Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS19425

Experiment: Lauric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS19415 and ABZR87_RS19420 are separated by 97 nucleotidesABZR87_RS19420 and ABZR87_RS19425 are separated by 149 nucleotidesABZR87_RS19425 and ABZR87_RS19430 are separated by 1 nucleotides ABZR87_RS19415: ABZR87_RS19415 - LysR family transcriptional regulator, at 725,998 to 726,942 _RS19415 ABZR87_RS19420: ABZR87_RS19420 - hypothetical protein, at 727,040 to 727,369 _RS19420 ABZR87_RS19425: ABZR87_RS19425 - Mut7-C RNAse domain-containing protein, at 727,519 to 728,295 _RS19425 ABZR87_RS19430: ABZR87_RS19430 - alpha,alpha-trehalose-phosphate synthase (UDP-forming), at 728,297 to 729,727 _RS19430 Position (kb) 727 728 729Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 726.571 kb on + strand, within ABZR87_RS19415at 726.572 kb on - strand, within ABZR87_RS19415at 726.736 kb on + strand, within ABZR87_RS19415at 726.737 kb on - strand, within ABZR87_RS19415at 726.737 kb on - strand, within ABZR87_RS19415at 726.737 kb on - strand, within ABZR87_RS19415at 726.781 kb on + strand, within ABZR87_RS19415at 726.781 kb on + strand, within ABZR87_RS19415at 726.781 kb on + strand, within ABZR87_RS19415at 726.781 kb on + strand, within ABZR87_RS19415at 726.781 kb on + strand, within ABZR87_RS19415at 726.781 kb on + strand, within ABZR87_RS19415at 726.782 kb on - strand, within ABZR87_RS19415at 726.782 kb on - strand, within ABZR87_RS19415at 726.782 kb on - strand, within ABZR87_RS19415at 726.782 kb on - strand, within ABZR87_RS19415at 726.782 kb on - strand, within ABZR87_RS19415at 726.782 kb on - strand, within ABZR87_RS19415at 726.783 kb on + strand, within ABZR87_RS19415at 726.783 kb on + strand, within ABZR87_RS19415at 726.783 kb on + strand, within ABZR87_RS19415at 726.783 kb on + strand, within ABZR87_RS19415at 726.783 kb on + strand, within ABZR87_RS19415at 726.784 kb on - strand, within ABZR87_RS19415at 726.784 kb on - strand, within ABZR87_RS19415at 726.784 kb on - strand, within ABZR87_RS19415at 726.814 kb on + strand, within ABZR87_RS19415at 726.815 kb on - strand, within ABZR87_RS19415at 726.815 kb on - strand, within ABZR87_RS19415at 726.948 kb on + strandat 726.990 kb on - strandat 726.990 kb on - strandat 726.990 kb on - strandat 726.990 kb on - strandat 726.990 kb on - strandat 727.199 kb on + strand, within ABZR87_RS19420at 727.232 kb on + strand, within ABZR87_RS19420at 727.232 kb on + strand, within ABZR87_RS19420at 727.232 kb on + strand, within ABZR87_RS19420at 727.232 kb on + strand, within ABZR87_RS19420at 727.233 kb on - strand, within ABZR87_RS19420at 727.233 kb on - strand, within ABZR87_RS19420at 727.233 kb on - strand, within ABZR87_RS19420at 727.233 kb on - strand, within ABZR87_RS19420at 727.233 kb on - strand, within ABZR87_RS19420at 727.239 kb on - strand, within ABZR87_RS19420at 727.239 kb on - strand, within ABZR87_RS19420at 727.239 kb on - strand, within ABZR87_RS19420at 727.239 kb on - strand, within ABZR87_RS19420at 727.239 kb on - strand, within ABZR87_RS19420at 727.271 kb on + strand, within ABZR87_RS19420at 727.304 kb on + strand, within ABZR87_RS19420at 727.304 kb on + strand, within ABZR87_RS19420at 727.304 kb on + strand, within ABZR87_RS19420at 727.304 kb on + strand, within ABZR87_RS19420at 727.304 kb on + strand, within ABZR87_RS19420at 727.304 kb on + strand, within ABZR87_RS19420at 727.304 kb on + strand, within ABZR87_RS19420at 727.304 kb on + strand, within ABZR87_RS19420at 727.304 kb on + strand, within ABZR87_RS19420at 727.304 kb on + strand, within ABZR87_RS19420at 727.304 kb on + strand, within ABZR87_RS19420at 727.304 kb on + strand, within ABZR87_RS19420at 727.304 kb on + strand, within ABZR87_RS19420at 727.305 kb on - strand, within ABZR87_RS19420at 727.305 kb on - strand, within ABZR87_RS19420at 727.305 kb on - strand, within ABZR87_RS19420at 727.305 kb on - strand, within ABZR87_RS19420at 727.305 kb on - strand, within ABZR87_RS19420at 727.305 kb on - strand, within ABZR87_RS19420at 727.305 kb on - strand, within ABZR87_RS19420at 727.305 kb on - strand, within ABZR87_RS19420at 727.305 kb on - strand, within ABZR87_RS19420at 727.305 kb on - strand, within ABZR87_RS19420at 727.305 kb on - strand, within ABZR87_RS19420at 727.310 kb on + strand, within ABZR87_RS19420at 727.310 kb on + strand, within ABZR87_RS19420at 727.310 kb on + strand, within ABZR87_RS19420at 727.310 kb on + strand, within ABZR87_RS19420at 727.338 kb on - strandat 727.456 kb on + strandat 727.457 kb on - strandat 727.457 kb on - strandat 727.457 kb on - strandat 727.506 kb on + strandat 727.506 kb on + strandat 727.506 kb on + strandat 727.507 kb on - strandat 727.507 kb on - strandat 727.656 kb on + strand, within ABZR87_RS19425at 727.843 kb on + strand, within ABZR87_RS19425at 727.843 kb on + strand, within ABZR87_RS19425at 727.855 kb on + strand, within ABZR87_RS19425at 727.886 kb on - strand, within ABZR87_RS19425at 728.160 kb on + strand, within ABZR87_RS19425at 728.160 kb on + strand, within ABZR87_RS19425at 728.161 kb on - strand, within ABZR87_RS19425at 728.161 kb on - strand, within ABZR87_RS19425at 728.161 kb on - strand, within ABZR87_RS19425at 728.161 kb on - strand, within ABZR87_RS19425at 728.164 kb on + strand, within ABZR87_RS19425at 728.165 kb on - strand, within ABZR87_RS19425at 728.165 kb on - strand, within ABZR87_RS19425at 728.165 kb on - strand, within ABZR87_RS19425at 728.299 kb on - strandat 728.299 kb on - strandat 728.299 kb on - strandat 728.299 kb on - strandat 728.389 kb on - strandat 728.460 kb on + strand, within ABZR87_RS19430at 728.460 kb on + strand, within ABZR87_RS19430at 728.461 kb on - strand, within ABZR87_RS19430at 728.461 kb on - strand, within ABZR87_RS19430at 728.559 kb on + strand, within ABZR87_RS19430at 728.560 kb on - strand, within ABZR87_RS19430at 728.560 kb on - strand, within ABZR87_RS19430at 728.560 kb on - strand, within ABZR87_RS19430at 728.604 kb on + strand, within ABZR87_RS19430at 728.604 kb on + strand, within ABZR87_RS19430at 728.605 kb on - strand, within ABZR87_RS19430at 728.652 kb on + strand, within ABZR87_RS19430at 728.652 kb on + strand, within ABZR87_RS19430at 728.653 kb on - strand, within ABZR87_RS19430at 728.667 kb on + strand, within ABZR87_RS19430at 728.668 kb on - strand, within ABZR87_RS19430at 728.668 kb on - strand, within ABZR87_RS19430at 728.751 kb on + strand, within ABZR87_RS19430at 728.751 kb on + strand, within ABZR87_RS19430at 728.751 kb on + strand, within ABZR87_RS19430at 728.751 kb on + strand, within ABZR87_RS19430at 728.752 kb on - strand, within ABZR87_RS19430at 728.752 kb on - strand, within ABZR87_RS19430at 729.045 kb on + strand, within ABZR87_RS19430at 729.111 kb on + strand, within ABZR87_RS19430at 729.112 kb on - strand, within ABZR87_RS19430at 729.112 kb on - strand, within ABZR87_RS19430at 729.112 kb on - strand, within ABZR87_RS19430at 729.135 kb on + strand, within ABZR87_RS19430at 729.135 kb on + strand, within ABZR87_RS19430at 729.135 kb on + strand, within ABZR87_RS19430at 729.135 kb on + strand, within ABZR87_RS19430at 729.136 kb on - strand, within ABZR87_RS19430at 729.186 kb on + strand, within ABZR87_RS19430at 729.186 kb on + strand, within ABZR87_RS19430at 729.186 kb on + strand, within ABZR87_RS19430at 729.187 kb on - strand, within ABZR87_RS19430at 729.187 kb on - strand, within ABZR87_RS19430at 729.187 kb on - strand, within ABZR87_RS19430at 729.187 kb on - strand, within ABZR87_RS19430at 729.187 kb on - strand, within ABZR87_RS19430at 729.187 kb on - strand, within ABZR87_RS19430at 729.187 kb on - strand, within ABZR87_RS19430

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Per-strain Table

Position Strand Gene LocusTag Fraction Lauric (C)
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726,571 + ABZR87_RS19415 0.61 -0.3
726,572 - ABZR87_RS19415 0.61 +0.2
726,736 + ABZR87_RS19415 0.78 +0.6
726,737 - ABZR87_RS19415 0.78 +0.6
726,737 - ABZR87_RS19415 0.78 +0.3
726,737 - ABZR87_RS19415 0.78 +0.1
726,781 + ABZR87_RS19415 0.83 +0.7
726,781 + ABZR87_RS19415 0.83 +0.9
726,781 + ABZR87_RS19415 0.83 -2.3
726,781 + ABZR87_RS19415 0.83 +0.4
726,781 + ABZR87_RS19415 0.83 +0.8
726,781 + ABZR87_RS19415 0.83 -0.8
726,782 - ABZR87_RS19415 0.83 +0.2
726,782 - ABZR87_RS19415 0.83 +0.4
726,782 - ABZR87_RS19415 0.83 +0.8
726,782 - ABZR87_RS19415 0.83 -1.2
726,782 - ABZR87_RS19415 0.83 +0.2
726,782 - ABZR87_RS19415 0.83 +2.3
726,783 + ABZR87_RS19415 0.83 -0.8
726,783 + ABZR87_RS19415 0.83 +1.4
726,783 + ABZR87_RS19415 0.83 +0.2
726,783 + ABZR87_RS19415 0.83 +0.5
726,783 + ABZR87_RS19415 0.83 +0.6
726,784 - ABZR87_RS19415 0.83 -0.9
726,784 - ABZR87_RS19415 0.83 +1.3
726,784 - ABZR87_RS19415 0.83 +0.3
726,814 + ABZR87_RS19415 0.86 +0.4
726,815 - ABZR87_RS19415 0.86 +0.2
726,815 - ABZR87_RS19415 0.86 +0.5
726,948 + +0.6
726,990 - +0.2
726,990 - -0.4
726,990 - -0.7
726,990 - +0.2
726,990 - -0.7
727,199 + ABZR87_RS19420 0.48 -0.2
727,232 + ABZR87_RS19420 0.58 +0.0
727,232 + ABZR87_RS19420 0.58 +1.3
727,232 + ABZR87_RS19420 0.58 +0.3
727,232 + ABZR87_RS19420 0.58 +0.4
727,233 - ABZR87_RS19420 0.58 +1.4
727,233 - ABZR87_RS19420 0.58 -0.1
727,233 - ABZR87_RS19420 0.58 -1.5
727,233 - ABZR87_RS19420 0.58 +0.3
727,233 - ABZR87_RS19420 0.58 +0.2
727,239 - ABZR87_RS19420 0.60 +0.8
727,239 - ABZR87_RS19420 0.60 -0.6
727,239 - ABZR87_RS19420 0.60 -1.0
727,239 - ABZR87_RS19420 0.60 +0.3
727,239 - ABZR87_RS19420 0.60 +0.3
727,271 + ABZR87_RS19420 0.70 +0.3
727,304 + ABZR87_RS19420 0.80 +0.7
727,304 + ABZR87_RS19420 0.80 +0.5
727,304 + ABZR87_RS19420 0.80 +0.4
727,304 + ABZR87_RS19420 0.80 +2.3
727,304 + ABZR87_RS19420 0.80 -0.2
727,304 + ABZR87_RS19420 0.80 +0.5
727,304 + ABZR87_RS19420 0.80 +1.0
727,304 + ABZR87_RS19420 0.80 +0.4
727,304 + ABZR87_RS19420 0.80 -3.1
727,304 + ABZR87_RS19420 0.80 -0.5
727,304 + ABZR87_RS19420 0.80 -0.3
727,304 + ABZR87_RS19420 0.80 -0.9
727,304 + ABZR87_RS19420 0.80 +0.8
727,305 - ABZR87_RS19420 0.80 +0.4
727,305 - ABZR87_RS19420 0.80 +0.3
727,305 - ABZR87_RS19420 0.80 -0.1
727,305 - ABZR87_RS19420 0.80 -0.1
727,305 - ABZR87_RS19420 0.80 +0.2
727,305 - ABZR87_RS19420 0.80 +0.5
727,305 - ABZR87_RS19420 0.80 -0.6
727,305 - ABZR87_RS19420 0.80 +0.6
727,305 - ABZR87_RS19420 0.80 +0.5
727,305 - ABZR87_RS19420 0.80 +0.5
727,305 - ABZR87_RS19420 0.80 +0.4
727,310 + ABZR87_RS19420 0.82 +0.1
727,310 + ABZR87_RS19420 0.82 -0.5
727,310 + ABZR87_RS19420 0.82 +0.7
727,310 + ABZR87_RS19420 0.82 -0.3
727,338 - -0.1
727,456 + -1.5
727,457 - +0.1
727,457 - +0.7
727,457 - -0.8
727,506 + +1.3
727,506 + +0.0
727,506 + +0.7
727,507 - -0.0
727,507 - +0.6
727,656 + ABZR87_RS19425 0.18 -0.2
727,843 + ABZR87_RS19425 0.42 -0.1
727,843 + ABZR87_RS19425 0.42 +0.1
727,855 + ABZR87_RS19425 0.43 +0.1
727,886 - ABZR87_RS19425 0.47 +0.9
728,160 + ABZR87_RS19425 0.82 +0.2
728,160 + ABZR87_RS19425 0.82 +0.9
728,161 - ABZR87_RS19425 0.83 +1.7
728,161 - ABZR87_RS19425 0.83 -0.4
728,161 - ABZR87_RS19425 0.83 +2.0
728,161 - ABZR87_RS19425 0.83 -0.9
728,164 + ABZR87_RS19425 0.83 -0.5
728,165 - ABZR87_RS19425 0.83 +1.3
728,165 - ABZR87_RS19425 0.83 -1.3
728,165 - ABZR87_RS19425 0.83 +0.5
728,299 - +0.6
728,299 - +0.4
728,299 - -0.6
728,299 - +0.6
728,389 - -0.5
728,460 + ABZR87_RS19430 0.11 -1.7
728,460 + ABZR87_RS19430 0.11 -1.2
728,461 - ABZR87_RS19430 0.11 -0.7
728,461 - ABZR87_RS19430 0.11 -0.0
728,559 + ABZR87_RS19430 0.18 -0.1
728,560 - ABZR87_RS19430 0.18 +0.5
728,560 - ABZR87_RS19430 0.18 -0.9
728,560 - ABZR87_RS19430 0.18 -0.5
728,604 + ABZR87_RS19430 0.21 -0.9
728,604 + ABZR87_RS19430 0.21 +0.7
728,605 - ABZR87_RS19430 0.22 -1.1
728,652 + ABZR87_RS19430 0.25 -0.8
728,652 + ABZR87_RS19430 0.25 -0.8
728,653 - ABZR87_RS19430 0.25 +0.7
728,667 + ABZR87_RS19430 0.26 -1.0
728,668 - ABZR87_RS19430 0.26 -0.6
728,668 - ABZR87_RS19430 0.26 -1.9
728,751 + ABZR87_RS19430 0.32 -2.0
728,751 + ABZR87_RS19430 0.32 +0.0
728,751 + ABZR87_RS19430 0.32 +1.7
728,751 + ABZR87_RS19430 0.32 -0.6
728,752 - ABZR87_RS19430 0.32 -1.5
728,752 - ABZR87_RS19430 0.32 -1.2
729,045 + ABZR87_RS19430 0.52 -0.7
729,111 + ABZR87_RS19430 0.57 +0.1
729,112 - ABZR87_RS19430 0.57 -1.4
729,112 - ABZR87_RS19430 0.57 -1.4
729,112 - ABZR87_RS19430 0.57 -0.8
729,135 + ABZR87_RS19430 0.59 +0.0
729,135 + ABZR87_RS19430 0.59 +0.7
729,135 + ABZR87_RS19430 0.59 -1.2
729,135 + ABZR87_RS19430 0.59 -0.8
729,136 - ABZR87_RS19430 0.59 -1.4
729,186 + ABZR87_RS19430 0.62 -1.2
729,186 + ABZR87_RS19430 0.62 -2.4
729,186 + ABZR87_RS19430 0.62 -1.6
729,187 - ABZR87_RS19430 0.62 -0.6
729,187 - ABZR87_RS19430 0.62 -1.8
729,187 - ABZR87_RS19430 0.62 -1.9
729,187 - ABZR87_RS19430 0.62 -0.7
729,187 - ABZR87_RS19430 0.62 -0.5
729,187 - ABZR87_RS19430 0.62 -0.6
729,187 - ABZR87_RS19430 0.62 -1.8

Or see this region's nucleotide sequence