Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS15125

Experiment: Lauric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS15120 and ABZR87_RS15125 are separated by 46 nucleotidesABZR87_RS15125 and ABZR87_RS15130 are separated by 76 nucleotides ABZR87_RS15120: ABZR87_RS15120 - aminopeptidase N, at 3,192,054 to 3,194,768 _RS15120 ABZR87_RS15125: ABZR87_RS15125 - class 1 fructose-bisphosphatase, at 3,194,815 to 3,195,831 _RS15125 ABZR87_RS15130: ABZR87_RS15130 - tRNA-Thr, at 3,195,908 to 3,195,983 _RS15130 Position (kb) 3194 3195 3196Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3194.013 kb on + strand, within ABZR87_RS15120at 3194.013 kb on + strand, within ABZR87_RS15120at 3194.013 kb on + strand, within ABZR87_RS15120at 3194.013 kb on + strand, within ABZR87_RS15120at 3194.014 kb on - strand, within ABZR87_RS15120at 3194.014 kb on - strand, within ABZR87_RS15120at 3194.205 kb on + strand, within ABZR87_RS15120at 3194.213 kb on - strand, within ABZR87_RS15120at 3194.213 kb on - strand, within ABZR87_RS15120at 3194.213 kb on - strand, within ABZR87_RS15120at 3194.256 kb on + strand, within ABZR87_RS15120at 3194.256 kb on + strand, within ABZR87_RS15120at 3194.256 kb on + strand, within ABZR87_RS15120at 3194.256 kb on + strand, within ABZR87_RS15120at 3194.256 kb on + strand, within ABZR87_RS15120at 3194.257 kb on - strand, within ABZR87_RS15120at 3194.257 kb on - strand, within ABZR87_RS15120at 3194.257 kb on - strand, within ABZR87_RS15120at 3194.257 kb on - strand, within ABZR87_RS15120at 3194.257 kb on - strand, within ABZR87_RS15120at 3194.316 kb on + strand, within ABZR87_RS15120at 3194.316 kb on + strand, within ABZR87_RS15120at 3194.316 kb on + strand, within ABZR87_RS15120at 3194.317 kb on - strand, within ABZR87_RS15120at 3194.317 kb on - strand, within ABZR87_RS15120at 3194.317 kb on - strand, within ABZR87_RS15120at 3194.317 kb on - strand, within ABZR87_RS15120at 3194.317 kb on - strand, within ABZR87_RS15120at 3194.317 kb on - strand, within ABZR87_RS15120at 3194.317 kb on - strand, within ABZR87_RS15120at 3194.317 kb on - strand, within ABZR87_RS15120at 3194.352 kb on + strand, within ABZR87_RS15120at 3194.450 kb on - strand, within ABZR87_RS15120at 3194.450 kb on - strand, within ABZR87_RS15120at 3194.661 kb on + strandat 3194.661 kb on + strandat 3194.661 kb on + strandat 3194.782 kb on + strandat 3194.783 kb on - strandat 3194.787 kb on + strandat 3194.788 kb on - strandat 3195.829 kb on + strandat 3195.842 kb on + strandat 3195.842 kb on + strandat 3195.843 kb on - strandat 3196.035 kb on - strandat 3196.035 kb on - strandat 3196.046 kb on - strandat 3196.074 kb on + strandat 3196.075 kb on - strandat 3196.086 kb on + strandat 3196.086 kb on + strandat 3196.122 kb on + strandat 3196.122 kb on + strandat 3196.123 kb on - strandat 3196.149 kb on - strandat 3196.149 kb on - strandat 3196.203 kb on + strandat 3196.203 kb on + strandat 3196.223 kb on + strandat 3196.224 kb on - strandat 3196.251 kb on + strandat 3196.251 kb on + strandat 3196.251 kb on + strandat 3196.251 kb on + strandat 3196.251 kb on + strandat 3196.310 kb on + strandat 3196.311 kb on - strandat 3196.339 kb on + strandat 3196.340 kb on - strandat 3196.340 kb on - strandat 3196.359 kb on + strandat 3196.360 kb on - strandat 3196.360 kb on - strandat 3196.376 kb on - strandat 3196.395 kb on - strandat 3196.541 kb on + strandat 3196.550 kb on + strandat 3196.550 kb on + strandat 3196.551 kb on - strandat 3196.650 kb on - strandat 3196.695 kb on + strandat 3196.696 kb on - strandat 3196.696 kb on - strandat 3196.696 kb on - strandat 3196.731 kb on + strandat 3196.731 kb on + strandat 3196.732 kb on - strandat 3196.760 kb on + strandat 3196.760 kb on + strandat 3196.761 kb on - strandat 3196.761 kb on - strandat 3196.761 kb on - strandat 3196.770 kb on + strandat 3196.770 kb on + strandat 3196.771 kb on - strandat 3196.816 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lauric (C)
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3,194,013 + ABZR87_RS15120 0.72 -0.0
3,194,013 + ABZR87_RS15120 0.72 -0.2
3,194,013 + ABZR87_RS15120 0.72 -0.1
3,194,013 + ABZR87_RS15120 0.72 +0.1
3,194,014 - ABZR87_RS15120 0.72 -1.0
3,194,014 - ABZR87_RS15120 0.72 -0.6
3,194,205 + ABZR87_RS15120 0.79 -0.5
3,194,213 - ABZR87_RS15120 0.80 +0.1
3,194,213 - ABZR87_RS15120 0.80 -2.0
3,194,213 - ABZR87_RS15120 0.80 -1.3
3,194,256 + ABZR87_RS15120 0.81 -0.8
3,194,256 + ABZR87_RS15120 0.81 -0.6
3,194,256 + ABZR87_RS15120 0.81 +0.0
3,194,256 + ABZR87_RS15120 0.81 +0.4
3,194,256 + ABZR87_RS15120 0.81 +0.4
3,194,257 - ABZR87_RS15120 0.81 -0.7
3,194,257 - ABZR87_RS15120 0.81 -0.3
3,194,257 - ABZR87_RS15120 0.81 +1.7
3,194,257 - ABZR87_RS15120 0.81 -0.1
3,194,257 - ABZR87_RS15120 0.81 +0.8
3,194,316 + ABZR87_RS15120 0.83 +0.4
3,194,316 + ABZR87_RS15120 0.83 -0.0
3,194,316 + ABZR87_RS15120 0.83 +0.3
3,194,317 - ABZR87_RS15120 0.83 -1.4
3,194,317 - ABZR87_RS15120 0.83 +0.9
3,194,317 - ABZR87_RS15120 0.83 +0.2
3,194,317 - ABZR87_RS15120 0.83 +1.4
3,194,317 - ABZR87_RS15120 0.83 -0.2
3,194,317 - ABZR87_RS15120 0.83 -0.9
3,194,317 - ABZR87_RS15120 0.83 -0.1
3,194,317 - ABZR87_RS15120 0.83 -2.9
3,194,352 + ABZR87_RS15120 0.85 +0.2
3,194,450 - ABZR87_RS15120 0.88 +1.8
3,194,450 - ABZR87_RS15120 0.88 -1.5
3,194,661 + +0.2
3,194,661 + -1.7
3,194,661 + -0.5
3,194,782 + -1.2
3,194,783 - +3.4
3,194,787 + -0.2
3,194,788 - +0.2
3,195,829 + -0.9
3,195,842 + +0.0
3,195,842 + -0.4
3,195,843 - +0.2
3,196,035 - -0.1
3,196,035 - +1.3
3,196,046 - +0.8
3,196,074 + -0.0
3,196,075 - -0.1
3,196,086 + -0.6
3,196,086 + -0.1
3,196,122 + +0.8
3,196,122 + +0.8
3,196,123 - -0.3
3,196,149 - +0.3
3,196,149 - -0.3
3,196,203 + -0.6
3,196,203 + +0.8
3,196,223 + -0.8
3,196,224 - +0.6
3,196,251 + +0.7
3,196,251 + -0.9
3,196,251 + +0.4
3,196,251 + -1.2
3,196,251 + +0.9
3,196,310 + +0.4
3,196,311 - +0.6
3,196,339 + +0.3
3,196,340 - -0.2
3,196,340 - -0.3
3,196,359 + +0.8
3,196,360 - -0.6
3,196,360 - +0.3
3,196,376 - -1.5
3,196,395 - -0.8
3,196,541 + -1.0
3,196,550 + +0.2
3,196,550 + +0.2
3,196,551 - +0.4
3,196,650 - -0.9
3,196,695 + +2.4
3,196,696 - -0.1
3,196,696 - -0.4
3,196,696 - +0.5
3,196,731 + -0.1
3,196,731 + +0.2
3,196,732 - -0.2
3,196,760 + -0.2
3,196,760 + +0.2
3,196,761 - +0.4
3,196,761 - -0.2
3,196,761 - -0.2
3,196,770 + +1.2
3,196,770 + -1.4
3,196,771 - -0.1
3,196,816 - -1.4

Or see this region's nucleotide sequence