Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS08950

Experiment: Lauric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS08940 and ABZR87_RS08945 overlap by 1 nucleotidesABZR87_RS08945 and ABZR87_RS08950 are separated by 170 nucleotidesABZR87_RS08950 and ABZR87_RS08955 are separated by 134 nucleotides ABZR87_RS08940: ABZR87_RS08940 - PilW family protein, at 1,898,854 to 1,899,810 _RS08940 ABZR87_RS08945: ABZR87_RS08945 - type IV pilus modification protein PilV, at 1,899,810 to 1,900,445 _RS08945 ABZR87_RS08950: ABZR87_RS08950 - transcriptional regulator NrdR, at 1,900,616 to 1,901,065 _RS08950 ABZR87_RS08955: ABZR87_RS08955 - serine hydroxymethyltransferase, at 1,901,200 to 1,902,447 _RS08955 Position (kb) 1900 1901 1902Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1899.677 kb on + strand, within ABZR87_RS08940at 1899.677 kb on + strand, within ABZR87_RS08940at 1899.677 kb on + strand, within ABZR87_RS08940at 1899.677 kb on + strand, within ABZR87_RS08940at 1899.678 kb on - strand, within ABZR87_RS08940at 1899.678 kb on - strand, within ABZR87_RS08940at 1899.678 kb on - strand, within ABZR87_RS08940at 1899.698 kb on + strand, within ABZR87_RS08940at 1899.698 kb on + strand, within ABZR87_RS08940at 1899.698 kb on + strand, within ABZR87_RS08940at 1899.699 kb on - strand, within ABZR87_RS08940at 1899.699 kb on - strand, within ABZR87_RS08940at 1899.699 kb on - strand, within ABZR87_RS08940at 1899.825 kb on - strandat 1899.972 kb on - strand, within ABZR87_RS08945at 1900.009 kb on + strand, within ABZR87_RS08945at 1900.009 kb on + strand, within ABZR87_RS08945at 1900.009 kb on + strand, within ABZR87_RS08945at 1900.014 kb on + strand, within ABZR87_RS08945at 1900.015 kb on - strand, within ABZR87_RS08945at 1900.113 kb on + strand, within ABZR87_RS08945at 1900.113 kb on + strand, within ABZR87_RS08945at 1900.114 kb on - strand, within ABZR87_RS08945at 1900.219 kb on + strand, within ABZR87_RS08945at 1900.219 kb on + strand, within ABZR87_RS08945at 1900.219 kb on + strand, within ABZR87_RS08945at 1900.220 kb on - strand, within ABZR87_RS08945at 1900.274 kb on + strand, within ABZR87_RS08945at 1900.275 kb on - strand, within ABZR87_RS08945at 1900.275 kb on - strand, within ABZR87_RS08945at 1900.306 kb on + strand, within ABZR87_RS08945at 1900.306 kb on + strand, within ABZR87_RS08945at 1900.306 kb on + strand, within ABZR87_RS08945at 1900.307 kb on - strand, within ABZR87_RS08945at 1900.307 kb on - strand, within ABZR87_RS08945at 1900.307 kb on - strand, within ABZR87_RS08945at 1900.307 kb on - strand, within ABZR87_RS08945at 1900.307 kb on - strand, within ABZR87_RS08945at 1900.307 kb on - strand, within ABZR87_RS08945at 1900.307 kb on - strand, within ABZR87_RS08945at 1900.331 kb on - strand, within ABZR87_RS08945at 1900.341 kb on + strand, within ABZR87_RS08945at 1900.341 kb on + strand, within ABZR87_RS08945at 1900.341 kb on + strand, within ABZR87_RS08945at 1900.341 kb on + strand, within ABZR87_RS08945at 1900.342 kb on - strand, within ABZR87_RS08945at 1900.515 kb on + strandat 1900.539 kb on + strandat 1900.539 kb on + strandat 1900.539 kb on + strandat 1900.540 kb on - strandat 1900.588 kb on + strandat 1900.589 kb on - strandat 1900.617 kb on + strandat 1900.617 kb on + strandat 1900.617 kb on + strandat 1900.617 kb on + strandat 1900.675 kb on - strand, within ABZR87_RS08950at 1900.695 kb on + strand, within ABZR87_RS08950at 1900.696 kb on - strand, within ABZR87_RS08950at 1900.944 kb on + strand, within ABZR87_RS08950at 1900.944 kb on + strand, within ABZR87_RS08950at 1900.944 kb on + strand, within ABZR87_RS08950at 1900.944 kb on + strand, within ABZR87_RS08950at 1900.945 kb on - strand, within ABZR87_RS08950at 1900.945 kb on - strand, within ABZR87_RS08950at 1901.021 kb on - strandat 1901.021 kb on - strandat 1901.106 kb on + strandat 1901.106 kb on + strandat 1901.106 kb on + strandat 1901.162 kb on + strandat 1901.162 kb on + strandat 1901.162 kb on + strandat 1901.163 kb on - strandat 1901.163 kb on - strandat 1901.163 kb on - strandat 1901.163 kb on - strandat 1901.165 kb on + strandat 1901.165 kb on + strandat 1901.165 kb on + strandat 1901.165 kb on + strandat 1901.165 kb on + strandat 1901.165 kb on + strandat 1901.165 kb on + strandat 1901.165 kb on + strandat 1901.165 kb on + strandat 1901.166 kb on - strandat 1901.166 kb on - strandat 1901.166 kb on - strandat 1901.166 kb on - strandat 1901.166 kb on - strandat 1901.208 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lauric (C)
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1,899,677 + ABZR87_RS08940 0.86 +0.4
1,899,677 + ABZR87_RS08940 0.86 -0.9
1,899,677 + ABZR87_RS08940 0.86 +0.9
1,899,677 + ABZR87_RS08940 0.86 +0.6
1,899,678 - ABZR87_RS08940 0.86 +0.3
1,899,678 - ABZR87_RS08940 0.86 -0.1
1,899,678 - ABZR87_RS08940 0.86 +0.1
1,899,698 + ABZR87_RS08940 0.88 -0.9
1,899,698 + ABZR87_RS08940 0.88 -0.4
1,899,698 + ABZR87_RS08940 0.88 -0.0
1,899,699 - ABZR87_RS08940 0.88 -0.1
1,899,699 - ABZR87_RS08940 0.88 -0.4
1,899,699 - ABZR87_RS08940 0.88 +1.9
1,899,825 - +0.7
1,899,972 - ABZR87_RS08945 0.25 +0.4
1,900,009 + ABZR87_RS08945 0.31 -0.4
1,900,009 + ABZR87_RS08945 0.31 -0.1
1,900,009 + ABZR87_RS08945 0.31 +0.1
1,900,014 + ABZR87_RS08945 0.32 +0.2
1,900,015 - ABZR87_RS08945 0.32 -1.7
1,900,113 + ABZR87_RS08945 0.48 -0.6
1,900,113 + ABZR87_RS08945 0.48 +0.8
1,900,114 - ABZR87_RS08945 0.48 +0.6
1,900,219 + ABZR87_RS08945 0.64 +0.1
1,900,219 + ABZR87_RS08945 0.64 +0.2
1,900,219 + ABZR87_RS08945 0.64 +0.6
1,900,220 - ABZR87_RS08945 0.64 +0.3
1,900,274 + ABZR87_RS08945 0.73 +0.6
1,900,275 - ABZR87_RS08945 0.73 +0.2
1,900,275 - ABZR87_RS08945 0.73 -1.1
1,900,306 + ABZR87_RS08945 0.78 +0.2
1,900,306 + ABZR87_RS08945 0.78 -0.8
1,900,306 + ABZR87_RS08945 0.78 -0.4
1,900,307 - ABZR87_RS08945 0.78 -0.8
1,900,307 - ABZR87_RS08945 0.78 -0.0
1,900,307 - ABZR87_RS08945 0.78 -0.5
1,900,307 - ABZR87_RS08945 0.78 +0.4
1,900,307 - ABZR87_RS08945 0.78 -0.2
1,900,307 - ABZR87_RS08945 0.78 +1.4
1,900,307 - ABZR87_RS08945 0.78 +0.1
1,900,331 - ABZR87_RS08945 0.82 +0.3
1,900,341 + ABZR87_RS08945 0.83 +0.8
1,900,341 + ABZR87_RS08945 0.83 -0.0
1,900,341 + ABZR87_RS08945 0.83 -0.3
1,900,341 + ABZR87_RS08945 0.83 -0.4
1,900,342 - ABZR87_RS08945 0.84 +0.1
1,900,515 + +0.5
1,900,539 + +0.3
1,900,539 + +0.2
1,900,539 + -0.8
1,900,540 - -0.6
1,900,588 + +0.2
1,900,589 - -0.5
1,900,617 + +0.5
1,900,617 + -0.7
1,900,617 + +0.8
1,900,617 + +0.6
1,900,675 - ABZR87_RS08950 0.13 +0.2
1,900,695 + ABZR87_RS08950 0.18 -3.9
1,900,696 - ABZR87_RS08950 0.18 -2.3
1,900,944 + ABZR87_RS08950 0.73 -1.9
1,900,944 + ABZR87_RS08950 0.73 -1.6
1,900,944 + ABZR87_RS08950 0.73 -0.2
1,900,944 + ABZR87_RS08950 0.73 +0.3
1,900,945 - ABZR87_RS08950 0.73 +0.4
1,900,945 - ABZR87_RS08950 0.73 -2.7
1,901,021 - -1.4
1,901,021 - -1.5
1,901,106 + -0.2
1,901,106 + -1.5
1,901,106 + -0.0
1,901,162 + -0.9
1,901,162 + -0.1
1,901,162 + -1.4
1,901,163 - +0.3
1,901,163 - -0.1
1,901,163 - +0.0
1,901,163 - +0.2
1,901,165 + +0.8
1,901,165 + -0.3
1,901,165 + -0.8
1,901,165 + -2.0
1,901,165 + +1.2
1,901,165 + -1.7
1,901,165 + -1.4
1,901,165 + +0.7
1,901,165 + -1.3
1,901,166 - -0.3
1,901,166 - -0.6
1,901,166 - +0.8
1,901,166 - +1.2
1,901,166 - +1.0
1,901,208 - +0.7

Or see this region's nucleotide sequence