Experiment: KB with Paclitaxel 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3526 and Psyr_3527 are separated by 104 nucleotides Psyr_3527 and Psyr_3528 are separated by 75 nucleotides Psyr_3528 and Psyr_3529 are separated by 263 nucleotides
Psyr_3526: Psyr_3526 - transcriptional regulator, LysR family, at 4,202,856 to 4,203,761
_3526
Psyr_3527: Psyr_3527 - glutathione-independent formaldehyde dehydrogenase, at 4,203,866 to 4,205,101
_3527
Psyr_3528: Psyr_3528 - hypothetical protein, at 4,205,177 to 4,205,419
_3528
Psyr_3529: Psyr_3529 - Asp/Glu racemase, at 4,205,683 to 4,206,414
_3529
Position (kb) 4203
4204
4205
4206 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 4203.063 kb on + strand, within Psyr_3526 at 4203.063 kb on + strand, within Psyr_3526 at 4203.063 kb on + strand, within Psyr_3526 at 4203.063 kb on + strand, within Psyr_3526 at 4203.063 kb on + strand, within Psyr_3526 at 4203.210 kb on + strand, within Psyr_3526 at 4203.211 kb on - strand, within Psyr_3526 at 4203.211 kb on - strand, within Psyr_3526 at 4203.407 kb on - strand, within Psyr_3526 at 4203.407 kb on - strand, within Psyr_3526 at 4203.607 kb on + strand, within Psyr_3526 at 4203.607 kb on + strand, within Psyr_3526 at 4203.607 kb on + strand, within Psyr_3526 at 4203.608 kb on - strand, within Psyr_3526 at 4203.740 kb on + strand at 4203.740 kb on + strand at 4203.764 kb on + strand at 4203.764 kb on + strand at 4203.765 kb on - strand at 4203.765 kb on - strand at 4203.881 kb on + strand at 4203.882 kb on - strand at 4203.882 kb on - strand at 4203.882 kb on - strand at 4203.900 kb on + strand at 4203.900 kb on + strand at 4203.901 kb on - strand at 4203.974 kb on - strand at 4203.998 kb on + strand, within Psyr_3527 at 4204.093 kb on - strand, within Psyr_3527 at 4204.263 kb on - strand, within Psyr_3527 at 4204.292 kb on + strand, within Psyr_3527 at 4204.292 kb on + strand, within Psyr_3527 at 4204.292 kb on + strand, within Psyr_3527 at 4204.292 kb on + strand, within Psyr_3527 at 4204.292 kb on + strand, within Psyr_3527 at 4204.293 kb on - strand, within Psyr_3527 at 4204.442 kb on + strand, within Psyr_3527 at 4204.442 kb on + strand, within Psyr_3527 at 4204.442 kb on + strand, within Psyr_3527 at 4204.442 kb on + strand, within Psyr_3527 at 4204.541 kb on + strand, within Psyr_3527 at 4204.542 kb on - strand, within Psyr_3527 at 4204.557 kb on - strand, within Psyr_3527 at 4204.758 kb on + strand, within Psyr_3527 at 4204.758 kb on + strand, within Psyr_3527 at 4204.759 kb on - strand, within Psyr_3527 at 4204.791 kb on + strand, within Psyr_3527 at 4204.794 kb on - strand, within Psyr_3527 at 4204.794 kb on - strand, within Psyr_3527 at 4204.794 kb on - strand, within Psyr_3527 at 4204.794 kb on - strand, within Psyr_3527 at 4205.099 kb on + strand at 4205.099 kb on + strand at 4205.099 kb on + strand at 4205.099 kb on + strand at 4205.099 kb on + strand at 4205.099 kb on + strand at 4205.099 kb on + strand at 4205.099 kb on + strand at 4205.099 kb on + strand at 4205.099 kb on + strand at 4205.099 kb on + strand at 4205.099 kb on + strand at 4205.099 kb on + strand at 4205.100 kb on - strand at 4205.100 kb on - strand at 4205.100 kb on - strand at 4205.100 kb on - strand at 4205.100 kb on - strand at 4205.100 kb on - strand at 4205.100 kb on - strand at 4205.100 kb on - strand at 4205.100 kb on - strand at 4205.100 kb on - strand at 4205.100 kb on - strand at 4205.100 kb on - strand at 4205.100 kb on - strand at 4205.100 kb on - strand at 4205.100 kb on - strand at 4205.100 kb on - strand at 4205.100 kb on - strand at 4205.100 kb on - strand at 4205.100 kb on - strand at 4205.176 kb on + strand at 4205.176 kb on + strand at 4205.176 kb on + strand at 4205.176 kb on + strand at 4205.176 kb on + strand at 4205.176 kb on + strand at 4205.176 kb on + strand at 4205.176 kb on + strand at 4205.176 kb on + strand at 4205.176 kb on + strand at 4205.176 kb on + strand at 4205.176 kb on + strand at 4205.176 kb on + strand at 4205.177 kb on - strand at 4205.177 kb on - strand at 4205.177 kb on - strand at 4205.177 kb on - strand at 4205.177 kb on - strand at 4205.177 kb on - strand at 4205.177 kb on - strand at 4205.177 kb on - strand at 4205.177 kb on - strand at 4205.177 kb on - strand at 4205.177 kb on - strand at 4205.177 kb on - strand at 4205.177 kb on - strand at 4205.177 kb on - strand at 4205.177 kb on - strand at 4205.177 kb on - strand at 4205.177 kb on - strand at 4205.177 kb on - strand at 4205.177 kb on - strand at 4205.177 kb on - strand at 4205.177 kb on - strand at 4205.266 kb on - strand, within Psyr_3528 at 4205.352 kb on - strand, within Psyr_3528 at 4205.352 kb on - strand, within Psyr_3528 at 4205.352 kb on - strand, within Psyr_3528 at 4205.352 kb on - strand, within Psyr_3528 at 4205.352 kb on - strand, within Psyr_3528 at 4205.352 kb on - strand, within Psyr_3528 at 4205.352 kb on - strand, within Psyr_3528 at 4205.352 kb on - strand, within Psyr_3528 at 4205.352 kb on - strand, within Psyr_3528 at 4205.352 kb on - strand, within Psyr_3528 at 4205.352 kb on - strand, within Psyr_3528 at 4205.352 kb on - strand, within Psyr_3528 at 4205.352 kb on - strand, within Psyr_3528 at 4205.352 kb on - strand, within Psyr_3528 at 4205.352 kb on - strand, within Psyr_3528 at 4205.352 kb on - strand, within Psyr_3528 at 4205.438 kb on + strand at 4205.439 kb on - strand at 4205.439 kb on - strand at 4205.439 kb on - strand at 4205.439 kb on - strand at 4205.439 kb on - strand at 4205.439 kb on - strand at 4205.439 kb on - strand at 4205.439 kb on - strand at 4205.439 kb on - strand at 4205.440 kb on + strand at 4205.440 kb on + strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.485 kb on + strand at 4205.485 kb on + strand at 4205.486 kb on - strand at 4205.486 kb on - strand at 4205.616 kb on + strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.697 kb on - strand at 4205.989 kb on - strand, within Psyr_3529 at 4206.007 kb on + strand, within Psyr_3529 at 4206.007 kb on + strand, within Psyr_3529 at 4206.008 kb on - strand, within Psyr_3529 at 4206.008 kb on - strand, within Psyr_3529 at 4206.008 kb on - strand, within Psyr_3529 at 4206.008 kb on - strand, within Psyr_3529
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Paclitaxel 10 mM remove 4,203,063 + Psyr_3526 0.23 +0.6 4,203,063 + Psyr_3526 0.23 +1.0 4,203,063 + Psyr_3526 0.23 +2.5 4,203,063 + Psyr_3526 0.23 +1.1 4,203,063 + Psyr_3526 0.23 +1.5 4,203,210 + Psyr_3526 0.39 -0.6 4,203,211 - Psyr_3526 0.39 -1.2 4,203,211 - Psyr_3526 0.39 -0.6 4,203,407 - Psyr_3526 0.61 +1.4 4,203,407 - Psyr_3526 0.61 -0.4 4,203,607 + Psyr_3526 0.83 -2.0 4,203,607 + Psyr_3526 0.83 -2.8 4,203,607 + Psyr_3526 0.83 +0.4 4,203,608 - Psyr_3526 0.83 +2.0 4,203,740 + -0.8 4,203,740 + -0.6 4,203,764 + -0.0 4,203,764 + -0.6 4,203,765 - +0.3 4,203,765 - -0.6 4,203,881 + -2.4 4,203,882 - -0.0 4,203,882 - -0.0 4,203,882 - -0.2 4,203,900 + +1.0 4,203,900 + +0.8 4,203,901 - -2.5 4,203,974 - +0.7 4,203,998 + Psyr_3527 0.11 +1.4 4,204,093 - Psyr_3527 0.18 -0.8 4,204,263 - Psyr_3527 0.32 +1.8 4,204,292 + Psyr_3527 0.34 -1.5 4,204,292 + Psyr_3527 0.34 -1.7 4,204,292 + Psyr_3527 0.34 -1.5 4,204,292 + Psyr_3527 0.34 -0.3 4,204,292 + Psyr_3527 0.34 -0.0 4,204,293 - Psyr_3527 0.35 -1.0 4,204,442 + Psyr_3527 0.47 -2.5 4,204,442 + Psyr_3527 0.47 -1.1 4,204,442 + Psyr_3527 0.47 -0.3 4,204,442 + Psyr_3527 0.47 +0.4 4,204,541 + Psyr_3527 0.55 -1.3 4,204,542 - Psyr_3527 0.55 -1.3 4,204,557 - Psyr_3527 0.56 -1.6 4,204,758 + Psyr_3527 0.72 -0.4 4,204,758 + Psyr_3527 0.72 -0.9 4,204,759 - Psyr_3527 0.72 -1.0 4,204,791 + Psyr_3527 0.75 -0.6 4,204,794 - Psyr_3527 0.75 -1.1 4,204,794 - Psyr_3527 0.75 -0.3 4,204,794 - Psyr_3527 0.75 -0.1 4,204,794 - Psyr_3527 0.75 +0.5 4,205,099 + +1.0 4,205,099 + +4.6 4,205,099 + -0.2 4,205,099 + -0.8 4,205,099 + -3.0 4,205,099 + -0.6 4,205,099 + -2.6 4,205,099 + +1.0 4,205,099 + +0.5 4,205,099 + -1.5 4,205,099 + -1.8 4,205,099 + -0.6 4,205,099 + +1.1 4,205,100 - -0.6 4,205,100 - +1.1 4,205,100 - +0.6 4,205,100 - -1.4 4,205,100 - -0.3 4,205,100 - +0.4 4,205,100 - -0.9 4,205,100 - -0.7 4,205,100 - -1.7 4,205,100 - +0.3 4,205,100 - +0.3 4,205,100 - +0.4 4,205,100 - -2.1 4,205,100 - +1.0 4,205,100 - -0.8 4,205,100 - -1.8 4,205,100 - +0.8 4,205,100 - -0.3 4,205,100 - +0.1 4,205,176 + +0.3 4,205,176 + -1.8 4,205,176 + +1.1 4,205,176 + +0.7 4,205,176 + +2.0 4,205,176 + -0.2 4,205,176 + +3.0 4,205,176 + +2.6 4,205,176 + -1.5 4,205,176 + -0.1 4,205,176 + -0.1 4,205,176 + -1.6 4,205,176 + +1.2 4,205,177 - -0.5 4,205,177 - +2.7 4,205,177 - -0.1 4,205,177 - -0.2 4,205,177 - +2.0 4,205,177 - -0.2 4,205,177 - +1.5 4,205,177 - -0.8 4,205,177 - -0.1 4,205,177 - -0.6 4,205,177 - +1.0 4,205,177 - +0.1 4,205,177 - -1.0 4,205,177 - -0.4 4,205,177 - -0.2 4,205,177 - +2.3 4,205,177 - -0.5 4,205,177 - +0.4 4,205,177 - +1.1 4,205,177 - +2.2 4,205,177 - -2.8 4,205,266 - Psyr_3528 0.37 -1.6 4,205,352 - Psyr_3528 0.72 -0.5 4,205,352 - Psyr_3528 0.72 -1.6 4,205,352 - Psyr_3528 0.72 +0.2 4,205,352 - Psyr_3528 0.72 -0.2 4,205,352 - Psyr_3528 0.72 +0.9 4,205,352 - Psyr_3528 0.72 -0.7 4,205,352 - Psyr_3528 0.72 +1.0 4,205,352 - Psyr_3528 0.72 -0.2 4,205,352 - Psyr_3528 0.72 -0.4 4,205,352 - Psyr_3528 0.72 -0.6 4,205,352 - Psyr_3528 0.72 -0.4 4,205,352 - Psyr_3528 0.72 -0.1 4,205,352 - Psyr_3528 0.72 -0.3 4,205,352 - Psyr_3528 0.72 +0.1 4,205,352 - Psyr_3528 0.72 +0.1 4,205,352 - Psyr_3528 0.72 -0.8 4,205,438 + -0.9 4,205,439 - +1.6 4,205,439 - +0.2 4,205,439 - -0.8 4,205,439 - -1.0 4,205,439 - +0.7 4,205,439 - +1.2 4,205,439 - -0.7 4,205,439 - -0.6 4,205,439 - -0.0 4,205,440 + +0.2 4,205,440 + -1.8 4,205,441 - +0.9 4,205,441 - -1.2 4,205,441 - +0.1 4,205,441 - +1.8 4,205,441 - +1.1 4,205,441 - -0.1 4,205,441 - +0.2 4,205,441 - +2.0 4,205,441 - -1.8 4,205,441 - -1.2 4,205,441 - -1.5 4,205,441 - -2.2 4,205,441 - -0.9 4,205,441 - -0.7 4,205,441 - +0.5 4,205,441 - +1.0 4,205,441 - +1.6 4,205,441 - +0.1 4,205,441 - -0.6 4,205,441 - +0.7 4,205,441 - -1.6 4,205,441 - -0.3 4,205,441 - +0.1 4,205,441 - -0.6 4,205,441 - +0.2 4,205,441 - -0.6 4,205,441 - +1.1 4,205,441 - -0.2 4,205,441 - -0.4 4,205,441 - -0.6 4,205,441 - -0.8 4,205,441 - -0.0 4,205,441 - -2.6 4,205,441 - -0.2 4,205,485 + -0.1 4,205,485 + -0.1 4,205,486 - +5.2 4,205,486 - +0.9 4,205,616 + +0.7 4,205,617 - -1.2 4,205,617 - +1.5 4,205,617 - +2.0 4,205,617 - +1.4 4,205,617 - -0.5 4,205,617 - +2.2 4,205,617 - -0.6 4,205,617 - +0.2 4,205,617 - +1.4 4,205,617 - +0.2 4,205,617 - -1.3 4,205,617 - +2.6 4,205,617 - -0.6 4,205,617 - -0.8 4,205,617 - +0.7 4,205,617 - -1.1 4,205,617 - +0.5 4,205,617 - +4.0 4,205,617 - +1.4 4,205,617 - -1.0 4,205,617 - -2.3 4,205,617 - +0.8 4,205,617 - +0.3 4,205,617 - +1.0 4,205,617 - +1.1 4,205,617 - -0.7 4,205,697 - +0.1 4,205,989 - Psyr_3529 0.42 +1.0 4,206,007 + Psyr_3529 0.44 -0.6 4,206,007 + Psyr_3529 0.44 +0.0 4,206,008 - Psyr_3529 0.44 -0.1 4,206,008 - Psyr_3529 0.44 +0.3 4,206,008 - Psyr_3529 0.44 +1.0 4,206,008 - Psyr_3529 0.44 +1.4
Or see this region's nucleotide sequence