Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1425

Experiment: KB with Paclitaxel 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1423 and Psyr_1424 are separated by 113 nucleotidesPsyr_1424 and Psyr_1425 overlap by 14 nucleotidesPsyr_1425 and Psyr_1426 are separated by 655 nucleotides Psyr_1423: Psyr_1423 - Protein of unknown function DUF159, at 1,611,700 to 1,612,392 _1423 Psyr_1424: Psyr_1424 - Peptidase S24, S26A and S26B, at 1,612,506 to 1,612,940 _1424 Psyr_1425: Psyr_1425 - DNA-directed DNA polymerase, at 1,612,927 to 1,614,207 _1425 Psyr_1426: Psyr_1426 - conserved hypothetical protein, at 1,614,863 to 1,616,401 _1426 Position (kb) 1612 1613 1614 1615Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1612.002 kb on + strand, within Psyr_1423at 1612.002 kb on + strand, within Psyr_1423at 1612.002 kb on + strand, within Psyr_1423at 1612.003 kb on - strand, within Psyr_1423at 1612.003 kb on - strand, within Psyr_1423at 1612.003 kb on - strand, within Psyr_1423at 1612.012 kb on - strand, within Psyr_1423at 1612.012 kb on - strand, within Psyr_1423at 1612.032 kb on - strand, within Psyr_1423at 1612.032 kb on - strand, within Psyr_1423at 1612.273 kb on - strand, within Psyr_1423at 1612.273 kb on - strand, within Psyr_1423at 1612.286 kb on + strand, within Psyr_1423at 1612.286 kb on + strand, within Psyr_1423at 1612.286 kb on + strand, within Psyr_1423at 1612.287 kb on - strand, within Psyr_1423at 1612.287 kb on - strand, within Psyr_1423at 1612.294 kb on + strand, within Psyr_1423at 1612.491 kb on - strandat 1612.514 kb on - strandat 1612.605 kb on + strand, within Psyr_1424at 1612.605 kb on + strand, within Psyr_1424at 1612.628 kb on - strand, within Psyr_1424at 1612.781 kb on + strand, within Psyr_1424at 1612.848 kb on - strand, within Psyr_1424at 1612.911 kb on + strandat 1612.911 kb on + strandat 1612.911 kb on + strandat 1612.911 kb on + strandat 1612.911 kb on + strandat 1612.911 kb on + strandat 1612.911 kb on + strandat 1612.911 kb on + strandat 1612.911 kb on + strandat 1612.911 kb on + strandat 1612.976 kb on - strandat 1612.976 kb on - strandat 1612.976 kb on - strandat 1612.976 kb on - strandat 1613.104 kb on + strand, within Psyr_1425at 1613.161 kb on + strand, within Psyr_1425at 1613.161 kb on + strand, within Psyr_1425at 1613.161 kb on + strand, within Psyr_1425at 1613.161 kb on + strand, within Psyr_1425at 1613.161 kb on + strand, within Psyr_1425at 1613.161 kb on + strand, within Psyr_1425at 1613.161 kb on + strand, within Psyr_1425at 1613.162 kb on - strand, within Psyr_1425at 1613.162 kb on - strand, within Psyr_1425at 1613.162 kb on - strand, within Psyr_1425at 1613.162 kb on - strand, within Psyr_1425at 1613.162 kb on - strand, within Psyr_1425at 1613.162 kb on - strand, within Psyr_1425at 1613.164 kb on - strand, within Psyr_1425at 1613.171 kb on - strand, within Psyr_1425at 1613.233 kb on + strand, within Psyr_1425at 1613.233 kb on + strand, within Psyr_1425at 1613.233 kb on + strand, within Psyr_1425at 1613.233 kb on + strand, within Psyr_1425at 1613.234 kb on - strand, within Psyr_1425at 1613.234 kb on - strand, within Psyr_1425at 1613.234 kb on - strand, within Psyr_1425at 1613.319 kb on + strand, within Psyr_1425at 1613.319 kb on + strand, within Psyr_1425at 1613.320 kb on - strand, within Psyr_1425at 1613.320 kb on - strand, within Psyr_1425at 1613.320 kb on - strand, within Psyr_1425at 1613.320 kb on - strand, within Psyr_1425at 1613.320 kb on - strand, within Psyr_1425at 1613.394 kb on + strand, within Psyr_1425at 1613.394 kb on + strand, within Psyr_1425at 1613.394 kb on + strand, within Psyr_1425at 1613.412 kb on + strand, within Psyr_1425at 1613.427 kb on - strand, within Psyr_1425at 1613.427 kb on - strand, within Psyr_1425at 1613.467 kb on - strand, within Psyr_1425at 1613.470 kb on - strand, within Psyr_1425at 1613.526 kb on + strand, within Psyr_1425at 1613.526 kb on + strand, within Psyr_1425at 1613.526 kb on + strand, within Psyr_1425at 1613.527 kb on - strand, within Psyr_1425at 1613.722 kb on - strand, within Psyr_1425at 1613.743 kb on + strand, within Psyr_1425at 1613.743 kb on + strand, within Psyr_1425at 1613.743 kb on + strand, within Psyr_1425at 1613.743 kb on + strand, within Psyr_1425at 1613.743 kb on + strand, within Psyr_1425at 1613.743 kb on + strand, within Psyr_1425at 1613.743 kb on + strand, within Psyr_1425at 1613.744 kb on - strand, within Psyr_1425at 1613.744 kb on - strand, within Psyr_1425at 1613.744 kb on - strand, within Psyr_1425at 1613.744 kb on - strand, within Psyr_1425at 1613.744 kb on - strand, within Psyr_1425at 1613.744 kb on - strand, within Psyr_1425at 1613.744 kb on - strand, within Psyr_1425at 1613.744 kb on - strand, within Psyr_1425at 1613.744 kb on - strand, within Psyr_1425at 1613.744 kb on - strand, within Psyr_1425at 1613.845 kb on + strand, within Psyr_1425at 1613.845 kb on + strand, within Psyr_1425at 1613.845 kb on + strand, within Psyr_1425at 1613.846 kb on - strand, within Psyr_1425at 1613.846 kb on - strand, within Psyr_1425at 1613.846 kb on - strand, within Psyr_1425at 1613.953 kb on + strand, within Psyr_1425at 1614.004 kb on - strand, within Psyr_1425at 1614.075 kb on + strand, within Psyr_1425at 1614.099 kb on - strandat 1614.099 kb on - strandat 1614.135 kb on + strandat 1614.163 kb on + strandat 1614.165 kb on + strandat 1614.165 kb on + strandat 1614.165 kb on + strandat 1614.166 kb on - strandat 1614.166 kb on - strandat 1614.216 kb on + strandat 1614.217 kb on - strandat 1614.240 kb on + strandat 1614.240 kb on + strandat 1614.241 kb on - strandat 1614.241 kb on - strandat 1614.241 kb on - strandat 1614.241 kb on - strandat 1614.245 kb on + strandat 1614.246 kb on - strandat 1614.246 kb on - strandat 1614.246 kb on - strandat 1614.303 kb on + strandat 1614.345 kb on - strandat 1614.370 kb on + strandat 1614.371 kb on - strandat 1614.371 kb on - strandat 1614.374 kb on + strandat 1614.374 kb on + strandat 1614.374 kb on + strandat 1614.374 kb on + strandat 1614.374 kb on + strandat 1614.374 kb on + strandat 1614.375 kb on - strandat 1614.375 kb on - strandat 1614.375 kb on - strandat 1614.375 kb on - strandat 1614.375 kb on - strandat 1614.375 kb on - strandat 1614.375 kb on - strandat 1614.381 kb on - strandat 1614.382 kb on + strandat 1614.400 kb on + strandat 1614.400 kb on + strandat 1614.401 kb on - strandat 1614.408 kb on - strandat 1614.526 kb on + strandat 1614.526 kb on + strandat 1614.526 kb on + strandat 1614.526 kb on + strandat 1614.526 kb on + strandat 1614.526 kb on + strandat 1614.526 kb on + strandat 1614.526 kb on + strandat 1614.526 kb on + strandat 1614.526 kb on + strandat 1614.526 kb on + strandat 1614.526 kb on + strandat 1614.526 kb on + strandat 1614.527 kb on - strandat 1614.527 kb on - strandat 1614.527 kb on - strandat 1614.527 kb on - strandat 1614.527 kb on - strandat 1614.527 kb on - strandat 1614.527 kb on - strandat 1614.527 kb on - strandat 1614.527 kb on - strandat 1614.527 kb on - strandat 1614.527 kb on - strandat 1614.527 kb on - strandat 1614.527 kb on - strandat 1614.527 kb on - strandat 1614.527 kb on - strandat 1614.527 kb on - strandat 1614.527 kb on - strandat 1614.527 kb on - strandat 1614.528 kb on + strandat 1614.528 kb on + strandat 1614.528 kb on + strandat 1614.528 kb on + strandat 1614.529 kb on - strandat 1614.559 kb on + strandat 1614.560 kb on - strandat 1614.560 kb on - strandat 1614.618 kb on + strandat 1614.618 kb on + strandat 1614.644 kb on + strandat 1614.709 kb on + strandat 1614.709 kb on + strandat 1614.709 kb on + strandat 1614.709 kb on + strandat 1614.710 kb on - strandat 1614.710 kb on - strandat 1614.710 kb on - strandat 1614.710 kb on - strandat 1614.745 kb on + strandat 1614.745 kb on + strandat 1614.745 kb on + strandat 1614.745 kb on + strandat 1614.746 kb on - strandat 1614.767 kb on + strandat 1614.767 kb on + strandat 1614.767 kb on + strandat 1614.783 kb on + strandat 1614.783 kb on + strandat 1614.783 kb on + strandat 1614.784 kb on - strandat 1614.784 kb on - strandat 1614.784 kb on - strandat 1614.784 kb on - strandat 1614.785 kb on + strandat 1614.785 kb on + strandat 1614.785 kb on + strandat 1614.785 kb on + strandat 1614.785 kb on + strandat 1614.786 kb on - strandat 1614.786 kb on - strandat 1614.786 kb on - strandat 1614.786 kb on - strandat 1614.786 kb on - strandat 1614.786 kb on - strandat 1614.786 kb on - strandat 1614.789 kb on + strandat 1614.789 kb on + strandat 1614.790 kb on - strandat 1614.790 kb on - strandat 1614.790 kb on - strandat 1614.790 kb on - strandat 1614.790 kb on - strandat 1614.790 kb on - strandat 1614.864 kb on + strandat 1614.864 kb on + strandat 1614.864 kb on + strandat 1614.864 kb on + strandat 1614.893 kb on + strandat 1614.893 kb on + strandat 1614.893 kb on + strandat 1614.893 kb on + strandat 1614.893 kb on + strandat 1614.893 kb on + strandat 1614.894 kb on - strandat 1614.894 kb on - strandat 1614.894 kb on - strandat 1614.894 kb on - strandat 1614.894 kb on - strandat 1614.894 kb on - strandat 1614.894 kb on - strandat 1615.018 kb on + strand, within Psyr_1426at 1615.018 kb on + strand, within Psyr_1426at 1615.018 kb on + strand, within Psyr_1426at 1615.018 kb on + strand, within Psyr_1426at 1615.019 kb on - strand, within Psyr_1426at 1615.019 kb on - strand, within Psyr_1426at 1615.019 kb on - strand, within Psyr_1426at 1615.019 kb on - strand, within Psyr_1426at 1615.049 kb on + strand, within Psyr_1426at 1615.049 kb on + strand, within Psyr_1426at 1615.049 kb on + strand, within Psyr_1426at 1615.049 kb on + strand, within Psyr_1426at 1615.049 kb on + strand, within Psyr_1426at 1615.050 kb on - strand, within Psyr_1426at 1615.050 kb on - strand, within Psyr_1426at 1615.050 kb on - strand, within Psyr_1426at 1615.128 kb on + strand, within Psyr_1426at 1615.128 kb on + strand, within Psyr_1426at 1615.129 kb on - strand, within Psyr_1426at 1615.150 kb on + strand, within Psyr_1426at 1615.150 kb on + strand, within Psyr_1426at 1615.150 kb on + strand, within Psyr_1426at 1615.150 kb on + strand, within Psyr_1426at 1615.151 kb on - strand, within Psyr_1426at 1615.151 kb on - strand, within Psyr_1426at 1615.151 kb on - strand, within Psyr_1426at 1615.154 kb on + strand, within Psyr_1426

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Paclitaxel 10 mM
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1,612,002 + Psyr_1423 0.44 -0.3
1,612,002 + Psyr_1423 0.44 +0.0
1,612,002 + Psyr_1423 0.44 +0.1
1,612,003 - Psyr_1423 0.44 +0.6
1,612,003 - Psyr_1423 0.44 +1.1
1,612,003 - Psyr_1423 0.44 +0.7
1,612,012 - Psyr_1423 0.45 +1.4
1,612,012 - Psyr_1423 0.45 -0.3
1,612,032 - Psyr_1423 0.48 -2.2
1,612,032 - Psyr_1423 0.48 +0.2
1,612,273 - Psyr_1423 0.83 -1.1
1,612,273 - Psyr_1423 0.83 -1.7
1,612,286 + Psyr_1423 0.85 +0.8
1,612,286 + Psyr_1423 0.85 +0.3
1,612,286 + Psyr_1423 0.85 -0.4
1,612,287 - Psyr_1423 0.85 -2.2
1,612,287 - Psyr_1423 0.85 -0.3
1,612,294 + Psyr_1423 0.86 -1.2
1,612,491 - -0.1
1,612,514 - +0.9
1,612,605 + Psyr_1424 0.23 -1.1
1,612,605 + Psyr_1424 0.23 -0.3
1,612,628 - Psyr_1424 0.28 -1.3
1,612,781 + Psyr_1424 0.63 -0.5
1,612,848 - Psyr_1424 0.79 +1.6
1,612,911 + -0.9
1,612,911 + +2.0
1,612,911 + +0.0
1,612,911 + +0.9
1,612,911 + +0.8
1,612,911 + -0.3
1,612,911 + -0.1
1,612,911 + -1.4
1,612,911 + -0.1
1,612,911 + +0.6
1,612,976 - +0.4
1,612,976 - +1.1
1,612,976 - +0.8
1,612,976 - -0.3
1,613,104 + Psyr_1425 0.14 -0.3
1,613,161 + Psyr_1425 0.18 +0.2
1,613,161 + Psyr_1425 0.18 -1.0
1,613,161 + Psyr_1425 0.18 -0.3
1,613,161 + Psyr_1425 0.18 +0.1
1,613,161 + Psyr_1425 0.18 +0.7
1,613,161 + Psyr_1425 0.18 +0.3
1,613,161 + Psyr_1425 0.18 -0.0
1,613,162 - Psyr_1425 0.18 +0.2
1,613,162 - Psyr_1425 0.18 -1.0
1,613,162 - Psyr_1425 0.18 +0.1
1,613,162 - Psyr_1425 0.18 -0.9
1,613,162 - Psyr_1425 0.18 -0.8
1,613,162 - Psyr_1425 0.18 -0.6
1,613,164 - Psyr_1425 0.19 -1.4
1,613,171 - Psyr_1425 0.19 -0.3
1,613,233 + Psyr_1425 0.24 -0.1
1,613,233 + Psyr_1425 0.24 +0.1
1,613,233 + Psyr_1425 0.24 +0.0
1,613,233 + Psyr_1425 0.24 -0.3
1,613,234 - Psyr_1425 0.24 -1.0
1,613,234 - Psyr_1425 0.24 -0.2
1,613,234 - Psyr_1425 0.24 -0.0
1,613,319 + Psyr_1425 0.31 -0.2
1,613,319 + Psyr_1425 0.31 -1.3
1,613,320 - Psyr_1425 0.31 -1.6
1,613,320 - Psyr_1425 0.31 -0.9
1,613,320 - Psyr_1425 0.31 -1.9
1,613,320 - Psyr_1425 0.31 -1.6
1,613,320 - Psyr_1425 0.31 -1.1
1,613,394 + Psyr_1425 0.36 -1.5
1,613,394 + Psyr_1425 0.36 +0.3
1,613,394 + Psyr_1425 0.36 -2.2
1,613,412 + Psyr_1425 0.38 +0.5
1,613,427 - Psyr_1425 0.39 +0.3
1,613,427 - Psyr_1425 0.39 -0.8
1,613,467 - Psyr_1425 0.42 +0.3
1,613,470 - Psyr_1425 0.42 -0.3
1,613,526 + Psyr_1425 0.47 -0.1
1,613,526 + Psyr_1425 0.47 -1.3
1,613,526 + Psyr_1425 0.47 +0.3
1,613,527 - Psyr_1425 0.47 +0.7
1,613,722 - Psyr_1425 0.62 +4.7
1,613,743 + Psyr_1425 0.64 -0.7
1,613,743 + Psyr_1425 0.64 -0.9
1,613,743 + Psyr_1425 0.64 -0.3
1,613,743 + Psyr_1425 0.64 -0.6
1,613,743 + Psyr_1425 0.64 -1.9
1,613,743 + Psyr_1425 0.64 +0.8
1,613,743 + Psyr_1425 0.64 +0.8
1,613,744 - Psyr_1425 0.64 -1.1
1,613,744 - Psyr_1425 0.64 +0.5
1,613,744 - Psyr_1425 0.64 +1.6
1,613,744 - Psyr_1425 0.64 -1.9
1,613,744 - Psyr_1425 0.64 -2.0
1,613,744 - Psyr_1425 0.64 -0.4
1,613,744 - Psyr_1425 0.64 -1.6
1,613,744 - Psyr_1425 0.64 +0.1
1,613,744 - Psyr_1425 0.64 +1.5
1,613,744 - Psyr_1425 0.64 -0.1
1,613,845 + Psyr_1425 0.72 +0.1
1,613,845 + Psyr_1425 0.72 -2.3
1,613,845 + Psyr_1425 0.72 +1.1
1,613,846 - Psyr_1425 0.72 -1.4
1,613,846 - Psyr_1425 0.72 +1.1
1,613,846 - Psyr_1425 0.72 +0.1
1,613,953 + Psyr_1425 0.80 +0.1
1,614,004 - Psyr_1425 0.84 -0.1
1,614,075 + Psyr_1425 0.90 -1.6
1,614,099 - +1.8
1,614,099 - -1.4
1,614,135 + -0.1
1,614,163 + +1.9
1,614,165 + -1.2
1,614,165 + +0.0
1,614,165 + -1.2
1,614,166 - +1.7
1,614,166 - -0.5
1,614,216 + -1.0
1,614,217 - -1.0
1,614,240 + +1.2
1,614,240 + +0.5
1,614,241 - -0.5
1,614,241 - -0.8
1,614,241 - +0.1
1,614,241 - -0.3
1,614,245 + -0.1
1,614,246 - -1.1
1,614,246 - +0.3
1,614,246 - +0.1
1,614,303 + -0.5
1,614,345 - +0.0
1,614,370 + -1.1
1,614,371 - -1.0
1,614,371 - +0.7
1,614,374 + -0.5
1,614,374 + -1.4
1,614,374 + +0.4
1,614,374 + -0.1
1,614,374 + -0.1
1,614,374 + -0.8
1,614,375 - -1.5
1,614,375 - +0.1
1,614,375 - -1.1
1,614,375 - +0.1
1,614,375 - -0.6
1,614,375 - +1.8
1,614,375 - +1.3
1,614,381 - -0.4
1,614,382 + -1.7
1,614,400 + +1.5
1,614,400 + +0.2
1,614,401 - -0.1
1,614,408 - +2.3
1,614,526 + +1.0
1,614,526 + +0.8
1,614,526 + +0.3
1,614,526 + -1.0
1,614,526 + -0.3
1,614,526 + +2.1
1,614,526 + -0.4
1,614,526 + +0.3
1,614,526 + -1.9
1,614,526 + +0.9
1,614,526 + -0.9
1,614,526 + -0.3
1,614,526 + -0.8
1,614,527 - -0.6
1,614,527 - -2.8
1,614,527 - -0.4
1,614,527 - -1.2
1,614,527 - -1.7
1,614,527 - +2.7
1,614,527 - +2.0
1,614,527 - -0.4
1,614,527 - -1.4
1,614,527 - -0.7
1,614,527 - -0.3
1,614,527 - -1.2
1,614,527 - -0.2
1,614,527 - -0.0
1,614,527 - -2.8
1,614,527 - +0.1
1,614,527 - -0.5
1,614,527 - -1.6
1,614,528 + +1.1
1,614,528 + -3.7
1,614,528 + -0.1
1,614,528 + -0.6
1,614,529 - -0.6
1,614,559 + +0.8
1,614,560 - -2.2
1,614,560 - -1.1
1,614,618 + +0.3
1,614,618 + -1.5
1,614,644 + -0.2
1,614,709 + +1.5
1,614,709 + +0.7
1,614,709 + +1.5
1,614,709 + +0.8
1,614,710 - +0.1
1,614,710 - -0.9
1,614,710 - +2.3
1,614,710 - +0.4
1,614,745 + +1.5
1,614,745 + +1.6
1,614,745 + -1.3
1,614,745 + +1.3
1,614,746 - -1.4
1,614,767 + -0.3
1,614,767 + -0.6
1,614,767 + -1.0
1,614,783 + +0.3
1,614,783 + -2.9
1,614,783 + -0.7
1,614,784 - -0.8
1,614,784 - -0.4
1,614,784 - +1.5
1,614,784 - -0.1
1,614,785 + +0.4
1,614,785 + -1.2
1,614,785 + -0.9
1,614,785 + +1.7
1,614,785 + -0.2
1,614,786 - -3.3
1,614,786 - -0.7
1,614,786 - -1.6
1,614,786 - +0.3
1,614,786 - +1.4
1,614,786 - +1.3
1,614,786 - +1.7
1,614,789 + -0.5
1,614,789 + -0.2
1,614,790 - -0.8
1,614,790 - -1.3
1,614,790 - -0.1
1,614,790 - +0.3
1,614,790 - -1.2
1,614,790 - +1.8
1,614,864 + -0.2
1,614,864 + +0.1
1,614,864 + +0.2
1,614,864 + -0.5
1,614,893 + +1.6
1,614,893 + +1.6
1,614,893 + -1.2
1,614,893 + -1.3
1,614,893 + -1.7
1,614,893 + -1.3
1,614,894 - +0.8
1,614,894 - -0.9
1,614,894 - -0.3
1,614,894 - -0.0
1,614,894 - -1.1
1,614,894 - +0.8
1,614,894 - -0.4
1,615,018 + Psyr_1426 0.10 -0.3
1,615,018 + Psyr_1426 0.10 +0.6
1,615,018 + Psyr_1426 0.10 +0.9
1,615,018 + Psyr_1426 0.10 -0.2
1,615,019 - Psyr_1426 0.10 +1.3
1,615,019 - Psyr_1426 0.10 -3.2
1,615,019 - Psyr_1426 0.10 +0.3
1,615,019 - Psyr_1426 0.10 -0.0
1,615,049 + Psyr_1426 0.12 +1.3
1,615,049 + Psyr_1426 0.12 -0.7
1,615,049 + Psyr_1426 0.12 +0.5
1,615,049 + Psyr_1426 0.12 -1.3
1,615,049 + Psyr_1426 0.12 +0.3
1,615,050 - Psyr_1426 0.12 +0.7
1,615,050 - Psyr_1426 0.12 -0.6
1,615,050 - Psyr_1426 0.12 -0.3
1,615,128 + Psyr_1426 0.17 +3.3
1,615,128 + Psyr_1426 0.17 -2.1
1,615,129 - Psyr_1426 0.17 +1.3
1,615,150 + Psyr_1426 0.19 +0.3
1,615,150 + Psyr_1426 0.19 +0.8
1,615,150 + Psyr_1426 0.19 -1.9
1,615,150 + Psyr_1426 0.19 -1.9
1,615,151 - Psyr_1426 0.19 -1.3
1,615,151 - Psyr_1426 0.19 -0.5
1,615,151 - Psyr_1426 0.19 -0.1
1,615,154 + Psyr_1426 0.19 +0.2

Or see this region's nucleotide sequence