Experiment: KB with Paclitaxel 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_5024 and Psyr_5025 are separated by 0 nucleotides Psyr_5025 and Psyr_5026 are separated by 165 nucleotides Psyr_5026 and Psyr_5027 are separated by 247 nucleotides Psyr_5027 and Psyr_5028 are separated by 192 nucleotides
Psyr_5024: Psyr_5024 - conserved hypothetical protein, at 5,964,171 to 5,966,132
_5024
Psyr_5025: Psyr_5025 - conserved hypothetical protein, at 5,966,133 to 5,966,510
_5025
Psyr_5026: Psyr_5026 - conserved hypothetical protein, at 5,966,676 to 5,967,119
_5026
Psyr_5027: Psyr_5027 - bacterial nucleoid protein HU alpha subunit, at 5,967,367 to 5,967,642
_5027
Psyr_5028: Psyr_5028 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase, at 5,967,835 to 5,968,983
_5028
Position (kb) 5966
5967
5968 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5965.705 kb on + strand, within Psyr_5024 at 5965.705 kb on + strand, within Psyr_5024 at 5965.705 kb on + strand, within Psyr_5024 at 5965.705 kb on + strand, within Psyr_5024 at 5965.705 kb on + strand, within Psyr_5024 at 5965.705 kb on + strand, within Psyr_5024 at 5965.705 kb on + strand, within Psyr_5024 at 5965.705 kb on + strand, within Psyr_5024 at 5965.706 kb on - strand, within Psyr_5024 at 5965.706 kb on - strand, within Psyr_5024 at 5965.706 kb on - strand, within Psyr_5024 at 5965.706 kb on - strand, within Psyr_5024 at 5965.706 kb on - strand, within Psyr_5024 at 5965.706 kb on - strand, within Psyr_5024 at 5965.706 kb on - strand, within Psyr_5024 at 5965.706 kb on - strand, within Psyr_5024 at 5965.709 kb on + strand, within Psyr_5024 at 5965.709 kb on + strand, within Psyr_5024 at 5965.710 kb on - strand, within Psyr_5024 at 5965.791 kb on + strand, within Psyr_5024 at 5965.791 kb on + strand, within Psyr_5024 at 5965.792 kb on - strand, within Psyr_5024 at 5965.792 kb on - strand, within Psyr_5024 at 5966.161 kb on + strand at 5966.162 kb on - strand at 5966.511 kb on - strand at 5966.511 kb on - strand at 5966.560 kb on + strand at 5966.718 kb on + strand at 5966.718 kb on + strand at 5966.718 kb on + strand at 5966.718 kb on + strand at 5966.718 kb on + strand at 5966.718 kb on + strand at 5966.718 kb on + strand at 5966.718 kb on + strand at 5966.719 kb on - strand at 5966.719 kb on - strand at 5966.719 kb on - strand at 5966.719 kb on - strand at 5966.719 kb on - strand at 5966.719 kb on - strand at 5966.719 kb on - strand at 5966.719 kb on - strand at 5966.743 kb on + strand, within Psyr_5026 at 5966.743 kb on + strand, within Psyr_5026 at 5966.743 kb on + strand, within Psyr_5026 at 5966.743 kb on + strand, within Psyr_5026 at 5966.744 kb on - strand, within Psyr_5026 at 5966.744 kb on - strand, within Psyr_5026 at 5966.744 kb on - strand, within Psyr_5026 at 5966.744 kb on - strand, within Psyr_5026 at 5966.744 kb on - strand, within Psyr_5026 at 5966.890 kb on + strand, within Psyr_5026 at 5966.890 kb on + strand, within Psyr_5026 at 5966.890 kb on + strand, within Psyr_5026 at 5966.891 kb on - strand, within Psyr_5026 at 5966.891 kb on - strand, within Psyr_5026 at 5966.891 kb on - strand, within Psyr_5026 at 5966.891 kb on - strand, within Psyr_5026 at 5966.891 kb on - strand, within Psyr_5026 at 5966.891 kb on - strand, within Psyr_5026 at 5966.891 kb on - strand, within Psyr_5026 at 5967.052 kb on + strand, within Psyr_5026 at 5967.052 kb on + strand, within Psyr_5026 at 5967.052 kb on + strand, within Psyr_5026 at 5967.052 kb on + strand, within Psyr_5026 at 5967.053 kb on - strand, within Psyr_5026 at 5967.053 kb on - strand, within Psyr_5026 at 5967.053 kb on - strand, within Psyr_5026 at 5967.053 kb on - strand, within Psyr_5026 at 5967.053 kb on - strand, within Psyr_5026 at 5967.053 kb on - strand, within Psyr_5026 at 5967.053 kb on - strand, within Psyr_5026 at 5967.137 kb on + strand at 5967.137 kb on + strand at 5967.138 kb on - strand at 5967.138 kb on - strand at 5967.138 kb on - strand at 5967.138 kb on - strand at 5967.169 kb on - strand at 5967.169 kb on - strand at 5967.223 kb on + strand at 5967.223 kb on + strand at 5967.223 kb on + strand at 5967.223 kb on + strand at 5967.223 kb on + strand at 5967.223 kb on + strand at 5967.224 kb on - strand at 5967.224 kb on - strand at 5967.224 kb on - strand at 5967.224 kb on - strand at 5967.279 kb on + strand at 5967.279 kb on + strand at 5967.279 kb on + strand at 5967.280 kb on - strand at 5967.280 kb on - strand at 5967.508 kb on + strand, within Psyr_5027 at 5967.547 kb on - strand, within Psyr_5027 at 5967.642 kb on + strand at 5967.642 kb on + strand at 5967.642 kb on + strand at 5967.643 kb on - strand at 5967.643 kb on - strand at 5967.643 kb on - strand at 5967.657 kb on - strand at 5967.672 kb on + strand at 5967.672 kb on + strand at 5967.672 kb on + strand at 5967.672 kb on + strand at 5967.672 kb on + strand at 5967.673 kb on - strand at 5967.725 kb on + strand at 5967.726 kb on - strand at 5967.726 kb on - strand at 5967.726 kb on - strand at 5967.804 kb on + strand at 5967.804 kb on + strand at 5967.805 kb on - strand at 5968.055 kb on + strand, within Psyr_5028 at 5968.056 kb on - strand, within Psyr_5028
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Paclitaxel 10 mM remove 5,965,705 + Psyr_5024 0.78 -0.6 5,965,705 + Psyr_5024 0.78 -0.6 5,965,705 + Psyr_5024 0.78 +0.3 5,965,705 + Psyr_5024 0.78 +0.9 5,965,705 + Psyr_5024 0.78 -0.6 5,965,705 + Psyr_5024 0.78 +0.8 5,965,705 + Psyr_5024 0.78 +1.5 5,965,705 + Psyr_5024 0.78 -0.7 5,965,706 - Psyr_5024 0.78 -0.3 5,965,706 - Psyr_5024 0.78 -0.8 5,965,706 - Psyr_5024 0.78 +1.3 5,965,706 - Psyr_5024 0.78 -0.5 5,965,706 - Psyr_5024 0.78 -2.6 5,965,706 - Psyr_5024 0.78 +0.2 5,965,706 - Psyr_5024 0.78 +0.1 5,965,706 - Psyr_5024 0.78 -0.7 5,965,709 + Psyr_5024 0.78 -1.1 5,965,709 + Psyr_5024 0.78 +0.3 5,965,710 - Psyr_5024 0.78 -0.8 5,965,791 + Psyr_5024 0.83 +0.3 5,965,791 + Psyr_5024 0.83 +0.4 5,965,792 - Psyr_5024 0.83 -0.3 5,965,792 - Psyr_5024 0.83 -0.8 5,966,161 + -0.8 5,966,162 - +1.5 5,966,511 - +3.8 5,966,511 - -0.1 5,966,560 + +0.0 5,966,718 + -0.1 5,966,718 + +1.0 5,966,718 + -0.3 5,966,718 + +4.1 5,966,718 + +0.3 5,966,718 + +0.9 5,966,718 + -1.2 5,966,718 + +1.4 5,966,719 - +0.2 5,966,719 - +0.9 5,966,719 - -1.8 5,966,719 - +0.5 5,966,719 - +0.9 5,966,719 - -0.5 5,966,719 - +0.9 5,966,719 - +1.5 5,966,743 + Psyr_5026 0.15 +0.4 5,966,743 + Psyr_5026 0.15 +0.4 5,966,743 + Psyr_5026 0.15 +0.1 5,966,743 + Psyr_5026 0.15 +0.8 5,966,744 - Psyr_5026 0.15 -0.6 5,966,744 - Psyr_5026 0.15 +1.2 5,966,744 - Psyr_5026 0.15 +0.9 5,966,744 - Psyr_5026 0.15 +0.3 5,966,744 - Psyr_5026 0.15 -0.3 5,966,890 + Psyr_5026 0.48 -0.5 5,966,890 + Psyr_5026 0.48 +1.0 5,966,890 + Psyr_5026 0.48 -1.0 5,966,891 - Psyr_5026 0.48 +4.1 5,966,891 - Psyr_5026 0.48 -3.1 5,966,891 - Psyr_5026 0.48 +1.8 5,966,891 - Psyr_5026 0.48 +1.5 5,966,891 - Psyr_5026 0.48 -0.0 5,966,891 - Psyr_5026 0.48 -3.6 5,966,891 - Psyr_5026 0.48 +0.8 5,967,052 + Psyr_5026 0.85 +0.6 5,967,052 + Psyr_5026 0.85 +0.7 5,967,052 + Psyr_5026 0.85 -0.4 5,967,052 + Psyr_5026 0.85 -0.4 5,967,053 - Psyr_5026 0.85 +1.0 5,967,053 - Psyr_5026 0.85 +0.3 5,967,053 - Psyr_5026 0.85 +0.5 5,967,053 - Psyr_5026 0.85 +0.8 5,967,053 - Psyr_5026 0.85 +1.0 5,967,053 - Psyr_5026 0.85 -1.3 5,967,053 - Psyr_5026 0.85 +0.7 5,967,137 + +1.3 5,967,137 + +0.3 5,967,138 - +3.1 5,967,138 - +0.9 5,967,138 - -1.1 5,967,138 - +1.5 5,967,169 - +0.5 5,967,169 - -0.4 5,967,223 + -0.6 5,967,223 + +1.4 5,967,223 + +0.9 5,967,223 + +0.1 5,967,223 + -0.6 5,967,223 + +0.2 5,967,224 - -0.1 5,967,224 - +0.0 5,967,224 - -0.5 5,967,224 - +0.8 5,967,279 + -0.2 5,967,279 + -0.8 5,967,279 + +0.1 5,967,280 - +1.1 5,967,280 - +0.2 5,967,508 + Psyr_5027 0.51 +0.6 5,967,547 - Psyr_5027 0.65 -0.1 5,967,642 + +0.2 5,967,642 + +1.6 5,967,642 + +0.3 5,967,643 - +0.9 5,967,643 - -0.0 5,967,643 - -0.3 5,967,657 - +0.2 5,967,672 + +0.5 5,967,672 + -1.0 5,967,672 + -1.2 5,967,672 + -0.3 5,967,672 + +0.8 5,967,673 - -0.6 5,967,725 + +0.0 5,967,726 - -0.4 5,967,726 - -0.8 5,967,726 - +1.1 5,967,804 + +0.2 5,967,804 + -2.6 5,967,805 - +0.9 5,968,055 + Psyr_5028 0.19 -0.5 5,968,056 - Psyr_5028 0.19 +0.5
Or see this region's nucleotide sequence