Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS00035 and HSERO_RS00040 are separated by 260 nucleotides HSERO_RS00040 and HSERO_RS00045 are separated by 107 nucleotides
HSERO_RS00035: HSERO_RS00035 - 4-aminobutyrate aminotransferase, at 12,433 to 13,761
_RS00035
HSERO_RS00040: HSERO_RS00040 - hypothetical protein, at 14,022 to 14,987
_RS00040
HSERO_RS00045: HSERO_RS00045 - hypothetical protein, at 15,095 to 16,108
_RS00045
Position (kb) 14
15 Strain fitness (log2 ratio) -2
-1
0
1 at 13.159 kb on - strand, within HSERO_RS00035 at 13.285 kb on - strand, within HSERO_RS00035 at 13.328 kb on + strand, within HSERO_RS00035 at 13.418 kb on + strand, within HSERO_RS00035 at 13.441 kb on + strand, within HSERO_RS00035 at 13.451 kb on + strand, within HSERO_RS00035 at 13.459 kb on - strand, within HSERO_RS00035 at 13.758 kb on - strand at 13.767 kb on + strand at 13.772 kb on + strand at 13.775 kb on - strand at 13.871 kb on + strand at 14.007 kb on - strand at 14.094 kb on + strand at 14.102 kb on - strand at 14.126 kb on - strand, within HSERO_RS00040 at 14.278 kb on + strand, within HSERO_RS00040 at 14.342 kb on + strand, within HSERO_RS00040 at 14.342 kb on + strand, within HSERO_RS00040 at 14.640 kb on - strand, within HSERO_RS00040 at 14.736 kb on + strand, within HSERO_RS00040 at 14.783 kb on + strand, within HSERO_RS00040 at 14.791 kb on - strand, within HSERO_RS00040 at 14.879 kb on + strand, within HSERO_RS00040 at 14.928 kb on - strand at 15.052 kb on - strand at 15.059 kb on - strand at 15.062 kb on - strand at 15.119 kb on - strand at 15.160 kb on - strand at 15.253 kb on - strand, within HSERO_RS00045 at 15.333 kb on + strand, within HSERO_RS00045 at 15.413 kb on + strand, within HSERO_RS00045 at 15.421 kb on - strand, within HSERO_RS00045 at 15.421 kb on - strand, within HSERO_RS00045 at 15.718 kb on - strand, within HSERO_RS00045 at 15.851 kb on + strand, within HSERO_RS00045 at 15.962 kb on - strand, within HSERO_RS00045 at 15.971 kb on - strand, within HSERO_RS00045
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 13,159 - HSERO_RS00035 0.55 -0.5 13,285 - HSERO_RS00035 0.64 +0.1 13,328 + HSERO_RS00035 0.67 -0.4 13,418 + HSERO_RS00035 0.74 +0.4 13,441 + HSERO_RS00035 0.76 -0.5 13,451 + HSERO_RS00035 0.77 +0.2 13,459 - HSERO_RS00035 0.77 -0.4 13,758 - -0.1 13,767 + +0.2 13,772 + +0.2 13,775 - -0.1 13,871 + -0.3 14,007 - -0.2 14,094 + -0.0 14,102 - -1.1 14,126 - HSERO_RS00040 0.11 +0.4 14,278 + HSERO_RS00040 0.27 -1.0 14,342 + HSERO_RS00040 0.33 -1.0 14,342 + HSERO_RS00040 0.33 -0.5 14,640 - HSERO_RS00040 0.64 -0.4 14,736 + HSERO_RS00040 0.74 +0.9 14,783 + HSERO_RS00040 0.79 +0.2 14,791 - HSERO_RS00040 0.80 -0.2 14,879 + HSERO_RS00040 0.89 -0.7 14,928 - -0.4 15,052 - -1.6 15,059 - -0.4 15,062 - -1.0 15,119 - -0.5 15,160 - +1.5 15,253 - HSERO_RS00045 0.16 -1.9 15,333 + HSERO_RS00045 0.23 +0.0 15,413 + HSERO_RS00045 0.31 -1.1 15,421 - HSERO_RS00045 0.32 +0.6 15,421 - HSERO_RS00045 0.32 -1.0 15,718 - HSERO_RS00045 0.61 -1.4 15,851 + HSERO_RS00045 0.75 -0.1 15,962 - HSERO_RS00045 0.86 -1.9 15,971 - HSERO_RS00045 0.86 -0.7
Or see this region's nucleotide sequence