Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS09725

Experiment: Lauric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS09720 and ABZR87_RS09725 are separated by 60 nucleotidesABZR87_RS09725 and ABZR87_RS09730 are separated by 471 nucleotidesABZR87_RS09730 and ABZR87_RS09735 are separated by 175 nucleotides ABZR87_RS09720: ABZR87_RS09720 - Kdo hydroxylase family protein, at 2,057,792 to 2,058,766 _RS09720 ABZR87_RS09725: ABZR87_RS09725 - amino acid ABC transporter substrate-binding protein, at 2,058,827 to 2,059,738 _RS09725 ABZR87_RS09730: ABZR87_RS09730 - hypothetical protein, at 2,060,210 to 2,060,416 _RS09730 ABZR87_RS09735: ABZR87_RS09735 - ATP-binding cassette domain-containing protein, at 2,060,592 to 2,062,502 _RS09735 Position (kb) 2058 2059 2060Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2057.972 kb on - strand, within ABZR87_RS09720at 2058.197 kb on + strand, within ABZR87_RS09720at 2058.210 kb on + strand, within ABZR87_RS09720at 2058.210 kb on + strand, within ABZR87_RS09720at 2058.210 kb on + strand, within ABZR87_RS09720at 2058.211 kb on - strand, within ABZR87_RS09720at 2058.475 kb on + strand, within ABZR87_RS09720at 2058.475 kb on + strand, within ABZR87_RS09720at 2058.475 kb on + strand, within ABZR87_RS09720at 2058.476 kb on - strand, within ABZR87_RS09720at 2058.500 kb on + strand, within ABZR87_RS09720at 2058.501 kb on - strand, within ABZR87_RS09720at 2058.501 kb on - strand, within ABZR87_RS09720at 2058.551 kb on + strand, within ABZR87_RS09720at 2058.551 kb on + strand, within ABZR87_RS09720at 2058.551 kb on + strand, within ABZR87_RS09720at 2058.552 kb on - strand, within ABZR87_RS09720at 2058.671 kb on + strandat 2058.672 kb on - strandat 2058.672 kb on - strandat 2058.828 kb on + strandat 2058.828 kb on + strandat 2058.829 kb on - strandat 2058.852 kb on + strandat 2058.852 kb on + strandat 2058.957 kb on + strand, within ABZR87_RS09725at 2058.957 kb on + strand, within ABZR87_RS09725at 2058.958 kb on - strand, within ABZR87_RS09725at 2058.958 kb on - strand, within ABZR87_RS09725at 2058.958 kb on - strand, within ABZR87_RS09725at 2058.989 kb on + strand, within ABZR87_RS09725at 2058.989 kb on + strand, within ABZR87_RS09725at 2059.035 kb on + strand, within ABZR87_RS09725at 2059.071 kb on + strand, within ABZR87_RS09725at 2059.107 kb on + strand, within ABZR87_RS09725at 2059.107 kb on + strand, within ABZR87_RS09725at 2059.344 kb on + strand, within ABZR87_RS09725at 2059.344 kb on + strand, within ABZR87_RS09725at 2059.344 kb on + strand, within ABZR87_RS09725at 2059.344 kb on + strand, within ABZR87_RS09725at 2059.345 kb on - strand, within ABZR87_RS09725at 2059.467 kb on + strand, within ABZR87_RS09725at 2059.467 kb on + strand, within ABZR87_RS09725at 2059.467 kb on + strand, within ABZR87_RS09725at 2059.467 kb on + strand, within ABZR87_RS09725at 2059.467 kb on + strand, within ABZR87_RS09725at 2059.467 kb on + strand, within ABZR87_RS09725at 2059.468 kb on - strand, within ABZR87_RS09725at 2059.468 kb on - strand, within ABZR87_RS09725at 2059.468 kb on - strand, within ABZR87_RS09725at 2059.468 kb on - strand, within ABZR87_RS09725at 2059.569 kb on + strand, within ABZR87_RS09725at 2059.570 kb on - strand, within ABZR87_RS09725at 2059.570 kb on - strand, within ABZR87_RS09725at 2059.744 kb on + strandat 2059.744 kb on + strandat 2059.744 kb on + strandat 2059.744 kb on + strandat 2059.745 kb on - strandat 2059.745 kb on - strandat 2059.774 kb on + strandat 2059.774 kb on + strandat 2059.774 kb on + strandat 2059.780 kb on + strandat 2059.780 kb on + strandat 2059.780 kb on + strandat 2059.781 kb on - strandat 2059.781 kb on - strandat 2059.781 kb on - strandat 2059.781 kb on - strandat 2059.816 kb on + strandat 2059.817 kb on - strandat 2059.862 kb on + strandat 2059.862 kb on + strandat 2059.862 kb on + strandat 2059.862 kb on + strandat 2059.862 kb on + strandat 2059.862 kb on + strandat 2059.862 kb on + strandat 2059.863 kb on - strandat 2059.863 kb on - strandat 2059.863 kb on - strandat 2059.863 kb on - strandat 2059.863 kb on - strandat 2060.110 kb on - strandat 2060.441 kb on - strandat 2060.485 kb on + strandat 2060.485 kb on + strandat 2060.487 kb on + strandat 2060.488 kb on - strandat 2060.488 kb on - strandat 2060.540 kb on + strandat 2060.540 kb on + strandat 2060.540 kb on + strandat 2060.540 kb on + strandat 2060.541 kb on - strandat 2060.541 kb on - strandat 2060.541 kb on - strandat 2060.541 kb on - strandat 2060.545 kb on + strandat 2060.545 kb on + strandat 2060.545 kb on + strandat 2060.546 kb on - strandat 2060.546 kb on - strandat 2060.564 kb on - strandat 2060.609 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lauric (C)
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2,057,972 - ABZR87_RS09720 0.18 -1.0
2,058,197 + ABZR87_RS09720 0.42 -1.3
2,058,210 + ABZR87_RS09720 0.43 -1.5
2,058,210 + ABZR87_RS09720 0.43 -1.9
2,058,210 + ABZR87_RS09720 0.43 +0.4
2,058,211 - ABZR87_RS09720 0.43 -1.6
2,058,475 + ABZR87_RS09720 0.70 -0.8
2,058,475 + ABZR87_RS09720 0.70 -0.9
2,058,475 + ABZR87_RS09720 0.70 -1.4
2,058,476 - ABZR87_RS09720 0.70 -2.0
2,058,500 + ABZR87_RS09720 0.73 -0.9
2,058,501 - ABZR87_RS09720 0.73 +0.2
2,058,501 - ABZR87_RS09720 0.73 -0.9
2,058,551 + ABZR87_RS09720 0.78 -2.1
2,058,551 + ABZR87_RS09720 0.78 -1.0
2,058,551 + ABZR87_RS09720 0.78 -1.0
2,058,552 - ABZR87_RS09720 0.78 -1.1
2,058,671 + -1.4
2,058,672 - -0.4
2,058,672 - +0.1
2,058,828 + -0.0
2,058,828 + +0.1
2,058,829 - +0.5
2,058,852 + +0.2
2,058,852 + -0.4
2,058,957 + ABZR87_RS09725 0.14 +0.2
2,058,957 + ABZR87_RS09725 0.14 +0.9
2,058,958 - ABZR87_RS09725 0.14 -0.7
2,058,958 - ABZR87_RS09725 0.14 -0.5
2,058,958 - ABZR87_RS09725 0.14 -1.5
2,058,989 + ABZR87_RS09725 0.18 +0.6
2,058,989 + ABZR87_RS09725 0.18 -2.3
2,059,035 + ABZR87_RS09725 0.23 +1.1
2,059,071 + ABZR87_RS09725 0.27 +0.1
2,059,107 + ABZR87_RS09725 0.31 -3.1
2,059,107 + ABZR87_RS09725 0.31 +0.9
2,059,344 + ABZR87_RS09725 0.57 -0.1
2,059,344 + ABZR87_RS09725 0.57 +0.5
2,059,344 + ABZR87_RS09725 0.57 +0.8
2,059,344 + ABZR87_RS09725 0.57 +0.4
2,059,345 - ABZR87_RS09725 0.57 -0.0
2,059,467 + ABZR87_RS09725 0.70 +0.2
2,059,467 + ABZR87_RS09725 0.70 -0.3
2,059,467 + ABZR87_RS09725 0.70 +0.5
2,059,467 + ABZR87_RS09725 0.70 -0.6
2,059,467 + ABZR87_RS09725 0.70 -0.3
2,059,467 + ABZR87_RS09725 0.70 -0.4
2,059,468 - ABZR87_RS09725 0.70 +0.2
2,059,468 - ABZR87_RS09725 0.70 -0.1
2,059,468 - ABZR87_RS09725 0.70 -0.1
2,059,468 - ABZR87_RS09725 0.70 -0.5
2,059,569 + ABZR87_RS09725 0.81 -0.5
2,059,570 - ABZR87_RS09725 0.81 -0.4
2,059,570 - ABZR87_RS09725 0.81 -0.4
2,059,744 + +0.3
2,059,744 + -0.6
2,059,744 + -0.1
2,059,744 + -0.7
2,059,745 - -0.2
2,059,745 - +1.4
2,059,774 + -1.4
2,059,774 + +0.9
2,059,774 + +0.1
2,059,780 + +0.3
2,059,780 + -0.1
2,059,780 + -0.7
2,059,781 - +1.1
2,059,781 - -0.1
2,059,781 - -1.5
2,059,781 - +0.2
2,059,816 + +1.6
2,059,817 - +0.9
2,059,862 + +0.9
2,059,862 + -0.6
2,059,862 + -0.6
2,059,862 + -0.6
2,059,862 + +0.7
2,059,862 + +0.2
2,059,862 + -0.8
2,059,863 - -2.1
2,059,863 - +1.0
2,059,863 - -0.5
2,059,863 - +0.1
2,059,863 - +0.3
2,060,110 - +0.3
2,060,441 - -0.8
2,060,485 + +0.1
2,060,485 + -0.6
2,060,487 + -0.2
2,060,488 - +0.7
2,060,488 - +0.9
2,060,540 + -0.5
2,060,540 + -0.5
2,060,540 + +1.9
2,060,540 + +0.4
2,060,541 - -0.7
2,060,541 - -0.4
2,060,541 - +1.3
2,060,541 - +0.1
2,060,545 + +1.9
2,060,545 + -0.5
2,060,545 + -0.4
2,060,546 - +0.4
2,060,546 - -0.2
2,060,564 - -0.7
2,060,609 + -0.6

Or see this region's nucleotide sequence