Experiment: KB with Paclitaxel 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4202 and Psyr_4203 are separated by 80 nucleotides Psyr_4203 and Psyr_4204 are separated by 307 nucleotides Psyr_4204 and Psyr_4205 are separated by 770 nucleotides
Psyr_4202: Psyr_4202 - Sodium:neurotransmitter symporter, at 4,997,122 to 4,998,558
_4202
Psyr_4203: Psyr_4203 - SsrA-binding protein, at 4,998,639 to 4,999,121
_4203
Psyr_4204: Psyr_4204 - conserved hypothetical protein, at 4,999,429 to 4,999,713
_4204
Psyr_4205: Psyr_4205 - insecticidal toxin complex protein TcdA1, at 5,000,484 to 5,007,992
_4205
Position (kb) 4999
5000 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4998.624 kb on + strand at 4998.624 kb on + strand at 4998.624 kb on + strand at 4998.624 kb on + strand at 4998.625 kb on - strand at 4998.626 kb on + strand at 4998.626 kb on + strand at 4998.626 kb on + strand at 4998.683 kb on + strand at 4998.702 kb on + strand, within Psyr_4203 at 4998.702 kb on + strand, within Psyr_4203 at 4998.779 kb on - strand, within Psyr_4203 at 4998.795 kb on + strand, within Psyr_4203 at 4998.796 kb on - strand, within Psyr_4203 at 4998.796 kb on - strand, within Psyr_4203 at 4999.119 kb on + strand at 4999.119 kb on + strand at 4999.120 kb on - strand at 4999.174 kb on + strand at 4999.175 kb on - strand at 4999.175 kb on - strand at 4999.175 kb on - strand at 4999.175 kb on - strand at 4999.175 kb on - strand at 4999.175 kb on - strand at 4999.175 kb on - strand at 4999.175 kb on - strand at 4999.175 kb on - strand at 4999.179 kb on - strand at 4999.179 kb on - strand at 4999.280 kb on + strand at 4999.281 kb on - strand at 4999.291 kb on - strand at 4999.306 kb on + strand at 4999.306 kb on + strand at 4999.306 kb on + strand at 4999.307 kb on - strand at 4999.307 kb on - strand at 4999.414 kb on + strand at 4999.414 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.548 kb on + strand, within Psyr_4204 at 4999.548 kb on + strand, within Psyr_4204 at 4999.711 kb on + strand at 4999.711 kb on + strand at 4999.712 kb on - strand at 4999.712 kb on - strand at 4999.887 kb on + strand at 4999.909 kb on + strand at 4999.911 kb on + strand at 5000.015 kb on + strand at 5000.037 kb on + strand at 5000.037 kb on + strand at 5000.055 kb on + strand at 5000.058 kb on + strand at 5000.058 kb on + strand at 5000.058 kb on + strand at 5000.058 kb on + strand at 5000.058 kb on + strand at 5000.058 kb on + strand at 5000.058 kb on + strand at 5000.059 kb on - strand at 5000.059 kb on - strand at 5000.156 kb on + strand at 5000.156 kb on + strand at 5000.267 kb on + strand at 5000.267 kb on + strand at 5000.295 kb on + strand at 5000.296 kb on - strand at 5000.319 kb on + strand at 5000.334 kb on - strand at 5000.334 kb on - strand at 5000.387 kb on + strand at 5000.387 kb on + strand at 5000.387 kb on + strand at 5000.387 kb on + strand at 5000.387 kb on + strand at 5000.387 kb on + strand at 5000.387 kb on + strand at 5000.387 kb on + strand at 5000.387 kb on + strand at 5000.387 kb on + strand at 5000.387 kb on + strand at 5000.387 kb on + strand at 5000.388 kb on - strand at 5000.388 kb on - strand at 5000.388 kb on - strand at 5000.388 kb on - strand at 5000.388 kb on - strand at 5000.388 kb on - strand at 5000.388 kb on - strand at 5000.388 kb on - strand at 5000.388 kb on - strand at 5000.388 kb on - strand at 5000.388 kb on - strand at 5000.388 kb on - strand at 5000.390 kb on + strand at 5000.390 kb on + strand at 5000.390 kb on + strand at 5000.390 kb on + strand at 5000.391 kb on - strand at 5000.391 kb on - strand at 5000.433 kb on + strand at 5000.434 kb on - strand at 5000.485 kb on + strand at 5000.485 kb on + strand at 5000.486 kb on - strand at 5000.486 kb on - strand at 5000.486 kb on - strand at 5000.486 kb on - strand at 5000.486 kb on - strand at 5000.486 kb on - strand at 5000.487 kb on + strand at 5000.487 kb on + strand at 5000.488 kb on - strand at 5000.488 kb on - strand at 5000.503 kb on + strand at 5000.503 kb on + strand at 5000.504 kb on - strand at 5000.504 kb on - strand at 5000.600 kb on + strand at 5000.601 kb on - strand at 5000.636 kb on + strand at 5000.637 kb on - strand at 5000.637 kb on - strand at 5000.707 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Paclitaxel 10 mM remove 4,998,624 + +0.8 4,998,624 + +0.5 4,998,624 + -1.2 4,998,624 + -0.8 4,998,625 - -2.8 4,998,626 + -0.9 4,998,626 + +0.1 4,998,626 + -0.9 4,998,683 + +0.5 4,998,702 + Psyr_4203 0.13 -3.1 4,998,702 + Psyr_4203 0.13 +1.2 4,998,779 - Psyr_4203 0.29 -0.1 4,998,795 + Psyr_4203 0.32 -3.3 4,998,796 - Psyr_4203 0.33 -1.8 4,998,796 - Psyr_4203 0.33 -2.4 4,999,119 + -0.1 4,999,119 + +0.7 4,999,120 - +2.2 4,999,174 + +1.4 4,999,175 - -0.2 4,999,175 - +0.9 4,999,175 - +1.2 4,999,175 - +0.6 4,999,175 - +0.3 4,999,175 - +0.0 4,999,175 - +0.2 4,999,175 - -1.6 4,999,175 - +1.2 4,999,179 - +0.4 4,999,179 - -0.0 4,999,280 + +1.0 4,999,281 - +0.2 4,999,291 - +2.2 4,999,306 + +0.5 4,999,306 + +0.8 4,999,306 + -0.3 4,999,307 - -0.2 4,999,307 - -1.1 4,999,414 + +0.8 4,999,414 + -1.0 4,999,428 + +1.7 4,999,428 + +1.2 4,999,428 + -0.4 4,999,428 + -0.6 4,999,428 + -0.3 4,999,428 + -1.1 4,999,428 + -1.4 4,999,428 + -0.7 4,999,428 + -0.8 4,999,428 + +0.3 4,999,428 + -0.5 4,999,428 + +0.6 4,999,428 + +0.4 4,999,428 + +0.2 4,999,428 + +0.9 4,999,428 + -0.4 4,999,428 + -0.4 4,999,429 - -2.2 4,999,429 - -0.8 4,999,429 - -0.8 4,999,429 - +0.6 4,999,429 - +0.2 4,999,429 - -0.7 4,999,429 - -0.8 4,999,429 - +2.2 4,999,429 - -2.2 4,999,429 - -0.4 4,999,429 - +2.2 4,999,429 - -0.5 4,999,429 - +0.4 4,999,429 - -2.0 4,999,429 - -1.4 4,999,429 - +0.1 4,999,429 - +0.2 4,999,429 - -0.8 4,999,429 - +0.8 4,999,548 + Psyr_4204 0.42 +0.6 4,999,548 + Psyr_4204 0.42 +0.8 4,999,711 + -0.4 4,999,711 + +0.3 4,999,712 - -1.2 4,999,712 - -0.5 4,999,887 + -1.4 4,999,909 + -1.4 4,999,911 + +1.2 5,000,015 + -3.4 5,000,037 + -0.5 5,000,037 + -0.8 5,000,055 + -2.5 5,000,058 + -1.4 5,000,058 + +1.2 5,000,058 + -0.7 5,000,058 + -0.4 5,000,058 + -0.4 5,000,058 + -2.7 5,000,058 + +0.6 5,000,059 - -2.2 5,000,059 - -1.3 5,000,156 + -0.8 5,000,156 + -1.2 5,000,267 + +1.1 5,000,267 + +0.8 5,000,295 + +0.0 5,000,296 - -1.4 5,000,319 + -0.2 5,000,334 - +0.1 5,000,334 - -0.2 5,000,387 + -0.3 5,000,387 + -1.0 5,000,387 + +1.4 5,000,387 + -0.1 5,000,387 + -1.7 5,000,387 + -1.2 5,000,387 + +0.6 5,000,387 + +0.8 5,000,387 + +0.9 5,000,387 + +0.4 5,000,387 + -0.2 5,000,387 + +0.8 5,000,388 - -0.5 5,000,388 - -0.2 5,000,388 - +0.2 5,000,388 - -1.9 5,000,388 - +0.8 5,000,388 - -1.9 5,000,388 - -0.9 5,000,388 - -0.4 5,000,388 - +0.2 5,000,388 - +1.2 5,000,388 - +0.7 5,000,388 - +0.6 5,000,390 + +0.4 5,000,390 + -1.1 5,000,390 + -1.4 5,000,390 + +0.9 5,000,391 - -1.5 5,000,391 - +0.2 5,000,433 + -0.5 5,000,434 - +0.9 5,000,485 + -0.4 5,000,485 + -1.5 5,000,486 - -0.9 5,000,486 - +0.4 5,000,486 - -1.2 5,000,486 - -0.8 5,000,486 - -0.4 5,000,486 - +2.0 5,000,487 + -1.3 5,000,487 + -0.7 5,000,488 - -0.5 5,000,488 - +0.7 5,000,503 + +1.5 5,000,503 + +2.8 5,000,504 - -0.9 5,000,504 - +0.9 5,000,600 + -0.7 5,000,601 - -2.6 5,000,636 + -0.5 5,000,637 - +0.6 5,000,637 - +1.2 5,000,707 - +0.1
Or see this region's nucleotide sequence