Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS23440

Experiment: Lauric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS23435 and ABZR87_RS23440 overlap by 1 nucleotidesABZR87_RS23440 and ABZR87_RS23445 overlap by 14 nucleotidesABZR87_RS23445 and ABZR87_RS23450 are separated by 9 nucleotides ABZR87_RS23435: ABZR87_RS23435 - malonate decarboxylase subunit alpha, at 1,621,954 to 1,623,642 _RS23435 ABZR87_RS23440: ABZR87_RS23440 - triphosphoribosyl-dephospho-CoA synthase, at 1,623,642 to 1,624,571 _RS23440 ABZR87_RS23445: ABZR87_RS23445 - malonate decarboxylase subunit delta, at 1,624,558 to 1,624,863 _RS23445 ABZR87_RS23450: ABZR87_RS23450 - biotin-independent malonate decarboxylase subunit beta, at 1,624,873 to 1,625,718 _RS23450 Position (kb) 1623 1624 1625Strain fitness (log2 ratio) -3 -2 -1 0 1at 1622.725 kb on + strand, within ABZR87_RS23435at 1622.725 kb on + strand, within ABZR87_RS23435at 1622.726 kb on - strand, within ABZR87_RS23435at 1622.803 kb on + strand, within ABZR87_RS23435at 1622.941 kb on + strand, within ABZR87_RS23435at 1622.942 kb on - strand, within ABZR87_RS23435at 1623.028 kb on + strand, within ABZR87_RS23435at 1623.029 kb on - strand, within ABZR87_RS23435at 1623.230 kb on + strand, within ABZR87_RS23435at 1623.230 kb on + strand, within ABZR87_RS23435at 1623.230 kb on + strand, within ABZR87_RS23435at 1623.230 kb on + strand, within ABZR87_RS23435at 1623.340 kb on + strand, within ABZR87_RS23435at 1623.341 kb on - strand, within ABZR87_RS23435at 1623.341 kb on - strand, within ABZR87_RS23435at 1623.385 kb on + strand, within ABZR87_RS23435at 1623.386 kb on - strand, within ABZR87_RS23435at 1623.386 kb on - strand, within ABZR87_RS23435at 1623.391 kb on + strand, within ABZR87_RS23435at 1623.391 kb on + strand, within ABZR87_RS23435at 1623.392 kb on - strand, within ABZR87_RS23435at 1623.392 kb on - strand, within ABZR87_RS23435at 1623.610 kb on + strandat 1623.680 kb on + strandat 1623.680 kb on + strandat 1623.681 kb on - strandat 1624.043 kb on - strand, within ABZR87_RS23440at 1624.147 kb on - strand, within ABZR87_RS23440at 1624.612 kb on + strand, within ABZR87_RS23445at 1624.612 kb on + strand, within ABZR87_RS23445at 1624.613 kb on - strand, within ABZR87_RS23445at 1624.861 kb on + strandat 1624.862 kb on - strandat 1625.022 kb on + strand, within ABZR87_RS23450at 1625.380 kb on + strand, within ABZR87_RS23450at 1625.380 kb on + strand, within ABZR87_RS23450at 1625.380 kb on + strand, within ABZR87_RS23450at 1625.458 kb on + strand, within ABZR87_RS23450at 1625.458 kb on + strand, within ABZR87_RS23450at 1625.459 kb on - strand, within ABZR87_RS23450

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Per-strain Table

Position Strand Gene LocusTag Fraction Lauric (C)
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1,622,725 + ABZR87_RS23435 0.46 -1.2
1,622,725 + ABZR87_RS23435 0.46 +0.7
1,622,726 - ABZR87_RS23435 0.46 -0.2
1,622,803 + ABZR87_RS23435 0.50 -1.7
1,622,941 + ABZR87_RS23435 0.58 -1.2
1,622,942 - ABZR87_RS23435 0.58 -2.2
1,623,028 + ABZR87_RS23435 0.64 -1.2
1,623,029 - ABZR87_RS23435 0.64 -1.7
1,623,230 + ABZR87_RS23435 0.76 -0.3
1,623,230 + ABZR87_RS23435 0.76 -1.5
1,623,230 + ABZR87_RS23435 0.76 -2.8
1,623,230 + ABZR87_RS23435 0.76 -2.6
1,623,340 + ABZR87_RS23435 0.82 -0.9
1,623,341 - ABZR87_RS23435 0.82 -1.4
1,623,341 - ABZR87_RS23435 0.82 -1.9
1,623,385 + ABZR87_RS23435 0.85 -2.6
1,623,386 - ABZR87_RS23435 0.85 -1.3
1,623,386 - ABZR87_RS23435 0.85 -0.9
1,623,391 + ABZR87_RS23435 0.85 -2.6
1,623,391 + ABZR87_RS23435 0.85 -1.5
1,623,392 - ABZR87_RS23435 0.85 -1.5
1,623,392 - ABZR87_RS23435 0.85 -0.9
1,623,610 + -2.3
1,623,680 + -0.7
1,623,680 + -2.6
1,623,681 - +0.1
1,624,043 - ABZR87_RS23440 0.43 -1.4
1,624,147 - ABZR87_RS23440 0.54 -3.0
1,624,612 + ABZR87_RS23445 0.18 -2.6
1,624,612 + ABZR87_RS23445 0.18 -1.2
1,624,613 - ABZR87_RS23445 0.18 -1.1
1,624,861 + -0.6
1,624,862 - -1.6
1,625,022 + ABZR87_RS23450 0.18 -3.5
1,625,380 + ABZR87_RS23450 0.60 -1.2
1,625,380 + ABZR87_RS23450 0.60 -1.2
1,625,380 + ABZR87_RS23450 0.60 -2.8
1,625,458 + ABZR87_RS23450 0.69 -1.2
1,625,458 + ABZR87_RS23450 0.69 -2.1
1,625,459 - ABZR87_RS23450 0.69 -1.8

Or see this region's nucleotide sequence