Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS00345

Experiment: Lauric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS00330 and ABZR87_RS00335 are separated by 180 nucleotidesABZR87_RS00335 and ABZR87_RS00340 are separated by 13 nucleotidesABZR87_RS00340 and ABZR87_RS00345 are separated by 177 nucleotidesABZR87_RS00345 and ABZR87_RS00350 are separated by 9 nucleotidesABZR87_RS00350 and ABZR87_RS00355 overlap by 4 nucleotides ABZR87_RS00330: ABZR87_RS00330 - DNA repair protein RadC, at 67,271 to 67,945 _RS00330 ABZR87_RS00335: ABZR87_RS00335 - 50S ribosomal protein L28, at 68,126 to 68,359 _RS00335 ABZR87_RS00340: ABZR87_RS00340 - 50S ribosomal protein L33, at 68,373 to 68,543 _RS00340 ABZR87_RS00345: ABZR87_RS00345 - L-aspartate oxidase, at 68,721 to 70,322 _RS00345 ABZR87_RS00350: ABZR87_RS00350 - carboxylating nicotinate-nucleotide diphosphorylase, at 70,332 to 71,231 _RS00350 ABZR87_RS00355: ABZR87_RS00355 - quinolinate synthase NadA, at 71,228 to 72,376 _RS00355 Position (kb) 68 69 70 71Strain fitness (log2 ratio) -3 -2 -1 0 1at 67.916 kb on + strandat 67.916 kb on + strandat 67.917 kb on - strandat 67.917 kb on - strandat 68.357 kb on + strandat 68.358 kb on - strandat 68.362 kb on - strandat 68.362 kb on - strandat 68.368 kb on + strandat 68.368 kb on + strandat 68.368 kb on + strandat 68.369 kb on - strandat 68.423 kb on + strand, within ABZR87_RS00340at 68.424 kb on - strand, within ABZR87_RS00340at 68.521 kb on - strand, within ABZR87_RS00340at 68.521 kb on - strand, within ABZR87_RS00340at 68.541 kb on + strandat 68.541 kb on + strandat 68.542 kb on - strandat 68.542 kb on - strandat 68.542 kb on - strandat 68.542 kb on - strandat 68.542 kb on - strandat 68.646 kb on + strandat 68.683 kb on + strandat 68.683 kb on + strandat 68.683 kb on + strandat 68.684 kb on - strandat 68.783 kb on - strandat 68.783 kb on - strandat 68.955 kb on + strand, within ABZR87_RS00345at 68.955 kb on + strand, within ABZR87_RS00345at 68.955 kb on + strand, within ABZR87_RS00345at 68.955 kb on + strand, within ABZR87_RS00345at 68.955 kb on + strand, within ABZR87_RS00345at 68.956 kb on - strand, within ABZR87_RS00345at 69.279 kb on - strand, within ABZR87_RS00345at 69.279 kb on - strand, within ABZR87_RS00345at 69.324 kb on + strand, within ABZR87_RS00345at 69.324 kb on + strand, within ABZR87_RS00345at 69.324 kb on + strand, within ABZR87_RS00345at 69.324 kb on + strand, within ABZR87_RS00345at 69.324 kb on + strand, within ABZR87_RS00345at 69.324 kb on + strand, within ABZR87_RS00345at 69.325 kb on - strand, within ABZR87_RS00345at 69.325 kb on - strand, within ABZR87_RS00345at 69.325 kb on - strand, within ABZR87_RS00345at 69.325 kb on - strand, within ABZR87_RS00345at 69.325 kb on - strand, within ABZR87_RS00345at 69.325 kb on - strand, within ABZR87_RS00345at 69.325 kb on - strand, within ABZR87_RS00345at 69.330 kb on + strand, within ABZR87_RS00345at 69.330 kb on + strand, within ABZR87_RS00345at 69.331 kb on - strand, within ABZR87_RS00345at 69.331 kb on - strand, within ABZR87_RS00345at 69.331 kb on - strand, within ABZR87_RS00345at 69.331 kb on - strand, within ABZR87_RS00345at 69.332 kb on + strand, within ABZR87_RS00345at 69.333 kb on - strand, within ABZR87_RS00345at 69.333 kb on - strand, within ABZR87_RS00345at 69.333 kb on - strand, within ABZR87_RS00345at 69.333 kb on - strand, within ABZR87_RS00345at 69.333 kb on - strand, within ABZR87_RS00345at 69.438 kb on + strand, within ABZR87_RS00345at 69.438 kb on + strand, within ABZR87_RS00345at 69.439 kb on - strand, within ABZR87_RS00345at 69.622 kb on - strand, within ABZR87_RS00345at 69.747 kb on + strand, within ABZR87_RS00345at 69.747 kb on + strand, within ABZR87_RS00345at 69.747 kb on + strand, within ABZR87_RS00345at 69.748 kb on - strand, within ABZR87_RS00345at 69.748 kb on - strand, within ABZR87_RS00345at 69.748 kb on - strand, within ABZR87_RS00345at 69.792 kb on - strand, within ABZR87_RS00345at 69.804 kb on + strand, within ABZR87_RS00345at 69.805 kb on - strand, within ABZR87_RS00345at 69.805 kb on - strand, within ABZR87_RS00345at 69.825 kb on + strand, within ABZR87_RS00345at 69.826 kb on - strand, within ABZR87_RS00345at 69.826 kb on - strand, within ABZR87_RS00345at 69.939 kb on + strand, within ABZR87_RS00345at 70.041 kb on + strand, within ABZR87_RS00345at 70.041 kb on + strand, within ABZR87_RS00345at 70.041 kb on + strand, within ABZR87_RS00345at 70.042 kb on - strand, within ABZR87_RS00345at 70.042 kb on - strand, within ABZR87_RS00345at 70.042 kb on - strand, within ABZR87_RS00345at 70.042 kb on - strand, within ABZR87_RS00345at 70.042 kb on - strand, within ABZR87_RS00345at 70.058 kb on + strand, within ABZR87_RS00345at 70.058 kb on + strand, within ABZR87_RS00345at 70.059 kb on - strand, within ABZR87_RS00345at 70.122 kb on + strand, within ABZR87_RS00345at 70.122 kb on + strand, within ABZR87_RS00345at 70.123 kb on - strand, within ABZR87_RS00345at 70.123 kb on - strand, within ABZR87_RS00345at 70.123 kb on - strand, within ABZR87_RS00345at 70.123 kb on - strand, within ABZR87_RS00345at 70.126 kb on - strand, within ABZR87_RS00345at 70.126 kb on - strand, within ABZR87_RS00345at 70.333 kb on + strandat 70.334 kb on - strandat 70.690 kb on + strand, within ABZR87_RS00350at 70.691 kb on - strand, within ABZR87_RS00350at 70.691 kb on - strand, within ABZR87_RS00350at 70.691 kb on - strand, within ABZR87_RS00350at 70.691 kb on - strand, within ABZR87_RS00350at 70.691 kb on - strand, within ABZR87_RS00350at 70.735 kb on + strand, within ABZR87_RS00350at 70.735 kb on + strand, within ABZR87_RS00350at 70.735 kb on + strand, within ABZR87_RS00350at 70.735 kb on + strand, within ABZR87_RS00350at 70.735 kb on + strand, within ABZR87_RS00350at 70.736 kb on - strand, within ABZR87_RS00350at 70.736 kb on - strand, within ABZR87_RS00350

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Per-strain Table

Position Strand Gene LocusTag Fraction Lauric (C)
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67,916 + -0.3
67,916 + -0.2
67,917 - +1.1
67,917 - +0.1
68,357 + -0.1
68,358 - -1.8
68,362 - -1.0
68,362 - -1.5
68,368 + +0.6
68,368 + -2.1
68,368 + +0.1
68,369 - +0.3
68,423 + ABZR87_RS00340 0.29 -0.6
68,424 - ABZR87_RS00340 0.30 +0.3
68,521 - ABZR87_RS00340 0.87 +0.4
68,521 - ABZR87_RS00340 0.87 +0.3
68,541 + +0.8
68,541 + +0.8
68,542 - +0.1
68,542 - +1.0
68,542 - -0.4
68,542 - +0.0
68,542 - -0.2
68,646 + +0.3
68,683 + +0.1
68,683 + +1.4
68,683 + -0.2
68,684 - +0.0
68,783 - -3.6
68,783 - -1.3
68,955 + ABZR87_RS00345 0.15 -1.4
68,955 + ABZR87_RS00345 0.15 -0.9
68,955 + ABZR87_RS00345 0.15 -0.1
68,955 + ABZR87_RS00345 0.15 -0.8
68,955 + ABZR87_RS00345 0.15 -0.7
68,956 - ABZR87_RS00345 0.15 -0.4
69,279 - ABZR87_RS00345 0.35 -0.3
69,279 - ABZR87_RS00345 0.35 -2.5
69,324 + ABZR87_RS00345 0.38 -1.2
69,324 + ABZR87_RS00345 0.38 -1.2
69,324 + ABZR87_RS00345 0.38 -1.1
69,324 + ABZR87_RS00345 0.38 -0.1
69,324 + ABZR87_RS00345 0.38 -1.1
69,324 + ABZR87_RS00345 0.38 -0.9
69,325 - ABZR87_RS00345 0.38 +0.9
69,325 - ABZR87_RS00345 0.38 -1.3
69,325 - ABZR87_RS00345 0.38 -1.1
69,325 - ABZR87_RS00345 0.38 -0.2
69,325 - ABZR87_RS00345 0.38 -2.6
69,325 - ABZR87_RS00345 0.38 -1.1
69,325 - ABZR87_RS00345 0.38 -3.4
69,330 + ABZR87_RS00345 0.38 +0.6
69,330 + ABZR87_RS00345 0.38 -0.9
69,331 - ABZR87_RS00345 0.38 +0.9
69,331 - ABZR87_RS00345 0.38 -0.3
69,331 - ABZR87_RS00345 0.38 -2.2
69,331 - ABZR87_RS00345 0.38 -0.3
69,332 + ABZR87_RS00345 0.38 -1.4
69,333 - ABZR87_RS00345 0.38 -1.1
69,333 - ABZR87_RS00345 0.38 -1.8
69,333 - ABZR87_RS00345 0.38 -0.5
69,333 - ABZR87_RS00345 0.38 -0.2
69,333 - ABZR87_RS00345 0.38 -0.1
69,438 + ABZR87_RS00345 0.45 -1.6
69,438 + ABZR87_RS00345 0.45 -1.1
69,439 - ABZR87_RS00345 0.45 -1.5
69,622 - ABZR87_RS00345 0.56 -2.0
69,747 + ABZR87_RS00345 0.64 -1.9
69,747 + ABZR87_RS00345 0.64 -2.1
69,747 + ABZR87_RS00345 0.64 +0.1
69,748 - ABZR87_RS00345 0.64 -0.1
69,748 - ABZR87_RS00345 0.64 -2.2
69,748 - ABZR87_RS00345 0.64 -0.4
69,792 - ABZR87_RS00345 0.67 -0.6
69,804 + ABZR87_RS00345 0.68 -0.4
69,805 - ABZR87_RS00345 0.68 +0.9
69,805 - ABZR87_RS00345 0.68 -1.4
69,825 + ABZR87_RS00345 0.69 -1.0
69,826 - ABZR87_RS00345 0.69 -1.5
69,826 - ABZR87_RS00345 0.69 -0.9
69,939 + ABZR87_RS00345 0.76 -0.9
70,041 + ABZR87_RS00345 0.82 -0.8
70,041 + ABZR87_RS00345 0.82 -1.4
70,041 + ABZR87_RS00345 0.82 -1.4
70,042 - ABZR87_RS00345 0.82 -1.4
70,042 - ABZR87_RS00345 0.82 -1.1
70,042 - ABZR87_RS00345 0.82 -0.3
70,042 - ABZR87_RS00345 0.82 -0.1
70,042 - ABZR87_RS00345 0.82 -1.4
70,058 + ABZR87_RS00345 0.83 -0.9
70,058 + ABZR87_RS00345 0.83 -0.5
70,059 - ABZR87_RS00345 0.84 -1.3
70,122 + ABZR87_RS00345 0.87 -1.0
70,122 + ABZR87_RS00345 0.87 -1.5
70,123 - ABZR87_RS00345 0.88 +0.5
70,123 - ABZR87_RS00345 0.88 +0.1
70,123 - ABZR87_RS00345 0.88 -2.0
70,123 - ABZR87_RS00345 0.88 -1.2
70,126 - ABZR87_RS00345 0.88 -1.2
70,126 - ABZR87_RS00345 0.88 -0.1
70,333 + +0.5
70,334 - -0.2
70,690 + ABZR87_RS00350 0.40 -0.7
70,691 - ABZR87_RS00350 0.40 -1.4
70,691 - ABZR87_RS00350 0.40 -2.2
70,691 - ABZR87_RS00350 0.40 -0.8
70,691 - ABZR87_RS00350 0.40 -2.7
70,691 - ABZR87_RS00350 0.40 -1.2
70,735 + ABZR87_RS00350 0.45 -1.4
70,735 + ABZR87_RS00350 0.45 -0.6
70,735 + ABZR87_RS00350 0.45 -0.9
70,735 + ABZR87_RS00350 0.45 -2.1
70,735 + ABZR87_RS00350 0.45 -2.5
70,736 - ABZR87_RS00350 0.45 -0.7
70,736 - ABZR87_RS00350 0.45 -0.1

Or see this region's nucleotide sequence