Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3925

Experiment: KB with Paclitaxel 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3924 and Psyr_3925 are separated by 154 nucleotidesPsyr_3925 and Psyr_3926 are separated by 87 nucleotidesPsyr_3926 and Psyr_3927 overlap by 4 nucleotides Psyr_3924: Psyr_3924 - conserved hypothetical protein, at 4,666,828 to 4,667,541 _3924 Psyr_3925: Psyr_3925 - conserved hypothetical protein, at 4,667,696 to 4,670,833 _3925 Psyr_3926: Psyr_3926 - transcriptional regulator, PadR family, at 4,670,921 to 4,671,511 _3926 Psyr_3927: Psyr_3927 - Siderophore-interacting protein, at 4,671,508 to 4,672,275 _3927 Position (kb) 4667 4668 4669 4670 4671Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4666.735 kb on + strandat 4666.763 kb on - strandat 4666.797 kb on + strandat 4666.797 kb on + strandat 4666.798 kb on - strandat 4666.798 kb on - strandat 4666.798 kb on - strandat 4666.801 kb on + strandat 4666.824 kb on + strandat 4666.844 kb on + strandat 4666.844 kb on + strandat 4666.969 kb on + strand, within Psyr_3924at 4666.969 kb on + strand, within Psyr_3924at 4666.969 kb on + strand, within Psyr_3924at 4666.970 kb on - strand, within Psyr_3924at 4667.040 kb on + strand, within Psyr_3924at 4667.040 kb on + strand, within Psyr_3924at 4667.041 kb on - strand, within Psyr_3924at 4667.073 kb on + strand, within Psyr_3924at 4667.073 kb on + strand, within Psyr_3924at 4667.074 kb on - strand, within Psyr_3924at 4667.078 kb on - strand, within Psyr_3924at 4667.078 kb on - strand, within Psyr_3924at 4667.125 kb on + strand, within Psyr_3924at 4667.162 kb on - strand, within Psyr_3924at 4667.166 kb on + strand, within Psyr_3924at 4667.167 kb on - strand, within Psyr_3924at 4667.184 kb on + strand, within Psyr_3924at 4667.269 kb on + strand, within Psyr_3924at 4667.269 kb on + strand, within Psyr_3924at 4667.269 kb on + strand, within Psyr_3924at 4667.270 kb on - strand, within Psyr_3924at 4667.270 kb on - strand, within Psyr_3924at 4667.356 kb on + strand, within Psyr_3924at 4667.356 kb on + strand, within Psyr_3924at 4667.357 kb on - strand, within Psyr_3924at 4667.402 kb on - strand, within Psyr_3924at 4667.402 kb on - strand, within Psyr_3924at 4667.402 kb on - strand, within Psyr_3924at 4667.445 kb on + strand, within Psyr_3924at 4667.446 kb on - strand, within Psyr_3924at 4667.473 kb on + strandat 4667.585 kb on + strandat 4667.585 kb on + strandat 4667.585 kb on + strandat 4667.585 kb on + strandat 4667.585 kb on + strandat 4667.669 kb on + strandat 4667.670 kb on - strandat 4667.714 kb on - strandat 4667.782 kb on + strandat 4667.782 kb on + strandat 4667.975 kb on + strandat 4668.012 kb on - strand, within Psyr_3925at 4668.056 kb on + strand, within Psyr_3925at 4668.057 kb on - strand, within Psyr_3925at 4668.101 kb on + strand, within Psyr_3925at 4668.102 kb on - strand, within Psyr_3925at 4668.128 kb on + strand, within Psyr_3925at 4668.128 kb on + strand, within Psyr_3925at 4668.423 kb on - strand, within Psyr_3925at 4668.881 kb on + strand, within Psyr_3925at 4668.882 kb on - strand, within Psyr_3925at 4669.056 kb on - strand, within Psyr_3925at 4669.148 kb on + strand, within Psyr_3925at 4669.289 kb on + strand, within Psyr_3925at 4669.289 kb on + strand, within Psyr_3925at 4669.289 kb on + strand, within Psyr_3925at 4669.290 kb on - strand, within Psyr_3925at 4669.290 kb on - strand, within Psyr_3925at 4669.290 kb on - strand, within Psyr_3925at 4669.290 kb on - strand, within Psyr_3925at 4669.401 kb on - strand, within Psyr_3925at 4669.401 kb on - strand, within Psyr_3925at 4669.463 kb on + strand, within Psyr_3925at 4669.463 kb on + strand, within Psyr_3925at 4669.463 kb on + strand, within Psyr_3925at 4669.463 kb on + strandat 4669.463 kb on + strand, within Psyr_3925at 4669.463 kb on + strand, within Psyr_3925at 4669.463 kb on + strand, within Psyr_3925at 4669.464 kb on - strand, within Psyr_3925at 4669.464 kb on - strand, within Psyr_3925at 4669.519 kb on + strand, within Psyr_3925at 4669.519 kb on + strand, within Psyr_3925at 4669.623 kb on - strand, within Psyr_3925at 4669.631 kb on + strand, within Psyr_3925at 4669.631 kb on + strand, within Psyr_3925at 4669.632 kb on - strand, within Psyr_3925at 4669.632 kb on - strand, within Psyr_3925at 4669.632 kb on - strand, within Psyr_3925at 4669.694 kb on + strand, within Psyr_3925at 4669.694 kb on + strand, within Psyr_3925at 4669.728 kb on + strand, within Psyr_3925at 4669.754 kb on + strand, within Psyr_3925at 4669.754 kb on + strand, within Psyr_3925at 4669.755 kb on - strand, within Psyr_3925at 4669.755 kb on - strand, within Psyr_3925at 4669.842 kb on - strand, within Psyr_3925at 4669.949 kb on + strand, within Psyr_3925at 4669.973 kb on + strand, within Psyr_3925at 4669.973 kb on + strand, within Psyr_3925at 4669.973 kb on + strand, within Psyr_3925at 4669.973 kb on + strand, within Psyr_3925at 4669.973 kb on + strand, within Psyr_3925at 4669.973 kb on + strand, within Psyr_3925at 4669.973 kb on + strand, within Psyr_3925at 4669.973 kb on + strand, within Psyr_3925at 4669.973 kb on + strand, within Psyr_3925at 4669.973 kb on + strand, within Psyr_3925at 4669.973 kb on + strand, within Psyr_3925at 4669.973 kb on + strand, within Psyr_3925at 4669.974 kb on - strand, within Psyr_3925at 4669.974 kb on - strand, within Psyr_3925at 4669.974 kb on - strand, within Psyr_3925at 4669.974 kb on - strand, within Psyr_3925at 4669.974 kb on - strand, within Psyr_3925at 4669.974 kb on - strand, within Psyr_3925at 4669.974 kb on - strand, within Psyr_3925at 4669.994 kb on + strand, within Psyr_3925at 4669.994 kb on + strand, within Psyr_3925at 4669.994 kb on + strand, within Psyr_3925at 4669.995 kb on - strand, within Psyr_3925at 4669.995 kb on - strand, within Psyr_3925at 4669.995 kb on - strand, within Psyr_3925at 4670.108 kb on + strand, within Psyr_3925at 4670.109 kb on - strand, within Psyr_3925at 4670.378 kb on + strand, within Psyr_3925at 4670.378 kb on + strand, within Psyr_3925at 4670.379 kb on - strand, within Psyr_3925at 4670.642 kb on + strandat 4670.642 kb on + strandat 4670.643 kb on - strandat 4670.643 kb on - strandat 4670.769 kb on - strandat 4670.893 kb on - strandat 4670.903 kb on + strandat 4670.932 kb on + strandat 4670.932 kb on + strandat 4670.933 kb on - strandat 4671.070 kb on - strand, within Psyr_3926at 4671.166 kb on + strand, within Psyr_3926at 4671.171 kb on - strand, within Psyr_3926at 4671.171 kb on - strand, within Psyr_3926at 4671.239 kb on + strand, within Psyr_3926at 4671.240 kb on - strand, within Psyr_3926at 4671.610 kb on - strand, within Psyr_3927

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Paclitaxel 10 mM
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4,666,735 + +0.7
4,666,763 - -1.6
4,666,797 + -0.6
4,666,797 + +3.2
4,666,798 - +0.1
4,666,798 - +1.5
4,666,798 - -1.4
4,666,801 + +0.4
4,666,824 + -1.8
4,666,844 + +0.3
4,666,844 + -3.0
4,666,969 + Psyr_3924 0.20 +1.4
4,666,969 + Psyr_3924 0.20 -0.0
4,666,969 + Psyr_3924 0.20 +0.4
4,666,970 - Psyr_3924 0.20 -0.5
4,667,040 + Psyr_3924 0.30 -0.6
4,667,040 + Psyr_3924 0.30 +0.4
4,667,041 - Psyr_3924 0.30 +0.2
4,667,073 + Psyr_3924 0.34 -0.5
4,667,073 + Psyr_3924 0.34 -0.7
4,667,074 - Psyr_3924 0.34 -1.4
4,667,078 - Psyr_3924 0.35 -0.3
4,667,078 - Psyr_3924 0.35 -0.3
4,667,125 + Psyr_3924 0.42 -1.9
4,667,162 - Psyr_3924 0.47 +3.8
4,667,166 + Psyr_3924 0.47 +1.2
4,667,167 - Psyr_3924 0.47 -1.2
4,667,184 + Psyr_3924 0.50 -1.2
4,667,269 + Psyr_3924 0.62 -1.9
4,667,269 + Psyr_3924 0.62 -0.5
4,667,269 + Psyr_3924 0.62 +1.2
4,667,270 - Psyr_3924 0.62 +0.2
4,667,270 - Psyr_3924 0.62 +0.4
4,667,356 + Psyr_3924 0.74 -0.9
4,667,356 + Psyr_3924 0.74 -0.2
4,667,357 - Psyr_3924 0.74 -0.6
4,667,402 - Psyr_3924 0.80 -0.8
4,667,402 - Psyr_3924 0.80 +2.5
4,667,402 - Psyr_3924 0.80 -3.5
4,667,445 + Psyr_3924 0.86 +1.2
4,667,446 - Psyr_3924 0.87 -0.4
4,667,473 + +0.4
4,667,585 + +4.2
4,667,585 + +0.4
4,667,585 + -1.2
4,667,585 + +0.9
4,667,585 + -1.7
4,667,669 + -0.5
4,667,670 - -0.2
4,667,714 - -2.0
4,667,782 + +0.6
4,667,782 + +1.5
4,667,975 + +0.3
4,668,012 - Psyr_3925 0.10 +0.2
4,668,056 + Psyr_3925 0.11 -0.5
4,668,057 - Psyr_3925 0.12 +1.0
4,668,101 + Psyr_3925 0.13 +0.6
4,668,102 - Psyr_3925 0.13 +0.5
4,668,128 + Psyr_3925 0.14 -0.1
4,668,128 + Psyr_3925 0.14 -0.7
4,668,423 - Psyr_3925 0.23 +1.2
4,668,881 + Psyr_3925 0.38 -0.2
4,668,882 - Psyr_3925 0.38 +0.8
4,669,056 - Psyr_3925 0.43 -0.0
4,669,148 + Psyr_3925 0.46 -0.6
4,669,289 + Psyr_3925 0.51 -0.2
4,669,289 + Psyr_3925 0.51 -1.2
4,669,289 + Psyr_3925 0.51 -0.7
4,669,290 - Psyr_3925 0.51 +1.0
4,669,290 - Psyr_3925 0.51 -0.4
4,669,290 - Psyr_3925 0.51 +0.2
4,669,290 - Psyr_3925 0.51 +0.3
4,669,401 - Psyr_3925 0.54 -0.4
4,669,401 - Psyr_3925 0.54 +1.4
4,669,463 + Psyr_3925 0.56 -0.8
4,669,463 + Psyr_3925 0.56 +1.1
4,669,463 + Psyr_3925 0.56 +0.9
4,669,463 + -0.4
4,669,463 + Psyr_3925 0.56 -1.0
4,669,463 + Psyr_3925 0.56 +1.0
4,669,463 + Psyr_3925 0.56 -1.5
4,669,464 - Psyr_3925 0.56 -0.3
4,669,464 - Psyr_3925 0.56 +1.6
4,669,519 + Psyr_3925 0.58 +0.2
4,669,519 + Psyr_3925 0.58 -0.7
4,669,623 - Psyr_3925 0.61 +0.2
4,669,631 + Psyr_3925 0.62 +0.8
4,669,631 + Psyr_3925 0.62 -0.2
4,669,632 - Psyr_3925 0.62 +1.3
4,669,632 - Psyr_3925 0.62 +1.4
4,669,632 - Psyr_3925 0.62 -0.8
4,669,694 + Psyr_3925 0.64 +1.8
4,669,694 + Psyr_3925 0.64 +0.2
4,669,728 + Psyr_3925 0.65 +0.8
4,669,754 + Psyr_3925 0.66 +0.9
4,669,754 + Psyr_3925 0.66 -1.1
4,669,755 - Psyr_3925 0.66 +1.2
4,669,755 - Psyr_3925 0.66 +1.6
4,669,842 - Psyr_3925 0.68 -1.1
4,669,949 + Psyr_3925 0.72 -0.6
4,669,973 + Psyr_3925 0.73 +0.7
4,669,973 + Psyr_3925 0.73 -0.5
4,669,973 + Psyr_3925 0.73 -0.3
4,669,973 + Psyr_3925 0.73 -0.4
4,669,973 + Psyr_3925 0.73 +0.0
4,669,973 + Psyr_3925 0.73 -0.7
4,669,973 + Psyr_3925 0.73 +0.3
4,669,973 + Psyr_3925 0.73 +0.5
4,669,973 + Psyr_3925 0.73 -0.4
4,669,973 + Psyr_3925 0.73 -3.1
4,669,973 + Psyr_3925 0.73 +0.6
4,669,973 + Psyr_3925 0.73 -0.9
4,669,974 - Psyr_3925 0.73 +1.2
4,669,974 - Psyr_3925 0.73 +0.2
4,669,974 - Psyr_3925 0.73 +0.4
4,669,974 - Psyr_3925 0.73 +0.4
4,669,974 - Psyr_3925 0.73 +0.8
4,669,974 - Psyr_3925 0.73 -0.3
4,669,974 - Psyr_3925 0.73 -0.5
4,669,994 + Psyr_3925 0.73 -0.6
4,669,994 + Psyr_3925 0.73 +0.3
4,669,994 + Psyr_3925 0.73 -0.4
4,669,995 - Psyr_3925 0.73 -0.5
4,669,995 - Psyr_3925 0.73 +0.1
4,669,995 - Psyr_3925 0.73 +0.3
4,670,108 + Psyr_3925 0.77 +1.9
4,670,109 - Psyr_3925 0.77 +0.9
4,670,378 + Psyr_3925 0.85 +0.7
4,670,378 + Psyr_3925 0.85 +0.1
4,670,379 - Psyr_3925 0.86 +0.3
4,670,642 + -2.5
4,670,642 + +0.8
4,670,643 - +1.0
4,670,643 - +1.2
4,670,769 - -0.1
4,670,893 - +0.6
4,670,903 + +0.4
4,670,932 + +0.2
4,670,932 + -0.5
4,670,933 - -0.4
4,671,070 - Psyr_3926 0.25 -3.1
4,671,166 + Psyr_3926 0.41 -1.0
4,671,171 - Psyr_3926 0.42 +0.6
4,671,171 - Psyr_3926 0.42 +0.9
4,671,239 + Psyr_3926 0.54 -1.3
4,671,240 - Psyr_3926 0.54 -1.9
4,671,610 - Psyr_3927 0.13 -0.8

Or see this region's nucleotide sequence