Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS16130

Experiment: Lauric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS16125 and ABZR87_RS16130 are separated by 2 nucleotidesABZR87_RS16130 and ABZR87_RS16135 are separated by 15 nucleotides ABZR87_RS16125: ABZR87_RS16125 - heme biosynthesis protein HemY, at 3,408,610 to 3,409,803 _RS16125 ABZR87_RS16130: ABZR87_RS16130 - fused uroporphyrinogen-III synthase HemD/membrane protein HemX, at 3,409,806 to 3,411,920 _RS16130 ABZR87_RS16135: ABZR87_RS16135 - hydroxymethylbilane synthase, at 3,411,936 to 3,412,952 _RS16135 Position (kb) 3409 3410 3411 3412Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 3408.818 kb on + strand, within ABZR87_RS16125at 3408.818 kb on + strand, within ABZR87_RS16125at 3408.818 kb on + strand, within ABZR87_RS16125at 3408.911 kb on + strand, within ABZR87_RS16125at 3409.128 kb on + strand, within ABZR87_RS16125at 3409.129 kb on - strand, within ABZR87_RS16125at 3409.129 kb on - strand, within ABZR87_RS16125at 3409.581 kb on - strand, within ABZR87_RS16125at 3409.603 kb on - strand, within ABZR87_RS16125at 3409.744 kb on - strandat 3409.792 kb on + strandat 3409.792 kb on + strandat 3410.170 kb on - strand, within ABZR87_RS16130at 3410.324 kb on + strand, within ABZR87_RS16130at 3410.324 kb on + strand, within ABZR87_RS16130at 3410.324 kb on + strand, within ABZR87_RS16130at 3410.377 kb on - strand, within ABZR87_RS16130at 3410.642 kb on + strand, within ABZR87_RS16130at 3411.002 kb on + strand, within ABZR87_RS16130at 3411.002 kb on + strand, within ABZR87_RS16130at 3411.003 kb on - strand, within ABZR87_RS16130at 3411.003 kb on - strand, within ABZR87_RS16130at 3411.003 kb on - strand, within ABZR87_RS16130at 3411.003 kb on - strand, within ABZR87_RS16130at 3411.003 kb on - strand, within ABZR87_RS16130at 3411.003 kb on - strand, within ABZR87_RS16130at 3411.938 kb on - strandat 3411.938 kb on - strandat 3411.942 kb on - strandat 3411.942 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lauric (C)
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3,408,818 + ABZR87_RS16125 0.17 -3.2
3,408,818 + ABZR87_RS16125 0.17 -3.9
3,408,818 + ABZR87_RS16125 0.17 -0.5
3,408,911 + ABZR87_RS16125 0.25 -3.5
3,409,128 + ABZR87_RS16125 0.43 -4.3
3,409,129 - ABZR87_RS16125 0.43 -3.7
3,409,129 - ABZR87_RS16125 0.43 -3.7
3,409,581 - ABZR87_RS16125 0.81 +0.9
3,409,603 - ABZR87_RS16125 0.83 -3.8
3,409,744 - -2.6
3,409,792 + +1.1
3,409,792 + -2.3
3,410,170 - ABZR87_RS16130 0.17 -0.7
3,410,324 + ABZR87_RS16130 0.24 -3.0
3,410,324 + ABZR87_RS16130 0.24 -1.1
3,410,324 + ABZR87_RS16130 0.24 -1.9
3,410,377 - ABZR87_RS16130 0.27 -3.9
3,410,642 + ABZR87_RS16130 0.40 -5.8
3,411,002 + ABZR87_RS16130 0.57 -3.7
3,411,002 + ABZR87_RS16130 0.57 -3.4
3,411,003 - ABZR87_RS16130 0.57 +0.2
3,411,003 - ABZR87_RS16130 0.57 -1.1
3,411,003 - ABZR87_RS16130 0.57 +0.7
3,411,003 - ABZR87_RS16130 0.57 +0.6
3,411,003 - ABZR87_RS16130 0.57 -0.3
3,411,003 - ABZR87_RS16130 0.57 -0.1
3,411,938 - -0.1
3,411,938 - +0.6
3,411,942 - +1.3
3,411,942 - +0.1

Or see this region's nucleotide sequence