Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS19250

Experiment: Lauric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS19245 and ABZR87_RS19250 are separated by 68 nucleotidesABZR87_RS19250 and ABZR87_RS19255 are separated by 59 nucleotidesABZR87_RS19255 and ABZR87_RS19260 are separated by 56 nucleotides ABZR87_RS19245: ABZR87_RS19245 - LuxR family transcriptional regulator, at 679,814 to 680,917 _RS19245 ABZR87_RS19250: ABZR87_RS19250 - lytic transglycosylase domain-containing protein, at 680,986 to 681,717 _RS19250 ABZR87_RS19255: ABZR87_RS19255 - type III secretion system export apparatus subunit SctR, at 681,777 to 682,436 _RS19255 ABZR87_RS19260: ABZR87_RS19260 - type III secretion system cytoplasmic ring protein SctQ, at 682,493 to 683,578 _RS19260 Position (kb) 680 681 682Strain fitness (log2 ratio) -2 -1 0 1at 680.028 kb on + strand, within ABZR87_RS19245at 680.282 kb on + strand, within ABZR87_RS19245at 680.283 kb on - strand, within ABZR87_RS19245at 680.283 kb on - strand, within ABZR87_RS19245at 680.339 kb on + strand, within ABZR87_RS19245at 680.339 kb on + strand, within ABZR87_RS19245at 680.339 kb on + strand, within ABZR87_RS19245at 680.340 kb on - strand, within ABZR87_RS19245at 680.340 kb on - strand, within ABZR87_RS19245at 680.340 kb on - strand, within ABZR87_RS19245at 680.367 kb on - strand, within ABZR87_RS19245at 680.705 kb on - strand, within ABZR87_RS19245at 680.705 kb on - strand, within ABZR87_RS19245at 680.832 kb on - strandat 680.888 kb on + strandat 680.888 kb on + strandat 680.888 kb on + strandat 680.888 kb on + strandat 680.889 kb on - strandat 680.889 kb on - strandat 680.889 kb on - strandat 681.251 kb on + strand, within ABZR87_RS19250at 681.252 kb on - strand, within ABZR87_RS19250at 681.252 kb on - strand, within ABZR87_RS19250at 681.287 kb on + strand, within ABZR87_RS19250at 681.287 kb on + strand, within ABZR87_RS19250at 681.287 kb on + strand, within ABZR87_RS19250at 681.287 kb on + strand, within ABZR87_RS19250at 681.288 kb on - strand, within ABZR87_RS19250at 681.290 kb on + strand, within ABZR87_RS19250at 681.290 kb on + strand, within ABZR87_RS19250at 681.291 kb on - strand, within ABZR87_RS19250at 681.891 kb on + strand, within ABZR87_RS19255at 681.943 kb on + strand, within ABZR87_RS19255at 681.944 kb on - strand, within ABZR87_RS19255at 681.944 kb on - strand, within ABZR87_RS19255at 682.100 kb on + strand, within ABZR87_RS19255at 682.100 kb on + strand, within ABZR87_RS19255at 682.101 kb on - strand, within ABZR87_RS19255at 682.101 kb on - strand, within ABZR87_RS19255at 682.349 kb on - strand, within ABZR87_RS19255at 682.349 kb on - strand, within ABZR87_RS19255at 682.451 kb on + strandat 682.451 kb on + strandat 682.452 kb on - strandat 682.494 kb on + strandat 682.495 kb on - strandat 682.495 kb on - strandat 682.520 kb on + strandat 682.520 kb on + strandat 682.521 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lauric (C)
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680,028 + ABZR87_RS19245 0.19 -0.1
680,282 + ABZR87_RS19245 0.42 +1.7
680,283 - ABZR87_RS19245 0.42 -0.1
680,283 - ABZR87_RS19245 0.42 -0.9
680,339 + ABZR87_RS19245 0.48 +0.4
680,339 + ABZR87_RS19245 0.48 +0.0
680,339 + ABZR87_RS19245 0.48 -0.9
680,340 - ABZR87_RS19245 0.48 -0.3
680,340 - ABZR87_RS19245 0.48 +1.7
680,340 - ABZR87_RS19245 0.48 +0.3
680,367 - ABZR87_RS19245 0.50 -0.0
680,705 - ABZR87_RS19245 0.81 -0.5
680,705 - ABZR87_RS19245 0.81 +0.0
680,832 - +0.4
680,888 + -0.4
680,888 + +0.4
680,888 + -0.3
680,888 + +0.0
680,889 - +0.8
680,889 - +0.4
680,889 - +0.6
681,251 + ABZR87_RS19250 0.36 -0.7
681,252 - ABZR87_RS19250 0.36 +0.5
681,252 - ABZR87_RS19250 0.36 -0.6
681,287 + ABZR87_RS19250 0.41 -0.9
681,287 + ABZR87_RS19250 0.41 +1.4
681,287 + ABZR87_RS19250 0.41 -0.2
681,287 + ABZR87_RS19250 0.41 +0.0
681,288 - ABZR87_RS19250 0.41 -0.7
681,290 + ABZR87_RS19250 0.42 +0.1
681,290 + ABZR87_RS19250 0.42 -0.7
681,291 - ABZR87_RS19250 0.42 -0.5
681,891 + ABZR87_RS19255 0.17 -0.5
681,943 + ABZR87_RS19255 0.25 +1.7
681,944 - ABZR87_RS19255 0.25 +1.3
681,944 - ABZR87_RS19255 0.25 +0.4
682,100 + ABZR87_RS19255 0.49 +0.3
682,100 + ABZR87_RS19255 0.49 -2.3
682,101 - ABZR87_RS19255 0.49 +0.7
682,101 - ABZR87_RS19255 0.49 -0.1
682,349 - ABZR87_RS19255 0.87 +0.4
682,349 - ABZR87_RS19255 0.87 -1.4
682,451 + -0.2
682,451 + +0.4
682,452 - +0.1
682,494 + -2.4
682,495 - -0.3
682,495 - +0.4
682,520 + -0.2
682,520 + -2.3
682,521 - +0.6

Or see this region's nucleotide sequence