Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS06380

Experiment: Lauric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS06370 and ABZR87_RS06375 are separated by 31 nucleotidesABZR87_RS06375 and ABZR87_RS06380 are separated by 141 nucleotidesABZR87_RS06380 and ABZR87_RS06385 are separated by 219 nucleotides ABZR87_RS06370: ABZR87_RS06370 - ferritin-like domain-containing protein, at 1,360,047 to 1,360,604 _RS06370 ABZR87_RS06375: ABZR87_RS06375 - DUF883 family protein, at 1,360,636 to 1,361,061 _RS06375 ABZR87_RS06380: ABZR87_RS06380 - DUF1328 family protein, at 1,361,203 to 1,361,376 _RS06380 ABZR87_RS06385: ABZR87_RS06385 - CHASE3 domain-containing protein, at 1,361,596 to 1,363,038 _RS06385 Position (kb) 1361 1362Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1360.492 kb on + strand, within ABZR87_RS06370at 1360.492 kb on + strand, within ABZR87_RS06370at 1360.492 kb on + strand, within ABZR87_RS06370at 1360.493 kb on - strand, within ABZR87_RS06370at 1360.630 kb on + strandat 1360.630 kb on + strandat 1360.630 kb on + strandat 1360.637 kb on + strandat 1360.637 kb on + strandat 1360.638 kb on - strandat 1360.638 kb on - strandat 1360.717 kb on + strand, within ABZR87_RS06375at 1361.165 kb on + strandat 1361.166 kb on - strandat 1361.166 kb on - strandat 1361.198 kb on + strandat 1361.199 kb on - strandat 1361.219 kb on + strandat 1361.260 kb on + strand, within ABZR87_RS06380at 1361.260 kb on + strand, within ABZR87_RS06380at 1361.260 kb on + strand, within ABZR87_RS06380at 1361.260 kb on + strand, within ABZR87_RS06380at 1361.260 kb on + strand, within ABZR87_RS06380at 1361.260 kb on + strand, within ABZR87_RS06380at 1361.260 kb on + strand, within ABZR87_RS06380at 1361.261 kb on - strand, within ABZR87_RS06380at 1361.261 kb on - strand, within ABZR87_RS06380at 1361.265 kb on - strand, within ABZR87_RS06380at 1361.289 kb on + strand, within ABZR87_RS06380at 1361.316 kb on + strand, within ABZR87_RS06380at 1361.447 kb on + strandat 1361.448 kb on - strandat 1361.580 kb on + strandat 1361.701 kb on + strandat 1361.815 kb on + strand, within ABZR87_RS06385at 1361.815 kb on + strand, within ABZR87_RS06385at 1361.815 kb on + strand, within ABZR87_RS06385at 1361.815 kb on + strand, within ABZR87_RS06385at 1361.816 kb on - strand, within ABZR87_RS06385at 1361.816 kb on - strand, within ABZR87_RS06385at 1361.816 kb on - strand, within ABZR87_RS06385at 1361.827 kb on + strand, within ABZR87_RS06385at 1361.827 kb on + strand, within ABZR87_RS06385at 1361.828 kb on - strand, within ABZR87_RS06385at 1361.828 kb on - strand, within ABZR87_RS06385at 1361.828 kb on - strand, within ABZR87_RS06385at 1361.882 kb on - strand, within ABZR87_RS06385at 1361.971 kb on + strand, within ABZR87_RS06385at 1361.971 kb on + strand, within ABZR87_RS06385at 1361.971 kb on + strand, within ABZR87_RS06385at 1361.971 kb on + strand, within ABZR87_RS06385at 1361.971 kb on + strand, within ABZR87_RS06385at 1361.972 kb on - strand, within ABZR87_RS06385at 1361.972 kb on - strand, within ABZR87_RS06385at 1362.282 kb on + strand, within ABZR87_RS06385

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Per-strain Table

Position Strand Gene LocusTag Fraction Lauric (C)
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1,360,492 + ABZR87_RS06370 0.80 +0.4
1,360,492 + ABZR87_RS06370 0.80 +0.8
1,360,492 + ABZR87_RS06370 0.80 +0.4
1,360,493 - ABZR87_RS06370 0.80 +1.0
1,360,630 + +0.9
1,360,630 + +0.3
1,360,630 + +1.7
1,360,637 + +0.9
1,360,637 + +1.5
1,360,638 - -0.5
1,360,638 - +0.3
1,360,717 + ABZR87_RS06375 0.19 +0.2
1,361,165 + -0.8
1,361,166 - -0.8
1,361,166 - +0.3
1,361,198 + +0.6
1,361,199 - +0.3
1,361,219 + -0.1
1,361,260 + ABZR87_RS06380 0.33 -1.1
1,361,260 + ABZR87_RS06380 0.33 -1.6
1,361,260 + ABZR87_RS06380 0.33 +0.8
1,361,260 + ABZR87_RS06380 0.33 +0.8
1,361,260 + ABZR87_RS06380 0.33 +1.1
1,361,260 + ABZR87_RS06380 0.33 -0.4
1,361,260 + ABZR87_RS06380 0.33 -0.1
1,361,261 - ABZR87_RS06380 0.33 +0.3
1,361,261 - ABZR87_RS06380 0.33 -0.9
1,361,265 - ABZR87_RS06380 0.36 +0.4
1,361,289 + ABZR87_RS06380 0.49 -0.3
1,361,316 + ABZR87_RS06380 0.65 +0.1
1,361,447 + +0.2
1,361,448 - +1.6
1,361,580 + +0.1
1,361,701 + -2.6
1,361,815 + ABZR87_RS06385 0.15 -1.4
1,361,815 + ABZR87_RS06385 0.15 -3.4
1,361,815 + ABZR87_RS06385 0.15 -0.5
1,361,815 + ABZR87_RS06385 0.15 -3.2
1,361,816 - ABZR87_RS06385 0.15 -2.5
1,361,816 - ABZR87_RS06385 0.15 -4.0
1,361,816 - ABZR87_RS06385 0.15 -4.2
1,361,827 + ABZR87_RS06385 0.16 -4.4
1,361,827 + ABZR87_RS06385 0.16 -1.6
1,361,828 - ABZR87_RS06385 0.16 -1.4
1,361,828 - ABZR87_RS06385 0.16 -3.3
1,361,828 - ABZR87_RS06385 0.16 -3.0
1,361,882 - ABZR87_RS06385 0.20 -3.2
1,361,971 + ABZR87_RS06385 0.26 -3.7
1,361,971 + ABZR87_RS06385 0.26 -2.7
1,361,971 + ABZR87_RS06385 0.26 -4.2
1,361,971 + ABZR87_RS06385 0.26 -4.1
1,361,971 + ABZR87_RS06385 0.26 -2.0
1,361,972 - ABZR87_RS06385 0.26 -4.2
1,361,972 - ABZR87_RS06385 0.26 -1.8
1,362,282 + ABZR87_RS06385 0.48 -3.8

Or see this region's nucleotide sequence