_RS23455 0.37 -0.3
1,626,040 - ABZR87_RS23455 0.39 -0.7
1,626,079 - ABZR87_RS23455 0.44 -0.8
1,626,241 + ABZR87_RS23455 0.63 -2.1
1,626,300 + ABZR87_RS23455 0.70 +0.5
1,626,300 + ABZR87_RS23455 0.70 -1.8
1,626,300 + ABZR87_RS23455 0.70 -1.6
1,626,301 - ABZR87_RS23455 0.71 -0.6
1,626,301 - ABZR87_RS23455 0.71 -0.5
1,626,543 + -1.1
1,626,543 + -0.1
1,626,543 + +0.5
1,626,550 + -0.4
1,626,598 + +1.7
1,626,608 - -0.8
1,626,608 - -1.2
1,626,745 - -0.6
1,626,745 - -2.1
1,626,745 - -1.6
1,626,770 + +1.8
1,626,770 + +0.2
1,626,942 + -2.2
1,626,942 + -0.5
1,626,942 + -0.9
1,626,943 - -0.5
1,626,943 - -1.6
1,626,943 - -2.0
1,626,943 - +0.1
1,626,947 + -2.9
1,626,947 + -1.5
1,626,947 + -0.9
1,626,948 - +0.5
1,626,948 - -3.1
1,626,948 - -1.2
1,626,948 - -0.6
1,626,971 + -1.1
1,626,971 + +0.4
1,626,971 + +0.7
1,627,078 - ABZR87_RS23460 0.36 -1.6
1,627,143 + ABZR87_RS23460 0.51 -0.8
1,627,143 + ABZR87_RS23460 0.51 -2.5
1,627,143 + ABZR87_RS23460 0.51 +0.3
1,627,143 + ABZR87_RS23460 0.51 -0.2
1,627,143 + ABZR87_RS23460 0.51 -0.8
1,627,143 + ABZR87_RS23460 0.51 -0.8
1,627,143 + ABZR87_RS23460 0.51 -0.6
1,627,144 - ABZR87_RS23460 0.52 -0.3
1,627,144 - ABZR87_RS23460 0.52 -0.7
1,627,144 - ABZR87_RS23460 0.52 -1.1
1,627,144 - ABZR87_RS23460 0.52 +0.0
1,627,144 - ABZR87_RS23460 0.52 -1.6
1,627,339 - -0.4
1,627,365 + -1.3
1,627,365 + -0.1
1,627,365 + -1.9
1,627,366 - -0.8
1,627,506 + ABZR87_RS23465 0.20 -2.1
1,627,507 - ABZR87_RS23465 0.20 -2.0
1,627,793 + ABZR87_RS23465 0.58 -0.5
1,627,793 + ABZR87_RS23465 0.58 -1.5
1,627,793 + ABZR87_RS23465 0.58 -1.5
1,627,793 + ABZR87_RS23465 0.58 -0.9
1,627,794 - ABZR87_RS23465 0.58 -1.1
1,627,794 - ABZR87_RS23465 0.58 -0.5
1,627,794 - ABZR87_RS23465 0.58 -1.0
1,627,794 - ABZR87_RS23465 0.58 -0.8
1,628,077 + -0.1

Or see this region's nucleotide sequence