Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1574

Experiment: KB with Paclitaxel 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_1572 and Psyr_1573 are separated by 66 nucleotidesPsyr_1573 and Psyr_1574 are separated by 76 nucleotidesPsyr_1574 and Psyr_1575 are separated by 132 nucleotidesPsyr_1575 and Psyr_1576 are separated by 76 nucleotides Psyr_1572: Psyr_1572 - HNH endonuclease, at 1,767,589 to 1,767,963 _1572 Psyr_1573: Psyr_1573 - cyclic nucleotide-binding protein, at 1,768,030 to 1,768,506 _1573 Psyr_1574: Psyr_1574 - oligopeptidase B, Serine peptidase, MEROPS family S09A, at 1,768,583 to 1,770,643 _1574 Psyr_1575: Psyr_1575 - conserved hypothetical protein, at 1,770,776 to 1,771,252 _1575 Psyr_1576: Psyr_1576 - Glutamine amidotransferase, class-II, at 1,771,329 to 1,772,129 _1576 Position (kb) 1768 1769 1770 1771Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1767.591 kb on - strandat 1767.591 kb on - strandat 1767.683 kb on + strand, within Psyr_1572at 1767.683 kb on + strand, within Psyr_1572at 1767.684 kb on - strand, within Psyr_1572at 1767.684 kb on - strand, within Psyr_1572at 1767.725 kb on + strand, within Psyr_1572at 1767.726 kb on - strand, within Psyr_1572at 1767.794 kb on - strand, within Psyr_1572at 1767.794 kb on - strand, within Psyr_1572at 1767.794 kb on - strand, within Psyr_1572at 1767.858 kb on - strand, within Psyr_1572at 1767.858 kb on - strand, within Psyr_1572at 1768.048 kb on + strandat 1768.048 kb on + strandat 1768.048 kb on + strandat 1768.048 kb on + strandat 1768.048 kb on + strandat 1768.049 kb on - strandat 1768.049 kb on - strandat 1768.049 kb on - strandat 1768.049 kb on - strandat 1768.049 kb on - strandat 1768.049 kb on - strandat 1768.171 kb on + strand, within Psyr_1573at 1768.171 kb on + strand, within Psyr_1573at 1768.171 kb on + strand, within Psyr_1573at 1768.195 kb on - strand, within Psyr_1573at 1768.195 kb on - strand, within Psyr_1573at 1768.408 kb on + strand, within Psyr_1573at 1768.414 kb on - strand, within Psyr_1573at 1768.509 kb on + strandat 1768.509 kb on + strandat 1768.509 kb on + strandat 1768.509 kb on + strandat 1768.509 kb on + strandat 1768.510 kb on - strandat 1768.510 kb on - strandat 1768.510 kb on - strandat 1768.510 kb on - strandat 1768.510 kb on - strandat 1768.510 kb on - strandat 1768.510 kb on - strandat 1768.510 kb on - strandat 1768.510 kb on - strandat 1768.510 kb on - strandat 1768.518 kb on + strandat 1768.556 kb on + strandat 1768.557 kb on - strandat 1768.557 kb on - strandat 1768.557 kb on - strandat 1768.557 kb on - strandat 1768.560 kb on - strandat 1768.560 kb on - strandat 1768.560 kb on - strandat 1768.560 kb on - strandat 1768.560 kb on - strandat 1768.601 kb on + strandat 1768.601 kb on + strandat 1768.613 kb on - strandat 1768.613 kb on - strandat 1768.761 kb on + strandat 1768.761 kb on + strandat 1768.860 kb on + strand, within Psyr_1574at 1768.943 kb on + strand, within Psyr_1574at 1768.943 kb on + strand, within Psyr_1574at 1768.943 kb on + strand, within Psyr_1574at 1768.943 kb on + strand, within Psyr_1574at 1768.943 kb on + strand, within Psyr_1574at 1768.944 kb on - strand, within Psyr_1574at 1768.944 kb on - strand, within Psyr_1574at 1768.944 kb on - strand, within Psyr_1574at 1768.944 kb on - strand, within Psyr_1574at 1768.944 kb on - strand, within Psyr_1574at 1769.284 kb on - strand, within Psyr_1574at 1769.284 kb on - strand, within Psyr_1574at 1769.382 kb on + strand, within Psyr_1574at 1769.382 kb on + strand, within Psyr_1574at 1769.382 kb on + strand, within Psyr_1574at 1769.383 kb on - strand, within Psyr_1574at 1769.383 kb on - strand, within Psyr_1574at 1769.383 kb on - strand, within Psyr_1574at 1769.383 kb on - strand, within Psyr_1574at 1769.383 kb on - strand, within Psyr_1574at 1769.490 kb on + strand, within Psyr_1574at 1769.538 kb on + strand, within Psyr_1574at 1769.538 kb on + strand, within Psyr_1574at 1769.538 kb on + strand, within Psyr_1574at 1769.538 kb on + strand, within Psyr_1574at 1769.538 kb on + strand, within Psyr_1574at 1769.538 kb on + strand, within Psyr_1574at 1769.538 kb on + strand, within Psyr_1574at 1769.538 kb on + strand, within Psyr_1574at 1769.539 kb on - strand, within Psyr_1574at 1769.539 kb on - strand, within Psyr_1574at 1769.539 kb on - strand, within Psyr_1574at 1769.539 kb on - strand, within Psyr_1574at 1769.539 kb on - strand, within Psyr_1574at 1769.539 kb on - strand, within Psyr_1574at 1769.539 kb on - strand, within Psyr_1574at 1769.539 kb on - strand, within Psyr_1574at 1769.539 kb on - strand, within Psyr_1574at 1769.548 kb on - strand, within Psyr_1574at 1769.597 kb on + strand, within Psyr_1574at 1769.597 kb on + strand, within Psyr_1574at 1769.597 kb on + strand, within Psyr_1574at 1769.597 kb on + strand, within Psyr_1574at 1769.597 kb on + strand, within Psyr_1574at 1769.598 kb on - strand, within Psyr_1574at 1769.598 kb on - strand, within Psyr_1574at 1769.751 kb on + strand, within Psyr_1574at 1769.833 kb on - strand, within Psyr_1574at 1770.031 kb on + strand, within Psyr_1574at 1770.174 kb on + strand, within Psyr_1574at 1770.174 kb on + strand, within Psyr_1574at 1770.174 kb on + strand, within Psyr_1574at 1770.175 kb on - strand, within Psyr_1574at 1770.183 kb on + strand, within Psyr_1574at 1770.184 kb on - strand, within Psyr_1574at 1770.369 kb on + strand, within Psyr_1574at 1770.370 kb on - strand, within Psyr_1574at 1770.370 kb on - strand, within Psyr_1574at 1770.396 kb on + strand, within Psyr_1574at 1770.397 kb on - strand, within Psyr_1574at 1770.397 kb on - strand, within Psyr_1574at 1770.399 kb on + strand, within Psyr_1574at 1770.405 kb on + strand, within Psyr_1574at 1770.406 kb on - strand, within Psyr_1574at 1770.406 kb on - strand, within Psyr_1574at 1770.580 kb on - strandat 1770.659 kb on - strandat 1770.678 kb on + strandat 1770.743 kb on - strandat 1770.763 kb on + strandat 1770.791 kb on + strandat 1770.920 kb on - strand, within Psyr_1575at 1770.920 kb on - strand, within Psyr_1575at 1770.920 kb on - strand, within Psyr_1575at 1771.009 kb on + strand, within Psyr_1575at 1771.010 kb on - strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.045 kb on + strand, within Psyr_1575at 1771.045 kb on + strand, within Psyr_1575at 1771.045 kb on + strand, within Psyr_1575at 1771.045 kb on + strand, within Psyr_1575at 1771.045 kb on + strand, within Psyr_1575at 1771.045 kb on + strand, within Psyr_1575at 1771.045 kb on + strand, within Psyr_1575at 1771.045 kb on + strand, within Psyr_1575at 1771.045 kb on + strand, within Psyr_1575at 1771.046 kb on - strand, within Psyr_1575at 1771.046 kb on - strand, within Psyr_1575at 1771.046 kb on - strand, within Psyr_1575at 1771.046 kb on - strand, within Psyr_1575at 1771.046 kb on - strand, within Psyr_1575at 1771.046 kb on - strand, within Psyr_1575at 1771.046 kb on - strand, within Psyr_1575at 1771.187 kb on + strand, within Psyr_1575at 1771.251 kb on - strandat 1771.339 kb on + strandat 1771.449 kb on + strand, within Psyr_1576at 1771.450 kb on - strand, within Psyr_1576at 1771.450 kb on - strand, within Psyr_1576at 1771.559 kb on + strand, within Psyr_1576at 1771.632 kb on - strand, within Psyr_1576

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Paclitaxel 10 mM
remove
1,767,591 - +0.6
1,767,591 - +0.7
1,767,683 + Psyr_1572 0.25 +2.4
1,767,683 + Psyr_1572 0.25 -0.7
1,767,684 - Psyr_1572 0.25 -0.0
1,767,684 - Psyr_1572 0.25 +0.9
1,767,725 + Psyr_1572 0.36 +0.3
1,767,726 - Psyr_1572 0.37 +0.0
1,767,794 - Psyr_1572 0.55 -2.7
1,767,794 - Psyr_1572 0.55 +2.0
1,767,794 - Psyr_1572 0.55 -0.3
1,767,858 - Psyr_1572 0.72 +0.0
1,767,858 - Psyr_1572 0.72 +0.6
1,768,048 + +0.9
1,768,048 + +0.5
1,768,048 + -1.0
1,768,048 + +0.3
1,768,048 + -2.8
1,768,049 - -1.0
1,768,049 - -2.2
1,768,049 - +1.0
1,768,049 - -1.6
1,768,049 - -1.6
1,768,049 - +0.0
1,768,171 + Psyr_1573 0.30 -0.8
1,768,171 + Psyr_1573 0.30 -0.4
1,768,171 + Psyr_1573 0.30 +0.1
1,768,195 - Psyr_1573 0.35 +0.8
1,768,195 - Psyr_1573 0.35 -0.8
1,768,408 + Psyr_1573 0.79 +0.9
1,768,414 - Psyr_1573 0.81 +0.8
1,768,509 + -0.4
1,768,509 + -0.5
1,768,509 + +0.9
1,768,509 + -0.2
1,768,509 + +0.3
1,768,510 - -0.1
1,768,510 - +0.5
1,768,510 - +0.2
1,768,510 - +0.6
1,768,510 - -0.2
1,768,510 - -0.4
1,768,510 - -1.3
1,768,510 - +0.3
1,768,510 - +0.1
1,768,510 - -1.6
1,768,518 + +1.2
1,768,556 + -1.2
1,768,557 - -0.6
1,768,557 - +0.6
1,768,557 - +1.2
1,768,557 - +1.9
1,768,560 - -0.2
1,768,560 - +0.2
1,768,560 - -0.1
1,768,560 - -1.1
1,768,560 - +0.7
1,768,601 + -2.4
1,768,601 + +0.5
1,768,613 - +0.1
1,768,613 - +0.9
1,768,761 + -0.6
1,768,761 + +0.6
1,768,860 + Psyr_1574 0.13 +1.2
1,768,943 + Psyr_1574 0.17 +1.8
1,768,943 + Psyr_1574 0.17 -2.0
1,768,943 + Psyr_1574 0.17 +0.2
1,768,943 + Psyr_1574 0.17 +1.0
1,768,943 + Psyr_1574 0.17 +0.5
1,768,944 - Psyr_1574 0.18 -1.0
1,768,944 - Psyr_1574 0.18 -0.4
1,768,944 - Psyr_1574 0.18 -0.5
1,768,944 - Psyr_1574 0.18 -4.0
1,768,944 - Psyr_1574 0.18 -0.6
1,769,284 - Psyr_1574 0.34 +0.1
1,769,284 - Psyr_1574 0.34 -0.5
1,769,382 + Psyr_1574 0.39 +0.7
1,769,382 + Psyr_1574 0.39 +0.9
1,769,382 + Psyr_1574 0.39 +0.1
1,769,383 - Psyr_1574 0.39 +0.2
1,769,383 - Psyr_1574 0.39 +1.1
1,769,383 - Psyr_1574 0.39 +1.9
1,769,383 - Psyr_1574 0.39 +0.6
1,769,383 - Psyr_1574 0.39 +2.5
1,769,490 + Psyr_1574 0.44 +1.3
1,769,538 + Psyr_1574 0.46 -1.4
1,769,538 + Psyr_1574 0.46 -0.3
1,769,538 + Psyr_1574 0.46 -2.2
1,769,538 + Psyr_1574 0.46 -0.6
1,769,538 + Psyr_1574 0.46 -0.7
1,769,538 + Psyr_1574 0.46 +0.6
1,769,538 + Psyr_1574 0.46 -0.4
1,769,538 + Psyr_1574 0.46 +0.4
1,769,539 - Psyr_1574 0.46 +1.4
1,769,539 - Psyr_1574 0.46 +0.7
1,769,539 - Psyr_1574 0.46 -0.3
1,769,539 - Psyr_1574 0.46 -0.1
1,769,539 - Psyr_1574 0.46 -1.4
1,769,539 - Psyr_1574 0.46 +0.5
1,769,539 - Psyr_1574 0.46 +0.4
1,769,539 - Psyr_1574 0.46 +0.6
1,769,539 - Psyr_1574 0.46 +2.8
1,769,548 - Psyr_1574 0.47 +0.7
1,769,597 + Psyr_1574 0.49 -3.0
1,769,597 + Psyr_1574 0.49 -1.2
1,769,597 + Psyr_1574 0.49 -0.2
1,769,597 + Psyr_1574 0.49 +1.0
1,769,597 + Psyr_1574 0.49 -0.2
1,769,598 - Psyr_1574 0.49 +0.6
1,769,598 - Psyr_1574 0.49 -0.3
1,769,751 + Psyr_1574 0.57 -0.5
1,769,833 - Psyr_1574 0.61 -0.7
1,770,031 + Psyr_1574 0.70 -1.3
1,770,174 + Psyr_1574 0.77 +0.7
1,770,174 + Psyr_1574 0.77 +2.4
1,770,174 + Psyr_1574 0.77 +1.7
1,770,175 - Psyr_1574 0.77 +0.3
1,770,183 + Psyr_1574 0.78 +0.5
1,770,184 - Psyr_1574 0.78 +1.2
1,770,369 + Psyr_1574 0.87 +0.3
1,770,370 - Psyr_1574 0.87 +1.1
1,770,370 - Psyr_1574 0.87 -1.6
1,770,396 + Psyr_1574 0.88 +1.6
1,770,397 - Psyr_1574 0.88 -1.4
1,770,397 - Psyr_1574 0.88 +1.1
1,770,399 + Psyr_1574 0.88 -0.0
1,770,405 + Psyr_1574 0.88 +0.1
1,770,406 - Psyr_1574 0.88 -2.0
1,770,406 - Psyr_1574 0.88 +0.5
1,770,580 - +0.6
1,770,659 - -1.8
1,770,678 + +0.4
1,770,743 - +1.2
1,770,763 + +2.0
1,770,791 + +0.7
1,770,920 - Psyr_1575 0.30 -0.7
1,770,920 - Psyr_1575 0.30 +0.2
1,770,920 - Psyr_1575 0.30 -0.3
1,771,009 + Psyr_1575 0.49 -0.3
1,771,010 - Psyr_1575 0.49 +0.2
1,771,040 + Psyr_1575 0.55 -0.6
1,771,040 + Psyr_1575 0.55 +0.3
1,771,040 + Psyr_1575 0.55 -1.1
1,771,040 + Psyr_1575 0.55 +1.8
1,771,040 + Psyr_1575 0.55 +2.2
1,771,040 + Psyr_1575 0.55 +1.1
1,771,040 + Psyr_1575 0.55 -1.3
1,771,040 + Psyr_1575 0.55 +0.2
1,771,040 + Psyr_1575 0.55 +0.2
1,771,040 + Psyr_1575 0.55 -0.8
1,771,040 + Psyr_1575 0.55 +2.6
1,771,040 + Psyr_1575 0.55 +1.6
1,771,040 + Psyr_1575 0.55 -0.0
1,771,040 + Psyr_1575 0.55 +0.2
1,771,040 + Psyr_1575 0.55 -0.8
1,771,040 + Psyr_1575 0.55 -1.4
1,771,040 + Psyr_1575 0.55 -0.0
1,771,040 + Psyr_1575 0.55 +2.1
1,771,040 + Psyr_1575 0.55 -0.4
1,771,040 + Psyr_1575 0.55 -0.9
1,771,040 + Psyr_1575 0.55 -0.5
1,771,040 + Psyr_1575 0.55 +1.1
1,771,040 + Psyr_1575 0.55 +2.0
1,771,040 + Psyr_1575 0.55 +0.2
1,771,040 + Psyr_1575 0.55 -0.3
1,771,040 + Psyr_1575 0.55 +3.0
1,771,041 - Psyr_1575 0.56 +1.1
1,771,041 - Psyr_1575 0.56 -0.4
1,771,041 - Psyr_1575 0.56 +0.8
1,771,041 - Psyr_1575 0.56 -0.8
1,771,041 - Psyr_1575 0.56 -0.1
1,771,041 - Psyr_1575 0.56 -1.5
1,771,041 - Psyr_1575 0.56 -0.4
1,771,041 - Psyr_1575 0.56 +0.5
1,771,041 - Psyr_1575 0.56 -1.6
1,771,041 - Psyr_1575 0.56 +1.2
1,771,041 - Psyr_1575 0.56 +1.5
1,771,041 - Psyr_1575 0.56 -1.2
1,771,041 - Psyr_1575 0.56 +1.7
1,771,041 - Psyr_1575 0.56 -0.0
1,771,041 - Psyr_1575 0.56 +0.2
1,771,041 - Psyr_1575 0.56 +1.4
1,771,041 - Psyr_1575 0.56 -1.2
1,771,041 - Psyr_1575 0.56 -0.8
1,771,041 - Psyr_1575 0.56 -0.8
1,771,041 - Psyr_1575 0.56 -0.4
1,771,041 - Psyr_1575 0.56 -0.5
1,771,041 - Psyr_1575 0.56 +2.0
1,771,041 - Psyr_1575 0.56 -0.7
1,771,045 + Psyr_1575 0.56 -1.4
1,771,045 + Psyr_1575 0.56 -1.7
1,771,045 + Psyr_1575 0.56 +1.4
1,771,045 + Psyr_1575 0.56 -3.6
1,771,045 + Psyr_1575 0.56 -0.8
1,771,045 + Psyr_1575 0.56 -1.2
1,771,045 + Psyr_1575 0.56 -0.3
1,771,045 + Psyr_1575 0.56 +0.7
1,771,045 + Psyr_1575 0.56 -0.4
1,771,046 - Psyr_1575 0.57 +3.5
1,771,046 - Psyr_1575 0.57 +0.7
1,771,046 - Psyr_1575 0.57 +0.2
1,771,046 - Psyr_1575 0.57 -0.5
1,771,046 - Psyr_1575 0.57 +0.8
1,771,046 - Psyr_1575 0.57 -0.1
1,771,046 - Psyr_1575 0.57 -1.0
1,771,187 + Psyr_1575 0.86 +0.9
1,771,251 - +0.0
1,771,339 + -0.4
1,771,449 + Psyr_1576 0.15 +3.5
1,771,450 - Psyr_1576 0.15 -0.4
1,771,450 - Psyr_1576 0.15 -1.0
1,771,559 + Psyr_1576 0.29 +2.3
1,771,632 - Psyr_1576 0.38 -0.9

Or see this region's nucleotide sequence