Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS00350

Experiment: Lauric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS00345 and ABZR87_RS00350 are separated by 9 nucleotidesABZR87_RS00350 and ABZR87_RS00355 overlap by 4 nucleotides ABZR87_RS00345: ABZR87_RS00345 - L-aspartate oxidase, at 68,721 to 70,322 _RS00345 ABZR87_RS00350: ABZR87_RS00350 - carboxylating nicotinate-nucleotide diphosphorylase, at 70,332 to 71,231 _RS00350 ABZR87_RS00355: ABZR87_RS00355 - quinolinate synthase NadA, at 71,228 to 72,376 _RS00355 Position (kb) 70 71 72Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 69.332 kb on + strand, within ABZR87_RS00345at 69.333 kb on - strand, within ABZR87_RS00345at 69.333 kb on - strand, within ABZR87_RS00345at 69.333 kb on - strand, within ABZR87_RS00345at 69.333 kb on - strand, within ABZR87_RS00345at 69.333 kb on - strand, within ABZR87_RS00345at 69.438 kb on + strand, within ABZR87_RS00345at 69.438 kb on + strand, within ABZR87_RS00345at 69.439 kb on - strand, within ABZR87_RS00345at 69.622 kb on - strand, within ABZR87_RS00345at 69.747 kb on + strand, within ABZR87_RS00345at 69.747 kb on + strand, within ABZR87_RS00345at 69.747 kb on + strand, within ABZR87_RS00345at 69.748 kb on - strand, within ABZR87_RS00345at 69.748 kb on - strand, within ABZR87_RS00345at 69.748 kb on - strand, within ABZR87_RS00345at 69.792 kb on - strand, within ABZR87_RS00345at 69.804 kb on + strand, within ABZR87_RS00345at 69.805 kb on - strand, within ABZR87_RS00345at 69.805 kb on - strand, within ABZR87_RS00345at 69.825 kb on + strand, within ABZR87_RS00345at 69.826 kb on - strand, within ABZR87_RS00345at 69.826 kb on - strand, within ABZR87_RS00345at 69.939 kb on + strand, within ABZR87_RS00345at 70.041 kb on + strand, within ABZR87_RS00345at 70.041 kb on + strand, within ABZR87_RS00345at 70.041 kb on + strand, within ABZR87_RS00345at 70.042 kb on - strand, within ABZR87_RS00345at 70.042 kb on - strand, within ABZR87_RS00345at 70.042 kb on - strand, within ABZR87_RS00345at 70.042 kb on - strand, within ABZR87_RS00345at 70.042 kb on - strand, within ABZR87_RS00345at 70.058 kb on + strand, within ABZR87_RS00345at 70.058 kb on + strand, within ABZR87_RS00345at 70.059 kb on - strand, within ABZR87_RS00345at 70.122 kb on + strand, within ABZR87_RS00345at 70.122 kb on + strand, within ABZR87_RS00345at 70.123 kb on - strand, within ABZR87_RS00345at 70.123 kb on - strand, within ABZR87_RS00345at 70.123 kb on - strand, within ABZR87_RS00345at 70.123 kb on - strand, within ABZR87_RS00345at 70.126 kb on - strand, within ABZR87_RS00345at 70.126 kb on - strand, within ABZR87_RS00345at 70.333 kb on + strandat 70.334 kb on - strandat 70.690 kb on + strand, within ABZR87_RS00350at 70.691 kb on - strand, within ABZR87_RS00350at 70.691 kb on - strand, within ABZR87_RS00350at 70.691 kb on - strand, within ABZR87_RS00350at 70.691 kb on - strand, within ABZR87_RS00350at 70.691 kb on - strand, within ABZR87_RS00350at 70.735 kb on + strand, within ABZR87_RS00350at 70.735 kb on + strand, within ABZR87_RS00350at 70.735 kb on + strand, within ABZR87_RS00350at 70.735 kb on + strand, within ABZR87_RS00350at 70.735 kb on + strand, within ABZR87_RS00350at 70.736 kb on - strand, within ABZR87_RS00350at 70.736 kb on - strand, within ABZR87_RS00350at 71.778 kb on + strand, within ABZR87_RS00355at 71.778 kb on + strand, within ABZR87_RS00355at 71.779 kb on - strand, within ABZR87_RS00355at 71.779 kb on - strand, within ABZR87_RS00355at 71.779 kb on - strand, within ABZR87_RS00355at 71.906 kb on - strand, within ABZR87_RS00355at 71.913 kb on + strand, within ABZR87_RS00355at 71.913 kb on + strand, within ABZR87_RS00355at 71.913 kb on + strand, within ABZR87_RS00355at 71.914 kb on - strand, within ABZR87_RS00355at 71.914 kb on - strand, within ABZR87_RS00355at 72.183 kb on + strand, within ABZR87_RS00355at 72.183 kb on + strand, within ABZR87_RS00355at 72.183 kb on + strand, within ABZR87_RS00355at 72.183 kb on + strand, within ABZR87_RS00355at 72.183 kb on + strand, within ABZR87_RS00355at 72.183 kb on + strand, within ABZR87_RS00355at 72.184 kb on - strand, within ABZR87_RS00355at 72.184 kb on - strand, within ABZR87_RS00355at 72.184 kb on - strand, within ABZR87_RS00355at 72.184 kb on - strand, within ABZR87_RS00355at 72.184 kb on - strand, within ABZR87_RS00355at 72.184 kb on - strand, within ABZR87_RS00355at 72.184 kb on - strand, within ABZR87_RS00355at 72.184 kb on - strand, within ABZR87_RS00355at 72.184 kb on - strand, within ABZR87_RS00355at 72.184 kb on - strand, within ABZR87_RS00355at 72.184 kb on - strand, within ABZR87_RS00355at 72.186 kb on + strand, within ABZR87_RS00355at 72.186 kb on + strand, within ABZR87_RS00355at 72.187 kb on - strand, within ABZR87_RS00355at 72.187 kb on - strand, within ABZR87_RS00355at 72.187 kb on - strand, within ABZR87_RS00355at 72.187 kb on - strand, within ABZR87_RS00355

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Per-strain Table

Position Strand Gene LocusTag Fraction Lauric (C)
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69,332 + ABZR87_RS00345 0.38 -1.4
69,333 - ABZR87_RS00345 0.38 -1.1
69,333 - ABZR87_RS00345 0.38 -1.8
69,333 - ABZR87_RS00345 0.38 -0.5
69,333 - ABZR87_RS00345 0.38 -0.2
69,333 - ABZR87_RS00345 0.38 -0.1
69,438 + ABZR87_RS00345 0.45 -1.6
69,438 + ABZR87_RS00345 0.45 -1.1
69,439 - ABZR87_RS00345 0.45 -1.5
69,622 - ABZR87_RS00345 0.56 -2.0
69,747 + ABZR87_RS00345 0.64 -1.9
69,747 + ABZR87_RS00345 0.64 -2.1
69,747 + ABZR87_RS00345 0.64 +0.1
69,748 - ABZR87_RS00345 0.64 -0.1
69,748 - ABZR87_RS00345 0.64 -2.2
69,748 - ABZR87_RS00345 0.64 -0.4
69,792 - ABZR87_RS00345 0.67 -0.6
69,804 + ABZR87_RS00345 0.68 -0.4
69,805 - ABZR87_RS00345 0.68 +0.9
69,805 - ABZR87_RS00345 0.68 -1.4
69,825 + ABZR87_RS00345 0.69 -1.0
69,826 - ABZR87_RS00345 0.69 -1.5
69,826 - ABZR87_RS00345 0.69 -0.9
69,939 + ABZR87_RS00345 0.76 -0.9
70,041 + ABZR87_RS00345 0.82 -0.8
70,041 + ABZR87_RS00345 0.82 -1.4
70,041 + ABZR87_RS00345 0.82 -1.4
70,042 - ABZR87_RS00345 0.82 -1.4
70,042 - ABZR87_RS00345 0.82 -1.1
70,042 - ABZR87_RS00345 0.82 -0.3
70,042 - ABZR87_RS00345 0.82 -0.1
70,042 - ABZR87_RS00345 0.82 -1.4
70,058 + ABZR87_RS00345 0.83 -0.9
70,058 + ABZR87_RS00345 0.83 -0.5
70,059 - ABZR87_RS00345 0.84 -1.3
70,122 + ABZR87_RS00345 0.87 -1.0
70,122 + ABZR87_RS00345 0.87 -1.5
70,123 - ABZR87_RS00345 0.88 +0.5
70,123 - ABZR87_RS00345 0.88 +0.1
70,123 - ABZR87_RS00345 0.88 -2.0
70,123 - ABZR87_RS00345 0.88 -1.2
70,126 - ABZR87_RS00345 0.88 -1.2
70,126 - ABZR87_RS00345 0.88 -0.1
70,333 + +0.5
70,334 - -0.2
70,690 + ABZR87_RS00350 0.40 -0.7
70,691 - ABZR87_RS00350 0.40 -1.4
70,691 - ABZR87_RS00350 0.40 -2.2
70,691 - ABZR87_RS00350 0.40 -0.8
70,691 - ABZR87_RS00350 0.40 -2.7
70,691 - ABZR87_RS00350 0.40 -1.2
70,735 + ABZR87_RS00350 0.45 -1.4
70,735 + ABZR87_RS00350 0.45 -0.6
70,735 + ABZR87_RS00350 0.45 -0.9
70,735 + ABZR87_RS00350 0.45 -2.1
70,735 + ABZR87_RS00350 0.45 -2.5
70,736 - ABZR87_RS00350 0.45 -0.7
70,736 - ABZR87_RS00350 0.45 -0.1
71,778 + ABZR87_RS00355 0.48 -2.0
71,778 + ABZR87_RS00355 0.48 -3.4
71,779 - ABZR87_RS00355 0.48 -2.2
71,779 - ABZR87_RS00355 0.48 +0.9
71,779 - ABZR87_RS00355 0.48 -1.3
71,906 - ABZR87_RS00355 0.59 -1.3
71,913 + ABZR87_RS00355 0.60 -4.4
71,913 + ABZR87_RS00355 0.60 -0.6
71,913 + ABZR87_RS00355 0.60 -0.9
71,914 - ABZR87_RS00355 0.60 -1.0
71,914 - ABZR87_RS00355 0.60 -1.6
72,183 + ABZR87_RS00355 0.83 -2.6
72,183 + ABZR87_RS00355 0.83 -0.8
72,183 + ABZR87_RS00355 0.83 -1.9
72,183 + ABZR87_RS00355 0.83 -0.6
72,183 + ABZR87_RS00355 0.83 -1.9
72,183 + ABZR87_RS00355 0.83 -3.0
72,184 - ABZR87_RS00355 0.83 -0.6
72,184 - ABZR87_RS00355 0.83 -0.1
72,184 - ABZR87_RS00355 0.83 -2.1
72,184 - ABZR87_RS00355 0.83 -1.2
72,184 - ABZR87_RS00355 0.83 -2.3
72,184 - ABZR87_RS00355 0.83 -2.2
72,184 - ABZR87_RS00355 0.83 -0.3
72,184 - ABZR87_RS00355 0.83 -3.0
72,184 - ABZR87_RS00355 0.83 -2.0
72,184 - ABZR87_RS00355 0.83 -1.8
72,184 - ABZR87_RS00355 0.83 -1.5
72,186 + ABZR87_RS00355 0.83 -1.5
72,186 + ABZR87_RS00355 0.83 -1.6
72,187 - ABZR87_RS00355 0.83 -0.9
72,187 - ABZR87_RS00355 0.83 -0.9
72,187 - ABZR87_RS00355 0.83 -1.1
72,187 - ABZR87_RS00355 0.83 -2.9

Or see this region's nucleotide sequence