Experiment: KB with Paclitaxel 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4824 and Psyr_4825 are separated by 112 nucleotides Psyr_4825 and Psyr_4826 are separated by 34 nucleotides
Psyr_4824: Psyr_4824 - ABC transporter, substrate-binding protein, aliphatic sulfonate, at 5,721,697 to 5,722,632
_4824
Psyr_4825: Psyr_4825 - xenobiotic compound monooxygenase, DszA family, A subunit, at 5,722,745 to 5,724,070
_4825
Psyr_4826: Psyr_4826 - TonB-dependent receptor:TonB box, N-terminal, at 5,724,105 to 5,726,372
_4826
Position (kb) 5722
5723
5724
5725 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5721.823 kb on + strand, within Psyr_4824 at 5721.842 kb on + strand, within Psyr_4824 at 5721.843 kb on - strand, within Psyr_4824 at 5721.886 kb on + strand, within Psyr_4824 at 5721.886 kb on + strand, within Psyr_4824 at 5721.887 kb on - strand, within Psyr_4824 at 5721.895 kb on - strand, within Psyr_4824 at 5721.895 kb on - strand, within Psyr_4824 at 5722.001 kb on + strand, within Psyr_4824 at 5722.001 kb on + strand, within Psyr_4824 at 5722.001 kb on + strand, within Psyr_4824 at 5722.001 kb on + strand, within Psyr_4824 at 5722.002 kb on - strand, within Psyr_4824 at 5722.002 kb on - strand, within Psyr_4824 at 5722.002 kb on - strand, within Psyr_4824 at 5722.002 kb on - strand, within Psyr_4824 at 5722.076 kb on + strand, within Psyr_4824 at 5722.076 kb on + strand, within Psyr_4824 at 5722.076 kb on + strand, within Psyr_4824 at 5722.076 kb on + strand, within Psyr_4824 at 5722.076 kb on + strand, within Psyr_4824 at 5722.076 kb on + strand, within Psyr_4824 at 5722.077 kb on - strand, within Psyr_4824 at 5722.077 kb on - strand, within Psyr_4824 at 5722.077 kb on - strand, within Psyr_4824 at 5722.079 kb on + strand, within Psyr_4824 at 5722.079 kb on + strand, within Psyr_4824 at 5722.079 kb on + strand, within Psyr_4824 at 5722.079 kb on + strand, within Psyr_4824 at 5722.080 kb on - strand, within Psyr_4824 at 5722.080 kb on - strand, within Psyr_4824 at 5722.152 kb on - strand, within Psyr_4824 at 5722.152 kb on - strand, within Psyr_4824 at 5722.165 kb on - strand, within Psyr_4824 at 5722.165 kb on - strand, within Psyr_4824 at 5722.212 kb on + strand, within Psyr_4824 at 5722.212 kb on + strand, within Psyr_4824 at 5722.212 kb on + strand, within Psyr_4824 at 5722.212 kb on + strand, within Psyr_4824 at 5722.213 kb on - strand, within Psyr_4824 at 5722.213 kb on - strand, within Psyr_4824 at 5722.213 kb on - strand, within Psyr_4824 at 5722.337 kb on + strand, within Psyr_4824 at 5722.337 kb on + strand, within Psyr_4824 at 5722.337 kb on + strand, within Psyr_4824 at 5722.338 kb on - strand, within Psyr_4824 at 5722.338 kb on - strand, within Psyr_4824 at 5722.338 kb on - strand, within Psyr_4824 at 5722.726 kb on + strand at 5722.727 kb on - strand at 5722.753 kb on + strand at 5722.753 kb on + strand at 5722.754 kb on - strand at 5722.754 kb on - strand at 5722.804 kb on - strand at 5722.804 kb on - strand at 5722.832 kb on + strand at 5722.833 kb on - strand at 5723.317 kb on - strand, within Psyr_4825 at 5723.317 kb on - strand, within Psyr_4825 at 5723.518 kb on - strand, within Psyr_4825 at 5723.518 kb on - strand, within Psyr_4825 at 5723.741 kb on + strand, within Psyr_4825 at 5723.742 kb on - strand, within Psyr_4825 at 5723.760 kb on + strand, within Psyr_4825 at 5723.760 kb on + strand, within Psyr_4825 at 5723.760 kb on + strand, within Psyr_4825 at 5723.760 kb on + strand, within Psyr_4825 at 5723.760 kb on + strand, within Psyr_4825 at 5723.760 kb on + strand, within Psyr_4825 at 5723.761 kb on - strand, within Psyr_4825 at 5723.761 kb on - strand, within Psyr_4825 at 5723.761 kb on - strand, within Psyr_4825 at 5723.761 kb on - strand, within Psyr_4825 at 5723.761 kb on - strand, within Psyr_4825 at 5723.761 kb on - strand, within Psyr_4825 at 5723.761 kb on - strand, within Psyr_4825 at 5723.761 kb on - strand, within Psyr_4825 at 5723.761 kb on - strand, within Psyr_4825 at 5723.791 kb on + strand, within Psyr_4825 at 5723.792 kb on - strand, within Psyr_4825 at 5724.070 kb on + strand at 5724.070 kb on + strand at 5724.070 kb on + strand at 5724.071 kb on - strand at 5724.071 kb on - strand at 5724.082 kb on + strand at 5724.082 kb on + strand at 5724.082 kb on + strand at 5724.136 kb on + strand at 5724.172 kb on + strand at 5724.172 kb on + strand at 5724.172 kb on + strand at 5724.172 kb on + strand at 5724.172 kb on + strand at 5724.172 kb on + strand at 5724.172 kb on + strand at 5724.172 kb on + strand at 5724.173 kb on - strand at 5724.173 kb on - strand at 5724.173 kb on - strand at 5724.173 kb on - strand at 5724.173 kb on - strand at 5724.173 kb on - strand at 5724.203 kb on - strand at 5724.256 kb on + strand at 5724.257 kb on - strand at 5724.257 kb on - strand at 5724.332 kb on - strand, within Psyr_4826 at 5724.332 kb on - strand, within Psyr_4826 at 5724.355 kb on + strand, within Psyr_4826 at 5724.355 kb on + strand, within Psyr_4826 at 5724.355 kb on + strand, within Psyr_4826 at 5724.403 kb on + strand, within Psyr_4826 at 5724.403 kb on + strand, within Psyr_4826 at 5724.404 kb on - strand, within Psyr_4826 at 5724.418 kb on + strand, within Psyr_4826 at 5724.418 kb on + strand, within Psyr_4826 at 5724.418 kb on + strand, within Psyr_4826 at 5724.418 kb on + strand, within Psyr_4826 at 5724.419 kb on - strand, within Psyr_4826 at 5724.419 kb on - strand, within Psyr_4826 at 5724.520 kb on + strand, within Psyr_4826 at 5724.521 kb on - strand, within Psyr_4826 at 5724.661 kb on + strand, within Psyr_4826 at 5724.661 kb on + strand, within Psyr_4826 at 5724.661 kb on + strand, within Psyr_4826 at 5724.661 kb on + strand, within Psyr_4826 at 5724.661 kb on + strand, within Psyr_4826 at 5724.662 kb on - strand, within Psyr_4826 at 5724.662 kb on - strand, within Psyr_4826 at 5724.662 kb on - strand, within Psyr_4826 at 5724.662 kb on - strand, within Psyr_4826 at 5724.662 kb on - strand, within Psyr_4826 at 5724.662 kb on - strand, within Psyr_4826 at 5724.670 kb on + strand, within Psyr_4826 at 5724.670 kb on + strand, within Psyr_4826 at 5724.671 kb on - strand, within Psyr_4826 at 5724.808 kb on + strand, within Psyr_4826 at 5724.808 kb on + strand, within Psyr_4826 at 5724.808 kb on + strand, within Psyr_4826 at 5724.808 kb on + strand, within Psyr_4826 at 5724.835 kb on + strand, within Psyr_4826 at 5724.836 kb on - strand, within Psyr_4826 at 5724.836 kb on - strand, within Psyr_4826 at 5724.844 kb on + strand, within Psyr_4826 at 5724.844 kb on + strand, within Psyr_4826 at 5724.844 kb on + strand, within Psyr_4826 at 5724.844 kb on + strand, within Psyr_4826 at 5724.844 kb on + strand, within Psyr_4826 at 5724.844 kb on + strand, within Psyr_4826 at 5724.844 kb on + strand, within Psyr_4826 at 5724.844 kb on + strand, within Psyr_4826 at 5724.844 kb on + strand, within Psyr_4826 at 5724.844 kb on + strand, within Psyr_4826 at 5724.845 kb on - strand, within Psyr_4826 at 5724.845 kb on - strand, within Psyr_4826 at 5724.845 kb on - strand, within Psyr_4826 at 5724.845 kb on - strand, within Psyr_4826 at 5724.845 kb on - strand, within Psyr_4826 at 5724.845 kb on - strand, within Psyr_4826 at 5724.845 kb on - strand, within Psyr_4826 at 5724.845 kb on - strand, within Psyr_4826 at 5724.845 kb on - strand, within Psyr_4826 at 5724.845 kb on - strand, within Psyr_4826 at 5724.845 kb on - strand, within Psyr_4826 at 5724.845 kb on - strand, within Psyr_4826 at 5724.845 kb on - strand, within Psyr_4826 at 5724.845 kb on - strand, within Psyr_4826 at 5724.845 kb on - strand, within Psyr_4826 at 5724.845 kb on - strand, within Psyr_4826 at 5724.845 kb on - strand, within Psyr_4826 at 5724.845 kb on - strand, within Psyr_4826 at 5724.985 kb on + strand, within Psyr_4826 at 5724.985 kb on + strand, within Psyr_4826 at 5724.986 kb on - strand, within Psyr_4826 at 5724.986 kb on - strand, within Psyr_4826 at 5724.986 kb on - strand, within Psyr_4826 at 5724.986 kb on - strand, within Psyr_4826
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Paclitaxel 10 mM remove 5,721,823 + Psyr_4824 0.13 -0.3 5,721,842 + Psyr_4824 0.15 +0.8 5,721,843 - Psyr_4824 0.16 -0.5 5,721,886 + Psyr_4824 0.20 -0.6 5,721,886 + Psyr_4824 0.20 -0.2 5,721,887 - Psyr_4824 0.20 -0.5 5,721,895 - Psyr_4824 0.21 -0.3 5,721,895 - Psyr_4824 0.21 +0.3 5,722,001 + Psyr_4824 0.32 -0.6 5,722,001 + Psyr_4824 0.32 +0.6 5,722,001 + Psyr_4824 0.32 +0.0 5,722,001 + Psyr_4824 0.32 -0.7 5,722,002 - Psyr_4824 0.33 +0.4 5,722,002 - Psyr_4824 0.33 +0.3 5,722,002 - Psyr_4824 0.33 +2.8 5,722,002 - Psyr_4824 0.33 -0.1 5,722,076 + Psyr_4824 0.40 +0.0 5,722,076 + Psyr_4824 0.40 +1.3 5,722,076 + Psyr_4824 0.40 -1.1 5,722,076 + Psyr_4824 0.40 -0.9 5,722,076 + Psyr_4824 0.40 -0.8 5,722,076 + Psyr_4824 0.40 +0.1 5,722,077 - Psyr_4824 0.41 -1.8 5,722,077 - Psyr_4824 0.41 +0.7 5,722,077 - Psyr_4824 0.41 -0.3 5,722,079 + Psyr_4824 0.41 -1.4 5,722,079 + Psyr_4824 0.41 +0.5 5,722,079 + Psyr_4824 0.41 +0.2 5,722,079 + Psyr_4824 0.41 +0.7 5,722,080 - Psyr_4824 0.41 +0.5 5,722,080 - Psyr_4824 0.41 +1.5 5,722,152 - Psyr_4824 0.49 +1.5 5,722,152 - Psyr_4824 0.49 -1.2 5,722,165 - Psyr_4824 0.50 -0.1 5,722,165 - Psyr_4824 0.50 -2.0 5,722,212 + Psyr_4824 0.55 +1.0 5,722,212 + Psyr_4824 0.55 -0.8 5,722,212 + Psyr_4824 0.55 +0.9 5,722,212 + Psyr_4824 0.55 -0.4 5,722,213 - Psyr_4824 0.55 +1.0 5,722,213 - Psyr_4824 0.55 -0.3 5,722,213 - Psyr_4824 0.55 +1.5 5,722,337 + Psyr_4824 0.68 +2.4 5,722,337 + Psyr_4824 0.68 +0.4 5,722,337 + Psyr_4824 0.68 +2.8 5,722,338 - Psyr_4824 0.68 -0.5 5,722,338 - Psyr_4824 0.68 -0.2 5,722,338 - Psyr_4824 0.68 +1.1 5,722,726 + -0.3 5,722,727 - +0.0 5,722,753 + -1.6 5,722,753 + -0.6 5,722,754 - -0.4 5,722,754 - +1.1 5,722,804 - -0.6 5,722,804 - +0.2 5,722,832 + -0.4 5,722,833 - -0.0 5,723,317 - Psyr_4825 0.43 +0.5 5,723,317 - Psyr_4825 0.43 +0.1 5,723,518 - Psyr_4825 0.58 +0.4 5,723,518 - Psyr_4825 0.58 -0.1 5,723,741 + Psyr_4825 0.75 +0.4 5,723,742 - Psyr_4825 0.75 +0.9 5,723,760 + Psyr_4825 0.77 -1.5 5,723,760 + Psyr_4825 0.77 +1.5 5,723,760 + Psyr_4825 0.77 +0.3 5,723,760 + Psyr_4825 0.77 +0.9 5,723,760 + Psyr_4825 0.77 -0.4 5,723,760 + Psyr_4825 0.77 -2.6 5,723,761 - Psyr_4825 0.77 +1.6 5,723,761 - Psyr_4825 0.77 +0.9 5,723,761 - Psyr_4825 0.77 -0.5 5,723,761 - Psyr_4825 0.77 +0.9 5,723,761 - Psyr_4825 0.77 -0.2 5,723,761 - Psyr_4825 0.77 +0.8 5,723,761 - Psyr_4825 0.77 +0.2 5,723,761 - Psyr_4825 0.77 +0.8 5,723,761 - Psyr_4825 0.77 +1.5 5,723,791 + Psyr_4825 0.79 -1.2 5,723,792 - Psyr_4825 0.79 +0.6 5,724,070 + +0.9 5,724,070 + +1.5 5,724,070 + +0.2 5,724,071 - -1.1 5,724,071 - -0.1 5,724,082 + -0.1 5,724,082 + -0.5 5,724,082 + -0.2 5,724,136 + -1.8 5,724,172 + -1.7 5,724,172 + +2.5 5,724,172 + +4.2 5,724,172 + -0.4 5,724,172 + -0.0 5,724,172 + -0.4 5,724,172 + -0.5 5,724,172 + -0.1 5,724,173 - +1.1 5,724,173 - +0.8 5,724,173 - -0.9 5,724,173 - +0.9 5,724,173 - -2.8 5,724,173 - -1.5 5,724,203 - +1.2 5,724,256 + -0.7 5,724,257 - -1.3 5,724,257 - +0.3 5,724,332 - Psyr_4826 0.10 +0.2 5,724,332 - Psyr_4826 0.10 +0.2 5,724,355 + Psyr_4826 0.11 +1.5 5,724,355 + Psyr_4826 0.11 +1.5 5,724,355 + Psyr_4826 0.11 -1.4 5,724,403 + Psyr_4826 0.13 -2.3 5,724,403 + Psyr_4826 0.13 -0.4 5,724,404 - Psyr_4826 0.13 +0.7 5,724,418 + Psyr_4826 0.14 +1.1 5,724,418 + Psyr_4826 0.14 +0.8 5,724,418 + Psyr_4826 0.14 +0.6 5,724,418 + Psyr_4826 0.14 +0.2 5,724,419 - Psyr_4826 0.14 -0.8 5,724,419 - Psyr_4826 0.14 +0.3 5,724,520 + Psyr_4826 0.18 -0.1 5,724,521 - Psyr_4826 0.18 +1.0 5,724,661 + Psyr_4826 0.25 +0.2 5,724,661 + Psyr_4826 0.25 +0.6 5,724,661 + Psyr_4826 0.25 -0.6 5,724,661 + Psyr_4826 0.25 -2.7 5,724,661 + Psyr_4826 0.25 -0.3 5,724,662 - Psyr_4826 0.25 -2.1 5,724,662 - Psyr_4826 0.25 -1.2 5,724,662 - Psyr_4826 0.25 +0.1 5,724,662 - Psyr_4826 0.25 +0.4 5,724,662 - Psyr_4826 0.25 -0.6 5,724,662 - Psyr_4826 0.25 -0.6 5,724,670 + Psyr_4826 0.25 -0.9 5,724,670 + Psyr_4826 0.25 -0.6 5,724,671 - Psyr_4826 0.25 +0.7 5,724,808 + Psyr_4826 0.31 +0.2 5,724,808 + Psyr_4826 0.31 -0.7 5,724,808 + Psyr_4826 0.31 +0.7 5,724,808 + Psyr_4826 0.31 +1.2 5,724,835 + Psyr_4826 0.32 +0.8 5,724,836 - Psyr_4826 0.32 -0.2 5,724,836 - Psyr_4826 0.32 +0.8 5,724,844 + Psyr_4826 0.33 +0.6 5,724,844 + Psyr_4826 0.33 +0.8 5,724,844 + Psyr_4826 0.33 +0.3 5,724,844 + Psyr_4826 0.33 +1.1 5,724,844 + Psyr_4826 0.33 +2.2 5,724,844 + Psyr_4826 0.33 -0.3 5,724,844 + Psyr_4826 0.33 +0.3 5,724,844 + Psyr_4826 0.33 +1.6 5,724,844 + Psyr_4826 0.33 +0.2 5,724,844 + Psyr_4826 0.33 +0.9 5,724,845 - Psyr_4826 0.33 +0.9 5,724,845 - Psyr_4826 0.33 -0.6 5,724,845 - Psyr_4826 0.33 +1.1 5,724,845 - Psyr_4826 0.33 +1.2 5,724,845 - Psyr_4826 0.33 +0.3 5,724,845 - Psyr_4826 0.33 +1.3 5,724,845 - Psyr_4826 0.33 -1.4 5,724,845 - Psyr_4826 0.33 -0.5 5,724,845 - Psyr_4826 0.33 -0.2 5,724,845 - Psyr_4826 0.33 -0.8 5,724,845 - Psyr_4826 0.33 -0.6 5,724,845 - Psyr_4826 0.33 +1.6 5,724,845 - Psyr_4826 0.33 +1.1 5,724,845 - Psyr_4826 0.33 -0.4 5,724,845 - Psyr_4826 0.33 +1.0 5,724,845 - Psyr_4826 0.33 -1.5 5,724,845 - Psyr_4826 0.33 -0.5 5,724,845 - Psyr_4826 0.33 +0.3 5,724,985 + Psyr_4826 0.39 -0.3 5,724,985 + Psyr_4826 0.39 -0.2 5,724,986 - Psyr_4826 0.39 -0.6 5,724,986 - Psyr_4826 0.39 -1.3 5,724,986 - Psyr_4826 0.39 +0.4 5,724,986 - Psyr_4826 0.39 +0.2
Or see this region's nucleotide sequence