Experiment: KB with Ginkgolide A 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_5035 and Psyr_5036 are separated by 190 nucleotides Psyr_5036 and Psyr_5037 are separated by 204 nucleotides
Psyr_5035: Psyr_5035 - Peptidase M23B, at 5,974,705 to 5,975,607
_5035
Psyr_5036: Psyr_5036 - Response regulator receiver, at 5,975,798 to 5,976,682
_5036
Psyr_5037: Psyr_5037 - phosphate uptake regulator, PhoU, at 5,976,887 to 5,977,648
_5037
Position (kb) 5975
5976
5977 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5975.099 kb on + strand, within Psyr_5035 at 5975.099 kb on + strand, within Psyr_5035 at 5975.100 kb on - strand, within Psyr_5035 at 5975.100 kb on - strand, within Psyr_5035 at 5975.162 kb on + strand, within Psyr_5035 at 5975.163 kb on - strand, within Psyr_5035 at 5975.163 kb on - strand, within Psyr_5035 at 5975.163 kb on - strand, within Psyr_5035 at 5975.163 kb on - strand, within Psyr_5035 at 5975.216 kb on + strand, within Psyr_5035 at 5975.216 kb on + strand, within Psyr_5035 at 5975.216 kb on + strand, within Psyr_5035 at 5975.217 kb on - strand, within Psyr_5035 at 5975.217 kb on - strand, within Psyr_5035 at 5975.217 kb on - strand, within Psyr_5035 at 5975.217 kb on - strand, within Psyr_5035 at 5975.217 kb on - strand, within Psyr_5035 at 5975.217 kb on - strand, within Psyr_5035 at 5975.217 kb on - strand, within Psyr_5035 at 5975.217 kb on - strand, within Psyr_5035 at 5975.217 kb on - strand, within Psyr_5035 at 5975.369 kb on + strand, within Psyr_5035 at 5975.370 kb on - strand, within Psyr_5035 at 5975.370 kb on - strand, within Psyr_5035 at 5975.370 kb on - strand, within Psyr_5035 at 5975.370 kb on - strand, within Psyr_5035 at 5975.387 kb on + strand, within Psyr_5035 at 5975.387 kb on + strand, within Psyr_5035 at 5975.388 kb on - strand, within Psyr_5035 at 5975.388 kb on - strand, within Psyr_5035 at 5975.388 kb on - strand, within Psyr_5035 at 5975.388 kb on - strand, within Psyr_5035 at 5975.398 kb on + strand, within Psyr_5035 at 5975.398 kb on + strand, within Psyr_5035 at 5975.399 kb on - strand, within Psyr_5035 at 5975.399 kb on - strand, within Psyr_5035 at 5975.535 kb on + strand at 5975.536 kb on - strand at 5975.536 kb on - strand at 5975.536 kb on - strand at 5975.537 kb on + strand at 5975.646 kb on - strand at 5975.646 kb on - strand at 5975.646 kb on - strand at 5975.742 kb on + strand at 5975.742 kb on + strand at 5975.743 kb on - strand at 5975.856 kb on + strand at 5975.856 kb on + strand at 5975.857 kb on - strand at 5975.857 kb on - strand at 5976.017 kb on + strand, within Psyr_5036 at 5976.453 kb on + strand, within Psyr_5036 at 5976.453 kb on + strand, within Psyr_5036 at 5976.589 kb on + strand, within Psyr_5036 at 5976.590 kb on - strand, within Psyr_5036 at 5976.607 kb on - strand at 5976.665 kb on + strand at 5976.665 kb on + strand at 5976.665 kb on + strand at 5976.665 kb on + strand at 5976.665 kb on + strand at 5976.666 kb on - strand at 5976.666 kb on - strand at 5976.666 kb on - strand at 5976.666 kb on - strand at 5976.666 kb on - strand at 5976.666 kb on - strand at 5976.666 kb on - strand at 5976.666 kb on - strand at 5976.676 kb on + strand at 5976.676 kb on + strand at 5976.677 kb on - strand at 5976.755 kb on + strand at 5976.756 kb on - strand at 5976.756 kb on - strand at 5976.806 kb on + strand at 5976.806 kb on + strand at 5976.806 kb on + strand at 5976.806 kb on + strand at 5976.807 kb on - strand at 5976.807 kb on - strand at 5976.807 kb on - strand at 5976.828 kb on - strand at 5976.828 kb on - strand at 5976.828 kb on - strand at 5976.828 kb on - strand at 5976.888 kb on + strand at 5976.888 kb on + strand at 5976.888 kb on + strand at 5976.888 kb on + strand at 5976.888 kb on + strand at 5976.888 kb on + strand at 5976.888 kb on + strand at 5976.888 kb on + strand at 5976.888 kb on + strand at 5976.889 kb on - strand at 5976.889 kb on - strand at 5976.889 kb on - strand at 5976.889 kb on - strand at 5976.889 kb on - strand at 5976.889 kb on - strand at 5976.889 kb on - strand at 5976.889 kb on - strand at 5976.889 kb on - strand at 5976.889 kb on - strand at 5976.889 kb on - strand at 5976.889 kb on - strand at 5976.892 kb on + strand at 5976.892 kb on + strand at 5976.892 kb on + strand at 5976.892 kb on + strand at 5976.893 kb on - strand at 5976.893 kb on - strand at 5976.893 kb on - strand at 5976.893 kb on - strand at 5976.893 kb on - strand at 5976.934 kb on + strand at 5976.934 kb on + strand at 5976.934 kb on + strand at 5976.934 kb on + strand at 5976.934 kb on + strand at 5976.934 kb on + strand at 5976.934 kb on + strand at 5976.934 kb on + strand at 5976.934 kb on + strand at 5976.935 kb on - strand at 5976.935 kb on - strand at 5976.935 kb on - strand at 5976.935 kb on - strand at 5976.999 kb on + strand, within Psyr_5037
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM remove 5,975,099 + Psyr_5035 0.44 -0.2 5,975,099 + Psyr_5035 0.44 -3.2 5,975,100 - Psyr_5035 0.44 -0.1 5,975,100 - Psyr_5035 0.44 +1.3 5,975,162 + Psyr_5035 0.51 -0.9 5,975,163 - Psyr_5035 0.51 +0.4 5,975,163 - Psyr_5035 0.51 +0.4 5,975,163 - Psyr_5035 0.51 +0.1 5,975,163 - Psyr_5035 0.51 -0.4 5,975,216 + Psyr_5035 0.57 -1.2 5,975,216 + Psyr_5035 0.57 -0.1 5,975,216 + Psyr_5035 0.57 +1.4 5,975,217 - Psyr_5035 0.57 +0.3 5,975,217 - Psyr_5035 0.57 +1.4 5,975,217 - Psyr_5035 0.57 -0.8 5,975,217 - Psyr_5035 0.57 +1.7 5,975,217 - Psyr_5035 0.57 +4.0 5,975,217 - Psyr_5035 0.57 -1.2 5,975,217 - Psyr_5035 0.57 +0.5 5,975,217 - Psyr_5035 0.57 +0.6 5,975,217 - Psyr_5035 0.57 +1.0 5,975,369 + Psyr_5035 0.74 +0.4 5,975,370 - Psyr_5035 0.74 +1.1 5,975,370 - Psyr_5035 0.74 +0.2 5,975,370 - Psyr_5035 0.74 +0.8 5,975,370 - Psyr_5035 0.74 -0.0 5,975,387 + Psyr_5035 0.76 -1.6 5,975,387 + Psyr_5035 0.76 +0.7 5,975,388 - Psyr_5035 0.76 +0.6 5,975,388 - Psyr_5035 0.76 -1.6 5,975,388 - Psyr_5035 0.76 -1.7 5,975,388 - Psyr_5035 0.76 +0.2 5,975,398 + Psyr_5035 0.77 -0.3 5,975,398 + Psyr_5035 0.77 -0.2 5,975,399 - Psyr_5035 0.77 +0.7 5,975,399 - Psyr_5035 0.77 +0.1 5,975,535 + -1.1 5,975,536 - -0.1 5,975,536 - +0.6 5,975,536 - +0.3 5,975,537 + -1.6 5,975,646 - -0.2 5,975,646 - -1.2 5,975,646 - -0.2 5,975,742 + -0.2 5,975,742 + +0.3 5,975,743 - +0.1 5,975,856 + +0.8 5,975,856 + +0.5 5,975,857 - +0.3 5,975,857 - -0.2 5,976,017 + Psyr_5036 0.25 -1.2 5,976,453 + Psyr_5036 0.74 -0.5 5,976,453 + Psyr_5036 0.74 +0.0 5,976,589 + Psyr_5036 0.89 +2.6 5,976,590 - Psyr_5036 0.89 +0.8 5,976,607 - -1.4 5,976,665 + -2.0 5,976,665 + -1.8 5,976,665 + -0.0 5,976,665 + +0.3 5,976,665 + +1.9 5,976,666 - -1.0 5,976,666 - +0.1 5,976,666 - -0.2 5,976,666 - +0.2 5,976,666 - -0.3 5,976,666 - -0.6 5,976,666 - +0.0 5,976,666 - -0.6 5,976,676 + +1.2 5,976,676 + -1.2 5,976,677 - +0.7 5,976,755 + -1.8 5,976,756 - -1.0 5,976,756 - -0.3 5,976,806 + +1.1 5,976,806 + -0.5 5,976,806 + -1.7 5,976,806 + -0.7 5,976,807 - -1.9 5,976,807 - -1.1 5,976,807 - +0.8 5,976,828 - +1.4 5,976,828 - -0.1 5,976,828 - -0.2 5,976,828 - -0.2 5,976,888 + -0.9 5,976,888 + +1.4 5,976,888 + -1.8 5,976,888 + +0.7 5,976,888 + +0.6 5,976,888 + +2.4 5,976,888 + +0.8 5,976,888 + -0.2 5,976,888 + +0.2 5,976,889 - +1.3 5,976,889 - +0.6 5,976,889 - -0.0 5,976,889 - +0.2 5,976,889 - -0.2 5,976,889 - +1.0 5,976,889 - +2.4 5,976,889 - +0.6 5,976,889 - +0.6 5,976,889 - -1.8 5,976,889 - -0.7 5,976,889 - +0.3 5,976,892 + -0.5 5,976,892 + -0.5 5,976,892 + -3.0 5,976,892 + +0.1 5,976,893 - +0.0 5,976,893 - -0.5 5,976,893 - +0.5 5,976,893 - +0.8 5,976,893 - -1.9 5,976,934 + +0.3 5,976,934 + +0.0 5,976,934 + +0.2 5,976,934 + +1.8 5,976,934 + -0.7 5,976,934 + +0.9 5,976,934 + -1.9 5,976,934 + -0.5 5,976,934 + -0.8 5,976,935 - +2.4 5,976,935 - -0.2 5,976,935 - -0.7 5,976,935 - +1.7 5,976,999 + Psyr_5037 0.15 -1.6
Or see this region's nucleotide sequence