Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS03520

Experiment: Lauric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS03515 and ABZR87_RS03520 are separated by 230 nucleotidesABZR87_RS03520 and ABZR87_RS03525 are separated by 81 nucleotides ABZR87_RS03515: ABZR87_RS03515 - Crp/Fnr family transcriptional regulator, at 737,351 to 738,082 _RS03515 ABZR87_RS03520: ABZR87_RS03520 - ferritin-like domain-containing protein, at 738,313 to 739,125 _RS03520 ABZR87_RS03525: ABZR87_RS03525 - methyl-accepting chemotaxis protein, at 739,207 to 741,195 _RS03525 Position (kb) 738 739 740Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 737.507 kb on + strand, within ABZR87_RS03515at 737.508 kb on - strand, within ABZR87_RS03515at 737.508 kb on - strand, within ABZR87_RS03515at 737.621 kb on + strand, within ABZR87_RS03515at 737.621 kb on + strand, within ABZR87_RS03515at 737.622 kb on - strand, within ABZR87_RS03515at 737.622 kb on - strand, within ABZR87_RS03515at 737.622 kb on - strand, within ABZR87_RS03515at 737.763 kb on - strand, within ABZR87_RS03515at 737.975 kb on + strand, within ABZR87_RS03515at 737.975 kb on + strand, within ABZR87_RS03515at 737.976 kb on - strand, within ABZR87_RS03515at 738.086 kb on + strandat 738.086 kb on + strandat 738.086 kb on + strandat 738.086 kb on + strandat 738.086 kb on + strandat 738.086 kb on + strandat 738.086 kb on + strandat 738.086 kb on + strandat 738.086 kb on + strandat 738.087 kb on - strandat 738.087 kb on - strandat 738.087 kb on - strandat 738.223 kb on + strandat 738.225 kb on - strandat 738.340 kb on + strandat 738.341 kb on - strandat 738.388 kb on + strandat 738.388 kb on + strandat 738.433 kb on + strand, within ABZR87_RS03520at 738.433 kb on + strand, within ABZR87_RS03520at 738.433 kb on + strand, within ABZR87_RS03520at 738.434 kb on - strand, within ABZR87_RS03520at 738.454 kb on + strand, within ABZR87_RS03520at 738.454 kb on + strand, within ABZR87_RS03520at 738.455 kb on - strand, within ABZR87_RS03520at 738.455 kb on - strand, within ABZR87_RS03520at 738.455 kb on - strand, within ABZR87_RS03520at 738.455 kb on - strand, within ABZR87_RS03520at 738.455 kb on - strand, within ABZR87_RS03520at 738.457 kb on + strand, within ABZR87_RS03520at 738.457 kb on + strand, within ABZR87_RS03520at 738.457 kb on + strand, within ABZR87_RS03520at 738.458 kb on - strand, within ABZR87_RS03520at 738.458 kb on - strand, within ABZR87_RS03520at 738.458 kb on - strand, within ABZR87_RS03520at 738.541 kb on + strand, within ABZR87_RS03520at 738.583 kb on + strand, within ABZR87_RS03520at 738.584 kb on - strand, within ABZR87_RS03520at 738.697 kb on + strand, within ABZR87_RS03520at 738.698 kb on - strand, within ABZR87_RS03520at 738.698 kb on - strand, within ABZR87_RS03520at 738.787 kb on + strand, within ABZR87_RS03520at 738.787 kb on + strand, within ABZR87_RS03520at 738.787 kb on + strand, within ABZR87_RS03520at 738.787 kb on + strand, within ABZR87_RS03520at 738.787 kb on + strand, within ABZR87_RS03520at 738.787 kb on + strand, within ABZR87_RS03520at 738.787 kb on + strand, within ABZR87_RS03520at 738.787 kb on + strand, within ABZR87_RS03520at 738.787 kb on + strand, within ABZR87_RS03520at 738.788 kb on - strand, within ABZR87_RS03520at 738.788 kb on - strand, within ABZR87_RS03520at 738.788 kb on - strand, within ABZR87_RS03520at 738.788 kb on - strand, within ABZR87_RS03520at 738.788 kb on - strand, within ABZR87_RS03520at 739.006 kb on + strand, within ABZR87_RS03520at 739.006 kb on + strand, within ABZR87_RS03520at 739.007 kb on - strand, within ABZR87_RS03520at 739.007 kb on - strand, within ABZR87_RS03520at 739.007 kb on - strand, within ABZR87_RS03520at 739.124 kb on - strandat 739.124 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lauric (C)
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737,507 + ABZR87_RS03515 0.21 +0.2
737,508 - ABZR87_RS03515 0.21 -0.2
737,508 - ABZR87_RS03515 0.21 +1.2
737,621 + ABZR87_RS03515 0.37 +0.5
737,621 + ABZR87_RS03515 0.37 +1.6
737,622 - ABZR87_RS03515 0.37 -0.6
737,622 - ABZR87_RS03515 0.37 +0.2
737,622 - ABZR87_RS03515 0.37 -2.5
737,763 - ABZR87_RS03515 0.56 -0.0
737,975 + ABZR87_RS03515 0.85 +0.1
737,975 + ABZR87_RS03515 0.85 -0.1
737,976 - ABZR87_RS03515 0.85 -0.3
738,086 + +0.7
738,086 + -0.4
738,086 + +0.6
738,086 + +0.3
738,086 + +0.1
738,086 + +1.0
738,086 + +0.8
738,086 + -1.0
738,086 + +0.6
738,087 - -0.3
738,087 - +1.6
738,087 - +0.4
738,223 + +1.1
738,225 - -1.4
738,340 + -0.6
738,341 - -0.9
738,388 + -2.7
738,388 + -1.3
738,433 + ABZR87_RS03520 0.15 -0.5
738,433 + ABZR87_RS03520 0.15 +0.0
738,433 + ABZR87_RS03520 0.15 -1.3
738,434 - ABZR87_RS03520 0.15 +0.7
738,454 + ABZR87_RS03520 0.17 +0.1
738,454 + ABZR87_RS03520 0.17 -1.9
738,455 - ABZR87_RS03520 0.17 -1.0
738,455 - ABZR87_RS03520 0.17 -1.2
738,455 - ABZR87_RS03520 0.17 +1.3
738,455 - ABZR87_RS03520 0.17 -2.3
738,455 - ABZR87_RS03520 0.17 -1.7
738,457 + ABZR87_RS03520 0.18 -2.1
738,457 + ABZR87_RS03520 0.18 +0.1
738,457 + ABZR87_RS03520 0.18 -0.8
738,458 - ABZR87_RS03520 0.18 -0.3
738,458 - ABZR87_RS03520 0.18 -1.4
738,458 - ABZR87_RS03520 0.18 -1.3
738,541 + ABZR87_RS03520 0.28 -1.3
738,583 + ABZR87_RS03520 0.33 +1.3
738,584 - ABZR87_RS03520 0.33 -0.1
738,697 + ABZR87_RS03520 0.47 -1.2
738,698 - ABZR87_RS03520 0.47 -0.4
738,698 - ABZR87_RS03520 0.47 +0.3
738,787 + ABZR87_RS03520 0.58 -1.4
738,787 + ABZR87_RS03520 0.58 -1.0
738,787 + ABZR87_RS03520 0.58 -1.9
738,787 + ABZR87_RS03520 0.58 -1.6
738,787 + ABZR87_RS03520 0.58 +0.0
738,787 + ABZR87_RS03520 0.58 -0.7
738,787 + ABZR87_RS03520 0.58 -1.4
738,787 + ABZR87_RS03520 0.58 -2.0
738,787 + ABZR87_RS03520 0.58 -1.7
738,788 - ABZR87_RS03520 0.58 -1.3
738,788 - ABZR87_RS03520 0.58 +0.0
738,788 - ABZR87_RS03520 0.58 -0.4
738,788 - ABZR87_RS03520 0.58 -1.7
738,788 - ABZR87_RS03520 0.58 -3.8
739,006 + ABZR87_RS03520 0.85 +0.8
739,006 + ABZR87_RS03520 0.85 +0.1
739,007 - ABZR87_RS03520 0.85 -0.9
739,007 - ABZR87_RS03520 0.85 +0.9
739,007 - ABZR87_RS03520 0.85 -1.0
739,124 - -0.2
739,124 - -1.3

Or see this region's nucleotide sequence