Experiment: Lauric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00015 and ABZR87_RS00020 are separated by 237 nucleotides ABZR87_RS00020 and ABZR87_RS00025 are separated by 39 nucleotides ABZR87_RS00025 and ABZR87_RS00030 are separated by 39 nucleotides ABZR87_RS00030 and ABZR87_RS00035 are separated by 48 nucleotides
ABZR87_RS00015: ABZR87_RS00015 - autotransporter assembly complex family protein, at 5,079 to 6,866
_RS00015
ABZR87_RS00020: ABZR87_RS00020 - DUF3460 family protein, at 7,104 to 7,292
_RS00020
ABZR87_RS00025: ABZR87_RS00025 - ScpA family protein, at 7,332 to 8,213
_RS00025
ABZR87_RS00030: ABZR87_RS00030 - pantoate--beta-alanine ligase, at 8,253 to 9,104
_RS00030
ABZR87_RS00035: ABZR87_RS00035 - ParA family protein, at 9,153 to 9,818
_RS00035
Position (kb)
7
8
9 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 6.464 kb on + strand, within ABZR87_RS00015 at 6.494 kb on + strand, within ABZR87_RS00015 at 6.494 kb on + strand, within ABZR87_RS00015 at 6.577 kb on + strand, within ABZR87_RS00015 at 6.577 kb on + strand, within ABZR87_RS00015 at 6.578 kb on - strand, within ABZR87_RS00015 at 6.578 kb on - strand, within ABZR87_RS00015 at 6.631 kb on + strand, within ABZR87_RS00015 at 6.631 kb on + strand, within ABZR87_RS00015 at 6.631 kb on + strand, within ABZR87_RS00015 at 6.631 kb on + strand, within ABZR87_RS00015 at 6.631 kb on + strand, within ABZR87_RS00015 at 6.632 kb on - strand, within ABZR87_RS00015 at 6.632 kb on - strand, within ABZR87_RS00015 at 6.632 kb on - strand, within ABZR87_RS00015 at 6.632 kb on - strand, within ABZR87_RS00015 at 6.632 kb on - strand, within ABZR87_RS00015 at 6.632 kb on - strand, within ABZR87_RS00015 at 6.632 kb on - strand, within ABZR87_RS00015 at 6.670 kb on + strand, within ABZR87_RS00015 at 6.740 kb on - strand at 6.740 kb on - strand at 6.811 kb on + strand at 6.812 kb on - strand at 6.918 kb on + strand at 6.918 kb on + strand at 6.918 kb on + strand at 6.918 kb on + strand at 6.919 kb on - strand at 6.919 kb on - strand at 6.928 kb on + strand at 6.929 kb on - strand at 6.929 kb on - strand at 6.965 kb on + strand at 6.965 kb on + strand at 6.966 kb on - strand at 7.031 kb on + strand at 7.036 kb on + strand at 7.036 kb on + strand at 7.037 kb on - strand at 7.097 kb on + strand at 7.113 kb on + strand at 7.113 kb on + strand at 7.113 kb on + strand at 7.272 kb on + strand, within ABZR87_RS00020 at 7.272 kb on + strand, within ABZR87_RS00020 at 7.272 kb on + strand, within ABZR87_RS00020 at 7.272 kb on + strand, within ABZR87_RS00020 at 7.272 kb on + strand, within ABZR87_RS00020 at 7.278 kb on + strand at 7.278 kb on + strand at 7.278 kb on + strand at 8.199 kb on + strand at 8.211 kb on + strand at 8.211 kb on + strand at 8.211 kb on + strand at 8.243 kb on + strand at 8.243 kb on + strand at 8.252 kb on + strand at 8.252 kb on + strand at 9.171 kb on - strand at 9.171 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lauric (C) remove 6,464 + ABZR87_RS00015 0.77 +1.2 6,494 + ABZR87_RS00015 0.79 +1.3 6,494 + ABZR87_RS00015 0.79 +1.5 6,577 + ABZR87_RS00015 0.84 +1.0 6,577 + ABZR87_RS00015 0.84 +1.3 6,578 - ABZR87_RS00015 0.84 +0.8 6,578 - ABZR87_RS00015 0.84 +0.8 6,631 + ABZR87_RS00015 0.87 +1.3 6,631 + ABZR87_RS00015 0.87 +1.4 6,631 + ABZR87_RS00015 0.87 +2.4 6,631 + ABZR87_RS00015 0.87 +2.8 6,631 + ABZR87_RS00015 0.87 +1.1 6,632 - ABZR87_RS00015 0.87 +1.3 6,632 - ABZR87_RS00015 0.87 +1.7 6,632 - ABZR87_RS00015 0.87 +1.1 6,632 - ABZR87_RS00015 0.87 +0.0 6,632 - ABZR87_RS00015 0.87 +1.5 6,632 - ABZR87_RS00015 0.87 +0.8 6,632 - ABZR87_RS00015 0.87 +1.0 6,670 + ABZR87_RS00015 0.89 +1.8 6,740 - +1.2 6,740 - +1.1 6,811 + +1.4 6,812 - -3.0 6,918 + +2.4 6,918 + -0.0 6,918 + +4.0 6,918 + +0.4 6,919 - -2.3 6,919 - +0.1 6,928 + +0.8 6,929 - -1.2 6,929 - +0.5 6,965 + -0.1 6,965 + +0.2 6,966 - +0.6 7,031 + +0.5 7,036 + +1.3 7,036 + +1.0 7,037 - -0.9 7,097 + -0.4 7,113 + -0.0 7,113 + -1.1 7,113 + -1.1 7,272 + ABZR87_RS00020 0.89 +1.3 7,272 + ABZR87_RS00020 0.89 -0.1 7,272 + ABZR87_RS00020 0.89 -0.9 7,272 + ABZR87_RS00020 0.89 -0.9 7,272 + ABZR87_RS00020 0.89 +1.2 7,278 + -0.0 7,278 + +1.2 7,278 + -2.2 8,199 + +0.1 8,211 + +0.6 8,211 + +0.2 8,211 + +0.6 8,243 + -0.0 8,243 + +0.3 8,252 + -0.0 8,252 + +0.0 9,171 - -0.7 9,171 - +0.0
Or see this region's nucleotide sequence