Experiment: Lauric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS23455 and ABZR87_RS23460 are separated by 387 nucleotides ABZR87_RS23460 and ABZR87_RS23465 are separated by 11 nucleotides ABZR87_RS23465 and ABZR87_RS23470 overlap by 4 nucleotides
ABZR87_RS23455: ABZR87_RS23455 - biotin-independent malonate decarboxylase subunit gamma, at 1,625,715 to 1,626,545
_RS23455
ABZR87_RS23460: ABZR87_RS23460 - malonate transporter subunit MadL, at 1,626,933 to 1,627,340
_RS23460
ABZR87_RS23465: ABZR87_RS23465 - malonate transporter subunit MadM, at 1,627,352 to 1,628,116
_RS23465
ABZR87_RS23470: ABZR87_RS23470 - malonate decarboxylase holo-ACP synthase, at 1,628,113 to 1,628,748
_RS23470
Position (kb)
1626
1627
1628 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1626.019 kb on - strand, within ABZR87_RS23455 at 1626.019 kb on - strand, within ABZR87_RS23455 at 1626.019 kb on - strand, within ABZR87_RS23455 at 1626.040 kb on - strand, within ABZR87_RS23455 at 1626.079 kb on - strand, within ABZR87_RS23455 at 1626.241 kb on + strand, within ABZR87_RS23455 at 1626.300 kb on + strand, within ABZR87_RS23455 at 1626.300 kb on + strand, within ABZR87_RS23455 at 1626.300 kb on + strand, within ABZR87_RS23455 at 1626.301 kb on - strand, within ABZR87_RS23455 at 1626.301 kb on - strand, within ABZR87_RS23455 at 1626.543 kb on + strand at 1626.543 kb on + strand at 1626.543 kb on + strand at 1626.550 kb on + strand at 1626.598 kb on + strand at 1626.608 kb on - strand at 1626.608 kb on - strand at 1626.745 kb on - strand at 1626.745 kb on - strand at 1626.745 kb on - strand at 1626.770 kb on + strand at 1626.770 kb on + strand at 1626.942 kb on + strand at 1626.942 kb on + strand at 1626.942 kb on + strand at 1626.943 kb on - strand at 1626.943 kb on - strand at 1626.943 kb on - strand at 1626.943 kb on - strand at 1626.947 kb on + strand at 1626.947 kb on + strand at 1626.947 kb on + strand at 1626.948 kb on - strand at 1626.948 kb on - strand at 1626.948 kb on - strand at 1626.948 kb on - strand at 1626.971 kb on + strand at 1626.971 kb on + strand at 1626.971 kb on + strand at 1627.078 kb on - strand, within ABZR87_RS23460 at 1627.143 kb on + strand, within ABZR87_RS23460 at 1627.143 kb on + strand, within ABZR87_RS23460 at 1627.143 kb on + strand, within ABZR87_RS23460 at 1627.143 kb on + strand, within ABZR87_RS23460 at 1627.143 kb on + strand, within ABZR87_RS23460 at 1627.143 kb on + strand, within ABZR87_RS23460 at 1627.143 kb on + strand, within ABZR87_RS23460 at 1627.144 kb on - strand, within ABZR87_RS23460 at 1627.144 kb on - strand, within ABZR87_RS23460 at 1627.144 kb on - strand, within ABZR87_RS23460 at 1627.144 kb on - strand, within ABZR87_RS23460 at 1627.144 kb on - strand, within ABZR87_RS23460 at 1627.339 kb on - strand at 1627.365 kb on + strand at 1627.365 kb on + strand at 1627.365 kb on + strand at 1627.366 kb on - strand at 1627.506 kb on + strand, within ABZR87_RS23465 at 1627.507 kb on - strand, within ABZR87_RS23465 at 1627.793 kb on + strand, within ABZR87_RS23465 at 1627.793 kb on + strand, within ABZR87_RS23465 at 1627.793 kb on + strand, within ABZR87_RS23465 at 1627.793 kb on + strand, within ABZR87_RS23465 at 1627.794 kb on - strand, within ABZR87_RS23465 at 1627.794 kb on - strand, within ABZR87_RS23465 at 1627.794 kb on - strand, within ABZR87_RS23465 at 1627.794 kb on - strand, within ABZR87_RS23465 at 1628.077 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lauric (C) remove 1,626,019 - ABZR87_RS23455 0.37 +0.1 1,626,019 - ABZR87_RS23455 0.37 +0.1 1,626,019 - ABZR87_RS23455 0.37 -0.3 1,626,040 - ABZR87_RS23455 0.39 -0.7 1,626,079 - ABZR87_RS23455 0.44 -0.8 1,626,241 + ABZR87_RS23455 0.63 -2.1 1,626,300 + ABZR87_RS23455 0.70 +0.5 1,626,300 + ABZR87_RS23455 0.70 -1.8 1,626,300 + ABZR87_RS23455 0.70 -1.6 1,626,301 - ABZR87_RS23455 0.71 -0.6 1,626,301 - ABZR87_RS23455 0.71 -0.5 1,626,543 + -1.1 1,626,543 + -0.1 1,626,543 + +0.5 1,626,550 + -0.4 1,626,598 + +1.7 1,626,608 - -0.8 1,626,608 - -1.2 1,626,745 - -0.6 1,626,745 - -2.1 1,626,745 - -1.6 1,626,770 + +1.8 1,626,770 + +0.2 1,626,942 + -2.2 1,626,942 + -0.5 1,626,942 + -0.9 1,626,943 - -0.5 1,626,943 - -1.6 1,626,943 - -2.0 1,626,943 - +0.1 1,626,947 + -2.9 1,626,947 + -1.5 1,626,947 + -0.9 1,626,948 - +0.5 1,626,948 - -3.1 1,626,948 - -1.2 1,626,948 - -0.6 1,626,971 + -1.1 1,626,971 + +0.4 1,626,971 + +0.7 1,627,078 - ABZR87_RS23460 0.36 -1.6 1,627,143 + ABZR87_RS23460 0.51 -0.8 1,627,143 + ABZR87_RS23460 0.51 -2.5 1,627,143 + ABZR87_RS23460 0.51 +0.3 1,627,143 + ABZR87_RS23460 0.51 -0.2 1,627,143 + ABZR87_RS23460 0.51 -0.8 1,627,143 + ABZR87_RS23460 0.51 -0.8 1,627,143 + ABZR87_RS23460 0.51 -0.6 1,627,144 - ABZR87_RS23460 0.52 -0.3 1,627,144 - ABZR87_RS23460 0.52 -0.7 1,627,144 - ABZR87_RS23460 0.52 -1.1 1,627,144 - ABZR87_RS23460 0.52 +0.0 1,627,144 - ABZR87_RS23460 0.52 -1.6 1,627,339 - -0.4 1,627,365 + -1.3 1,627,365 + -0.1 1,627,365 + -1.9 1,627,366 - -0.8 1,627,506 + ABZR87_RS23465 0.20 -2.1 1,627,507 - ABZR87_RS23465 0.20 -2.0 1,627,793 + ABZR87_RS23465 0.58 -0.5 1,627,793 + ABZR87_RS23465 0.58 -1.5 1,627,793 + ABZR87_RS23465 0.58 -1.5 1,627,793 + ABZR87_RS23465 0.58 -0.9 1,627,794 - ABZR87_RS23465 0.58 -1.1 1,627,794 - ABZR87_RS23465 0.58 -0.5 1,627,794 - ABZR87_RS23465 0.58 -1.0 1,627,794 - ABZR87_RS23465 0.58 -0.8 1,628,077 + -0.1
Or see this region's nucleotide sequence