Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1623

Experiment: KB with Paclitaxel 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1622 and Psyr_1623 are separated by 287 nucleotidesPsyr_1623 and Psyr_1624 are separated by 2 nucleotidesPsyr_1624 and Psyr_1625 are separated by 144 nucleotides Psyr_1622: Psyr_1622 - regulatory protein, LuxR:Autoinducer-binding protein, at 1,823,413 to 1,824,156 _1622 Psyr_1623: Psyr_1623 - Pyruvate dehydrogenase (lipoamide), at 1,824,444 to 1,825,547 _1623 Psyr_1624: Psyr_1624 - transcriptional regulator, MarR family, at 1,825,550 to 1,826,002 _1624 Psyr_1625: Psyr_1625 - 2-oxo-acid dehydrogenase E1 component homodimeric type, at 1,826,147 to 1,828,816 _1625 Position (kb) 1824 1825 1826Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1823.546 kb on + strand, within Psyr_1622at 1823.582 kb on - strand, within Psyr_1622at 1823.810 kb on + strand, within Psyr_1622at 1823.810 kb on + strand, within Psyr_1622at 1823.810 kb on + strand, within Psyr_1622at 1823.810 kb on + strand, within Psyr_1622at 1823.811 kb on - strand, within Psyr_1622at 1823.895 kb on + strand, within Psyr_1622at 1823.896 kb on - strand, within Psyr_1622at 1823.925 kb on + strand, within Psyr_1622at 1823.933 kb on + strand, within Psyr_1622at 1823.933 kb on + strand, within Psyr_1622at 1823.933 kb on + strand, within Psyr_1622at 1823.933 kb on + strand, within Psyr_1622at 1823.934 kb on - strand, within Psyr_1622at 1823.934 kb on - strand, within Psyr_1622at 1823.947 kb on - strand, within Psyr_1622at 1823.949 kb on - strand, within Psyr_1622at 1823.949 kb on - strand, within Psyr_1622at 1823.949 kb on - strand, within Psyr_1622at 1823.949 kb on - strand, within Psyr_1622at 1823.972 kb on + strand, within Psyr_1622at 1823.972 kb on + strand, within Psyr_1622at 1823.972 kb on + strand, within Psyr_1622at 1824.023 kb on + strand, within Psyr_1622at 1824.024 kb on - strand, within Psyr_1622at 1824.024 kb on - strand, within Psyr_1622at 1824.029 kb on + strand, within Psyr_1622at 1824.029 kb on + strand, within Psyr_1622at 1824.029 kb on + strand, within Psyr_1622at 1824.029 kb on + strand, within Psyr_1622at 1824.030 kb on - strand, within Psyr_1622at 1824.030 kb on - strand, within Psyr_1622at 1824.030 kb on - strand, within Psyr_1622at 1824.030 kb on - strand, within Psyr_1622at 1824.046 kb on - strand, within Psyr_1622at 1824.144 kb on + strandat 1824.158 kb on + strandat 1824.158 kb on + strandat 1824.158 kb on + strandat 1824.158 kb on + strandat 1824.158 kb on + strandat 1824.158 kb on + strandat 1824.158 kb on + strandat 1824.158 kb on + strandat 1824.159 kb on - strandat 1824.159 kb on - strandat 1824.159 kb on - strandat 1824.159 kb on - strandat 1824.159 kb on - strandat 1824.161 kb on + strandat 1824.162 kb on - strandat 1824.162 kb on - strandat 1824.162 kb on - strandat 1824.170 kb on + strandat 1824.170 kb on + strandat 1824.171 kb on - strandat 1824.225 kb on + strandat 1824.286 kb on + strandat 1824.286 kb on + strandat 1824.374 kb on - strandat 1824.390 kb on + strandat 1824.390 kb on + strandat 1824.390 kb on + strandat 1824.391 kb on - strandat 1824.391 kb on - strandat 1824.391 kb on - strandat 1824.391 kb on - strandat 1824.439 kb on + strandat 1824.439 kb on + strandat 1824.439 kb on + strandat 1824.440 kb on - strandat 1824.732 kb on + strand, within Psyr_1623at 1824.732 kb on + strand, within Psyr_1623at 1824.732 kb on + strand, within Psyr_1623at 1824.732 kb on + strand, within Psyr_1623at 1824.733 kb on - strand, within Psyr_1623at 1824.957 kb on + strand, within Psyr_1623at 1824.958 kb on - strand, within Psyr_1623at 1824.958 kb on - strand, within Psyr_1623at 1824.981 kb on + strand, within Psyr_1623at 1824.981 kb on + strand, within Psyr_1623at 1824.981 kb on + strand, within Psyr_1623at 1824.982 kb on - strand, within Psyr_1623at 1824.982 kb on - strand, within Psyr_1623at 1824.982 kb on - strand, within Psyr_1623at 1824.984 kb on + strand, within Psyr_1623at 1824.984 kb on + strand, within Psyr_1623at 1824.984 kb on + strand, within Psyr_1623at 1824.984 kb on + strand, within Psyr_1623at 1824.984 kb on + strand, within Psyr_1623at 1824.984 kb on + strand, within Psyr_1623at 1824.984 kb on + strand, within Psyr_1623at 1824.984 kb on + strand, within Psyr_1623at 1824.984 kb on + strand, within Psyr_1623at 1824.985 kb on - strand, within Psyr_1623at 1824.985 kb on - strand, within Psyr_1623at 1824.985 kb on - strand, within Psyr_1623at 1824.985 kb on - strand, within Psyr_1623at 1824.985 kb on - strand, within Psyr_1623at 1824.985 kb on - strand, within Psyr_1623at 1824.985 kb on - strand, within Psyr_1623at 1824.985 kb on - strand, within Psyr_1623at 1824.985 kb on - strand, within Psyr_1623at 1824.985 kb on - strandat 1824.985 kb on - strand, within Psyr_1623at 1824.985 kb on - strand, within Psyr_1623at 1824.985 kb on - strand, within Psyr_1623at 1824.985 kb on - strand, within Psyr_1623at 1825.108 kb on + strand, within Psyr_1623at 1825.212 kb on + strand, within Psyr_1623at 1825.212 kb on + strand, within Psyr_1623at 1825.212 kb on + strand, within Psyr_1623at 1825.212 kb on + strand, within Psyr_1623at 1825.212 kb on + strand, within Psyr_1623at 1825.212 kb on + strand, within Psyr_1623at 1825.212 kb on + strand, within Psyr_1623at 1825.213 kb on - strand, within Psyr_1623at 1825.213 kb on - strand, within Psyr_1623at 1825.213 kb on - strand, within Psyr_1623at 1825.214 kb on + strand, within Psyr_1623at 1825.462 kb on + strandat 1825.807 kb on - strand, within Psyr_1624at 1825.807 kb on - strand, within Psyr_1624at 1825.891 kb on - strand, within Psyr_1624at 1825.891 kb on - strand, within Psyr_1624at 1825.891 kb on - strand, within Psyr_1624at 1825.899 kb on + strand, within Psyr_1624at 1825.900 kb on - strand, within Psyr_1624at 1825.980 kb on + strandat 1825.981 kb on + strandat 1825.982 kb on - strandat 1826.038 kb on + strandat 1826.039 kb on - strandat 1826.039 kb on - strandat 1826.135 kb on + strandat 1826.136 kb on - strandat 1826.136 kb on - strandat 1826.252 kb on + strandat 1826.304 kb on - strandat 1826.324 kb on + strandat 1826.324 kb on + strandat 1826.325 kb on - strandat 1826.325 kb on - strandat 1826.389 kb on + strandat 1826.389 kb on + strandat 1826.389 kb on + strandat 1826.474 kb on + strand, within Psyr_1625at 1826.474 kb on + strand, within Psyr_1625at 1826.495 kb on + strand, within Psyr_1625at 1826.495 kb on + strand, within Psyr_1625at 1826.496 kb on - strand, within Psyr_1625at 1826.496 kb on - strand, within Psyr_1625at 1826.496 kb on - strand, within Psyr_1625

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Paclitaxel 10 mM
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1,823,546 + Psyr_1622 0.18 -0.7
1,823,582 - Psyr_1622 0.23 +0.3
1,823,810 + Psyr_1622 0.53 -0.0
1,823,810 + Psyr_1622 0.53 -0.2
1,823,810 + Psyr_1622 0.53 -0.5
1,823,810 + Psyr_1622 0.53 -1.7
1,823,811 - Psyr_1622 0.53 +0.5
1,823,895 + Psyr_1622 0.65 -0.8
1,823,896 - Psyr_1622 0.65 +1.0
1,823,925 + Psyr_1622 0.69 +0.6
1,823,933 + Psyr_1622 0.70 +0.9
1,823,933 + Psyr_1622 0.70 -1.7
1,823,933 + Psyr_1622 0.70 -1.1
1,823,933 + Psyr_1622 0.70 +1.2
1,823,934 - Psyr_1622 0.70 +0.4
1,823,934 - Psyr_1622 0.70 +0.2
1,823,947 - Psyr_1622 0.72 -0.9
1,823,949 - Psyr_1622 0.72 -0.3
1,823,949 - Psyr_1622 0.72 +0.8
1,823,949 - Psyr_1622 0.72 +2.8
1,823,949 - Psyr_1622 0.72 +0.1
1,823,972 + Psyr_1622 0.75 -0.4
1,823,972 + Psyr_1622 0.75 -0.7
1,823,972 + Psyr_1622 0.75 -1.6
1,824,023 + Psyr_1622 0.82 -0.7
1,824,024 - Psyr_1622 0.82 -2.1
1,824,024 - Psyr_1622 0.82 +0.2
1,824,029 + Psyr_1622 0.83 -0.3
1,824,029 + Psyr_1622 0.83 -0.4
1,824,029 + Psyr_1622 0.83 +1.6
1,824,029 + Psyr_1622 0.83 +2.0
1,824,030 - Psyr_1622 0.83 -0.9
1,824,030 - Psyr_1622 0.83 -0.1
1,824,030 - Psyr_1622 0.83 -0.3
1,824,030 - Psyr_1622 0.83 -1.5
1,824,046 - Psyr_1622 0.85 -1.0
1,824,144 + +1.3
1,824,158 + -1.1
1,824,158 + +0.8
1,824,158 + +1.2
1,824,158 + -1.0
1,824,158 + +0.3
1,824,158 + -0.8
1,824,158 + +1.4
1,824,158 + +0.8
1,824,159 - -1.6
1,824,159 - +0.7
1,824,159 - +1.0
1,824,159 - +0.4
1,824,159 - +1.5
1,824,161 + +0.5
1,824,162 - -0.2
1,824,162 - +0.6
1,824,162 - -0.0
1,824,170 + +3.5
1,824,170 + +0.1
1,824,171 - -0.3
1,824,225 + -0.6
1,824,286 + -1.3
1,824,286 + -0.7
1,824,374 - +0.3
1,824,390 + -0.8
1,824,390 + +0.4
1,824,390 + +1.8
1,824,391 - -0.1
1,824,391 - +0.6
1,824,391 - -0.7
1,824,391 - -0.8
1,824,439 + +0.5
1,824,439 + +2.3
1,824,439 + -0.4
1,824,440 - -0.0
1,824,732 + Psyr_1623 0.26 -0.6
1,824,732 + Psyr_1623 0.26 +0.9
1,824,732 + Psyr_1623 0.26 +1.2
1,824,732 + Psyr_1623 0.26 +1.1
1,824,733 - Psyr_1623 0.26 -0.4
1,824,957 + Psyr_1623 0.46 +0.6
1,824,958 - Psyr_1623 0.47 -0.7
1,824,958 - Psyr_1623 0.47 +0.8
1,824,981 + Psyr_1623 0.49 -1.6
1,824,981 + Psyr_1623 0.49 -0.4
1,824,981 + Psyr_1623 0.49 -1.4
1,824,982 - Psyr_1623 0.49 +0.8
1,824,982 - Psyr_1623 0.49 -0.4
1,824,982 - Psyr_1623 0.49 -0.9
1,824,984 + Psyr_1623 0.49 -1.3
1,824,984 + Psyr_1623 0.49 -1.0
1,824,984 + Psyr_1623 0.49 -0.2
1,824,984 + Psyr_1623 0.49 -0.5
1,824,984 + Psyr_1623 0.49 +0.0
1,824,984 + Psyr_1623 0.49 +0.4
1,824,984 + Psyr_1623 0.49 +3.6
1,824,984 + Psyr_1623 0.49 -0.6
1,824,984 + Psyr_1623 0.49 +0.0
1,824,985 - Psyr_1623 0.49 -1.7
1,824,985 - Psyr_1623 0.49 +1.3
1,824,985 - Psyr_1623 0.49 -0.9
1,824,985 - Psyr_1623 0.49 +0.8
1,824,985 - Psyr_1623 0.49 -0.0
1,824,985 - Psyr_1623 0.49 -2.9
1,824,985 - Psyr_1623 0.49 +2.2
1,824,985 - Psyr_1623 0.49 +0.6
1,824,985 - Psyr_1623 0.49 -2.9
1,824,985 - +1.2
1,824,985 - Psyr_1623 0.49 +0.7
1,824,985 - Psyr_1623 0.49 +2.6
1,824,985 - Psyr_1623 0.49 +0.7
1,824,985 - Psyr_1623 0.49 +3.2
1,825,108 + Psyr_1623 0.60 +2.2
1,825,212 + Psyr_1623 0.70 +1.5
1,825,212 + Psyr_1623 0.70 +1.8
1,825,212 + Psyr_1623 0.70 -0.4
1,825,212 + Psyr_1623 0.70 -1.3
1,825,212 + Psyr_1623 0.70 -0.4
1,825,212 + Psyr_1623 0.70 -1.1
1,825,212 + Psyr_1623 0.70 -0.7
1,825,213 - Psyr_1623 0.70 +0.1
1,825,213 - Psyr_1623 0.70 +2.8
1,825,213 - Psyr_1623 0.70 +0.1
1,825,214 + Psyr_1623 0.70 -0.7
1,825,462 + +1.4
1,825,807 - Psyr_1624 0.57 +0.2
1,825,807 - Psyr_1624 0.57 -2.1
1,825,891 - Psyr_1624 0.75 -0.5
1,825,891 - Psyr_1624 0.75 -1.2
1,825,891 - Psyr_1624 0.75 +0.4
1,825,899 + Psyr_1624 0.77 +0.2
1,825,900 - Psyr_1624 0.77 +1.0
1,825,980 + +0.2
1,825,981 + +3.2
1,825,982 - +1.8
1,826,038 + +2.2
1,826,039 - -3.3
1,826,039 - +1.0
1,826,135 + +1.2
1,826,136 - -3.6
1,826,136 - +1.2
1,826,252 + +1.4
1,826,304 - +0.7
1,826,324 + -0.6
1,826,324 + +0.6
1,826,325 - -2.1
1,826,325 - +1.2
1,826,389 + +0.4
1,826,389 + +0.6
1,826,389 + +0.2
1,826,474 + Psyr_1625 0.12 -1.8
1,826,474 + Psyr_1625 0.12 +1.5
1,826,495 + Psyr_1625 0.13 -0.1
1,826,495 + Psyr_1625 0.13 +2.1
1,826,496 - Psyr_1625 0.13 +0.1
1,826,496 - Psyr_1625 0.13 +1.6
1,826,496 - Psyr_1625 0.13 -1.1

Or see this region's nucleotide sequence