Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS15500

Experiment: Lauric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS15495 and ABZR87_RS15500 overlap by 4 nucleotidesABZR87_RS15500 and ABZR87_RS15505 are separated by 83 nucleotides ABZR87_RS15495: ABZR87_RS15495 - O-antigen ligase family protein, at 3,261,428 to 3,262,708 _RS15495 ABZR87_RS15500: ABZR87_RS15500 - glycosyltransferase, at 3,262,705 to 3,263,772 _RS15500 ABZR87_RS15505: ABZR87_RS15505 - DNA polymerase III subunit alpha, at 3,263,856 to 3,267,374 _RS15505 Position (kb) 3262 3263 3264Strain fitness (log2 ratio) -1 0 1 2 3 4at 3261.709 kb on - strand, within ABZR87_RS15495at 3261.709 kb on - strand, within ABZR87_RS15495at 3261.709 kb on - strand, within ABZR87_RS15495at 3261.709 kb on - strand, within ABZR87_RS15495at 3261.709 kb on - strand, within ABZR87_RS15495at 3261.710 kb on + strand, within ABZR87_RS15495at 3261.711 kb on - strand, within ABZR87_RS15495at 3261.903 kb on + strand, within ABZR87_RS15495at 3261.903 kb on + strand, within ABZR87_RS15495at 3261.904 kb on - strand, within ABZR87_RS15495at 3261.949 kb on + strand, within ABZR87_RS15495at 3261.965 kb on + strand, within ABZR87_RS15495at 3261.965 kb on + strand, within ABZR87_RS15495at 3261.966 kb on - strand, within ABZR87_RS15495at 3261.966 kb on - strand, within ABZR87_RS15495at 3261.966 kb on - strand, within ABZR87_RS15495at 3261.966 kb on - strand, within ABZR87_RS15495at 3261.966 kb on - strand, within ABZR87_RS15495at 3262.098 kb on + strand, within ABZR87_RS15495at 3262.098 kb on + strand, within ABZR87_RS15495at 3262.098 kb on + strand, within ABZR87_RS15495at 3262.098 kb on + strand, within ABZR87_RS15495at 3262.098 kb on + strand, within ABZR87_RS15495at 3262.098 kb on + strand, within ABZR87_RS15495at 3262.098 kb on + strand, within ABZR87_RS15495at 3262.099 kb on - strand, within ABZR87_RS15495at 3262.099 kb on - strand, within ABZR87_RS15495at 3262.099 kb on - strand, within ABZR87_RS15495at 3262.099 kb on - strand, within ABZR87_RS15495at 3262.099 kb on - strand, within ABZR87_RS15495at 3262.099 kb on - strand, within ABZR87_RS15495at 3262.099 kb on - strand, within ABZR87_RS15495at 3262.099 kb on - strand, within ABZR87_RS15495at 3262.099 kb on - strand, within ABZR87_RS15495at 3262.165 kb on + strand, within ABZR87_RS15495at 3262.281 kb on + strand, within ABZR87_RS15495at 3262.281 kb on + strand, within ABZR87_RS15495at 3262.281 kb on + strand, within ABZR87_RS15495at 3262.281 kb on + strand, within ABZR87_RS15495at 3262.289 kb on + strand, within ABZR87_RS15495at 3262.289 kb on + strand, within ABZR87_RS15495at 3262.290 kb on - strand, within ABZR87_RS15495at 3262.290 kb on - strand, within ABZR87_RS15495at 3262.290 kb on - strand, within ABZR87_RS15495at 3262.345 kb on + strand, within ABZR87_RS15495at 3262.346 kb on - strand, within ABZR87_RS15495at 3262.346 kb on - strand, within ABZR87_RS15495at 3262.776 kb on - strandat 3262.884 kb on + strand, within ABZR87_RS15500at 3262.923 kb on + strand, within ABZR87_RS15500at 3262.924 kb on - strand, within ABZR87_RS15500at 3262.992 kb on - strand, within ABZR87_RS15500at 3263.299 kb on + strand, within ABZR87_RS15500at 3263.300 kb on - strand, within ABZR87_RS15500at 3263.321 kb on + strand, within ABZR87_RS15500at 3263.322 kb on - strand, within ABZR87_RS15500at 3263.324 kb on + strand, within ABZR87_RS15500at 3263.384 kb on + strand, within ABZR87_RS15500at 3263.385 kb on - strand, within ABZR87_RS15500at 3263.385 kb on - strand, within ABZR87_RS15500at 3263.385 kb on - strand, within ABZR87_RS15500at 3263.453 kb on + strand, within ABZR87_RS15500at 3263.466 kb on + strand, within ABZR87_RS15500at 3263.478 kb on + strand, within ABZR87_RS15500at 3263.478 kb on + strand, within ABZR87_RS15500at 3263.478 kb on + strand, within ABZR87_RS15500at 3263.478 kb on + strand, within ABZR87_RS15500at 3263.478 kb on + strand, within ABZR87_RS15500at 3263.479 kb on - strand, within ABZR87_RS15500at 3263.546 kb on + strand, within ABZR87_RS15500at 3263.739 kb on - strandat 3263.781 kb on + strandat 3263.781 kb on + strandat 3263.781 kb on + strandat 3263.782 kb on - strandat 3263.787 kb on + strandat 3263.787 kb on + strandat 3263.793 kb on + strandat 3263.794 kb on - strandat 3263.857 kb on + strandat 3263.858 kb on - strandat 3263.858 kb on - strandat 3263.858 kb on - strandat 3263.858 kb on - strandat 3263.863 kb on + strandat 3263.863 kb on + strandat 3263.864 kb on - strandat 3263.864 kb on - strandat 3263.864 kb on - strandat 3264.363 kb on - strand, within ABZR87_RS15505

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Per-strain Table

Position Strand Gene LocusTag Fraction Lauric (C)
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3,261,709 - ABZR87_RS15495 0.22 +2.5
3,261,709 - ABZR87_RS15495 0.22 +2.4
3,261,709 - ABZR87_RS15495 0.22 +3.3
3,261,709 - ABZR87_RS15495 0.22 +2.8
3,261,709 - ABZR87_RS15495 0.22 +2.3
3,261,710 + ABZR87_RS15495 0.22 +3.2
3,261,711 - ABZR87_RS15495 0.22 +2.1
3,261,903 + ABZR87_RS15495 0.37 +2.4
3,261,903 + ABZR87_RS15495 0.37 +3.1
3,261,904 - ABZR87_RS15495 0.37 +2.8
3,261,949 + ABZR87_RS15495 0.41 +3.5
3,261,965 + ABZR87_RS15495 0.42 +3.4
3,261,965 + ABZR87_RS15495 0.42 +2.8
3,261,966 - ABZR87_RS15495 0.42 +2.6
3,261,966 - ABZR87_RS15495 0.42 +3.0
3,261,966 - ABZR87_RS15495 0.42 +2.7
3,261,966 - ABZR87_RS15495 0.42 +2.6
3,261,966 - ABZR87_RS15495 0.42 +2.7
3,262,098 + ABZR87_RS15495 0.52 +2.8
3,262,098 + ABZR87_RS15495 0.52 +2.9
3,262,098 + ABZR87_RS15495 0.52 +2.6
3,262,098 + ABZR87_RS15495 0.52 +3.2
3,262,098 + ABZR87_RS15495 0.52 +2.6
3,262,098 + ABZR87_RS15495 0.52 +2.9
3,262,098 + ABZR87_RS15495 0.52 +3.0
3,262,099 - ABZR87_RS15495 0.52 +3.2
3,262,099 - ABZR87_RS15495 0.52 +2.8
3,262,099 - ABZR87_RS15495 0.52 +2.4
3,262,099 - ABZR87_RS15495 0.52 +2.8
3,262,099 - ABZR87_RS15495 0.52 +3.2
3,262,099 - ABZR87_RS15495 0.52 +2.4
3,262,099 - ABZR87_RS15495 0.52 +2.8
3,262,099 - ABZR87_RS15495 0.52 +3.4
3,262,099 - ABZR87_RS15495 0.52 +2.5
3,262,165 + ABZR87_RS15495 0.58 +2.1
3,262,281 + ABZR87_RS15495 0.67 +2.6
3,262,281 + ABZR87_RS15495 0.67 +2.6
3,262,281 + ABZR87_RS15495 0.67 +2.5
3,262,281 + ABZR87_RS15495 0.67 +3.0
3,262,289 + ABZR87_RS15495 0.67 +2.9
3,262,289 + ABZR87_RS15495 0.67 +2.6
3,262,290 - ABZR87_RS15495 0.67 +3.1
3,262,290 - ABZR87_RS15495 0.67 +2.6
3,262,290 - ABZR87_RS15495 0.67 +2.6
3,262,345 + ABZR87_RS15495 0.72 +2.7
3,262,346 - ABZR87_RS15495 0.72 +2.6
3,262,346 - ABZR87_RS15495 0.72 +3.9
3,262,776 - +1.7
3,262,884 + ABZR87_RS15500 0.17 +2.1
3,262,923 + ABZR87_RS15500 0.20 +0.3
3,262,924 - ABZR87_RS15500 0.21 +2.2
3,262,992 - ABZR87_RS15500 0.27 +0.9
3,263,299 + ABZR87_RS15500 0.56 +2.0
3,263,300 - ABZR87_RS15500 0.56 +1.7
3,263,321 + ABZR87_RS15500 0.58 +1.2
3,263,322 - ABZR87_RS15500 0.58 +1.8
3,263,324 + ABZR87_RS15500 0.58 +1.6
3,263,384 + ABZR87_RS15500 0.64 +1.7
3,263,385 - ABZR87_RS15500 0.64 +1.3
3,263,385 - ABZR87_RS15500 0.64 +2.3
3,263,385 - ABZR87_RS15500 0.64 +2.0
3,263,453 + ABZR87_RS15500 0.70 +2.5
3,263,466 + ABZR87_RS15500 0.71 +0.7
3,263,478 + ABZR87_RS15500 0.72 +1.0
3,263,478 + ABZR87_RS15500 0.72 +1.9
3,263,478 + ABZR87_RS15500 0.72 +1.7
3,263,478 + ABZR87_RS15500 0.72 +1.6
3,263,478 + ABZR87_RS15500 0.72 +1.0
3,263,479 - ABZR87_RS15500 0.72 -0.6
3,263,546 + ABZR87_RS15500 0.79 +2.5
3,263,739 - +2.2
3,263,781 + +1.2
3,263,781 + +0.8
3,263,781 + +0.9
3,263,782 - +0.8
3,263,787 + -0.7
3,263,787 + +0.9
3,263,793 + +1.5
3,263,794 - -0.8
3,263,857 + +1.2
3,263,858 - -0.0
3,263,858 - +0.2
3,263,858 - +1.1
3,263,858 - -0.5
3,263,863 + +0.1
3,263,863 + +0.5
3,263,864 - -0.6
3,263,864 - -0.3
3,263,864 - -0.6
3,264,363 - ABZR87_RS15505 0.14 -0.3

Or see this region's nucleotide sequence