Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0212

Experiment: BHIS with Sulfaquinoxaline 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0211 and BT0212 are separated by 50 nucleotidesBT0212 and BT0213 are separated by 12 nucleotidesBT0213 and BT0214 are separated by 21 nucleotides BT0211: BT0211 - hypothetical protein (NCBI ptt file), at 232,865 to 234,847 BT0211 BT0212: BT0212 - protease (NCBI ptt file), at 234,898 to 236,985 BT0212 BT0213: BT0213 - hypothetical protein (NCBI ptt file), at 236,998 to 237,813 BT0213 BT0214: BT0214 - hypothetical protein (NCBI ptt file), at 237,835 to 238,311 BT0214 Position (kb) 234 235 236 237Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 233.927 kb on - strand, within BT0211at 233.930 kb on - strand, within BT0211at 233.998 kb on - strand, within BT0211at 234.084 kb on + strand, within BT0211at 234.084 kb on + strand, within BT0211at 234.089 kb on - strand, within BT0211at 234.089 kb on - strand, within BT0211at 234.200 kb on + strand, within BT0211at 234.311 kb on + strand, within BT0211at 234.451 kb on + strand, within BT0211at 234.506 kb on + strand, within BT0211at 234.507 kb on - strand, within BT0211at 234.618 kb on + strand, within BT0211at 234.661 kb on - strandat 234.729 kb on + strandat 234.855 kb on - strandat 234.918 kb on + strandat 235.168 kb on + strand, within BT0212at 235.182 kb on + strand, within BT0212at 235.185 kb on - strand, within BT0212at 235.300 kb on - strand, within BT0212at 235.376 kb on - strand, within BT0212at 235.416 kb on + strand, within BT0212at 235.459 kb on + strand, within BT0212at 235.488 kb on + strand, within BT0212at 235.511 kb on + strand, within BT0212at 235.588 kb on - strand, within BT0212at 235.588 kb on - strand, within BT0212at 235.622 kb on - strand, within BT0212at 235.622 kb on - strand, within BT0212at 235.648 kb on - strand, within BT0212at 235.676 kb on - strand, within BT0212at 235.683 kb on + strand, within BT0212at 235.684 kb on - strand, within BT0212at 235.717 kb on - strand, within BT0212at 235.726 kb on + strand, within BT0212at 235.726 kb on + strand, within BT0212at 235.727 kb on - strand, within BT0212at 235.727 kb on - strand, within BT0212at 235.803 kb on + strand, within BT0212at 235.887 kb on + strand, within BT0212at 236.032 kb on + strand, within BT0212at 236.217 kb on + strand, within BT0212at 236.261 kb on - strand, within BT0212at 236.262 kb on + strand, within BT0212at 236.263 kb on - strand, within BT0212at 236.431 kb on - strand, within BT0212at 236.437 kb on - strand, within BT0212at 236.482 kb on + strand, within BT0212at 236.482 kb on + strand, within BT0212at 236.593 kb on + strand, within BT0212at 236.701 kb on - strand, within BT0212at 236.727 kb on - strand, within BT0212at 236.737 kb on - strand, within BT0212at 236.740 kb on + strand, within BT0212at 236.741 kb on - strand, within BT0212at 236.804 kb on + strandat 236.805 kb on - strandat 236.810 kb on - strandat 236.829 kb on + strandat 236.940 kb on + strandat 236.964 kb on + strandat 236.992 kb on + strandat 237.033 kb on - strandat 237.039 kb on - strandat 237.145 kb on - strand, within BT0213at 237.228 kb on + strand, within BT0213at 237.233 kb on + strand, within BT0213at 237.234 kb on - strand, within BT0213at 237.234 kb on - strand, within BT0213at 237.271 kb on - strand, within BT0213at 237.311 kb on + strand, within BT0213at 237.347 kb on - strand, within BT0213at 237.437 kb on + strand, within BT0213at 237.444 kb on + strand, within BT0213at 237.445 kb on - strand, within BT0213at 237.485 kb on - strand, within BT0213at 237.688 kb on - strand, within BT0213at 237.692 kb on + strand, within BT0213at 237.745 kb on - strandat 237.747 kb on + strandat 237.804 kb on + strandat 237.804 kb on + strandat 237.807 kb on + strandat 237.818 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction BHIS with Sulfaquinoxaline 0.1 mM
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233,927 - BT0211 0.54 -1.6
233,930 - BT0211 0.54 +0.7
233,998 - BT0211 0.57 +2.1
234,084 + BT0211 0.61 +0.1
234,084 + BT0211 0.61 -1.3
234,089 - BT0211 0.62 -2.3
234,089 - BT0211 0.62 +0.1
234,200 + BT0211 0.67 +1.1
234,311 + BT0211 0.73 -2.6
234,451 + BT0211 0.80 -1.1
234,506 + BT0211 0.83 -0.9
234,507 - BT0211 0.83 -0.9
234,618 + BT0211 0.88 -2.3
234,661 - -1.6
234,729 + -1.4
234,855 - -0.7
234,918 + -3.3
235,168 + BT0212 0.13 -0.9
235,182 + BT0212 0.14 -0.4
235,185 - BT0212 0.14 +0.1
235,300 - BT0212 0.19 +1.1
235,376 - BT0212 0.23 +2.1
235,416 + BT0212 0.25 -1.4
235,459 + BT0212 0.27 +0.1
235,488 + BT0212 0.28 -0.9
235,511 + BT0212 0.29 -1.9
235,588 - BT0212 0.33 -2.0
235,588 - BT0212 0.33 +1.7
235,622 - BT0212 0.35 -3.2
235,622 - BT0212 0.35 -2.2
235,648 - BT0212 0.36 +0.1
235,676 - BT0212 0.37 +0.9
235,683 + BT0212 0.38 +1.7
235,684 - BT0212 0.38 +1.7
235,717 - BT0212 0.39 -1.3
235,726 + BT0212 0.40 -0.9
235,726 + BT0212 0.40 -1.3
235,727 - BT0212 0.40 -1.6
235,727 - BT0212 0.40 -0.6
235,803 + BT0212 0.43 +1.1
235,887 + BT0212 0.47 -4.6
236,032 + BT0212 0.54 +1.1
236,217 + BT0212 0.63 -1.4
236,261 - BT0212 0.65 -0.4
236,262 + BT0212 0.65 +1.7
236,263 - BT0212 0.65 +2.1
236,431 - BT0212 0.73 +0.5
236,437 - BT0212 0.74 -0.9
236,482 + BT0212 0.76 +0.1
236,482 + BT0212 0.76 -0.6
236,593 + BT0212 0.81 +1.7
236,701 - BT0212 0.86 +0.5
236,727 - BT0212 0.88 +0.1
236,737 - BT0212 0.88 +1.1
236,740 + BT0212 0.88 -1.4
236,741 - BT0212 0.88 +1.1
236,804 + -0.9
236,805 - -2.7
236,810 - +0.1
236,829 + -2.2
236,940 + -0.9
236,964 + -1.4
236,992 + +0.1
237,033 - -1.3
237,039 - -2.3
237,145 - BT0213 0.18 -1.4
237,228 + BT0213 0.28 -3.2
237,233 + BT0213 0.29 -2.2
237,234 - BT0213 0.29 -1.9
237,234 - BT0213 0.29 +2.1
237,271 - BT0213 0.33 -0.2
237,311 + BT0213 0.38 -2.2
237,347 - BT0213 0.43 -1.4
237,437 + BT0213 0.54 -1.7
237,444 + BT0213 0.55 -2.3
237,445 - BT0213 0.55 +0.7
237,485 - BT0213 0.60 +0.1
237,688 - BT0213 0.85 -0.6
237,692 + BT0213 0.85 -3.3
237,745 - -2.3
237,747 + -1.7
237,804 + -2.2
237,804 + +0.1
237,807 + -0.9
237,818 - +0.1

Or see this region's nucleotide sequence